Diversity and taxonomy ofChaetomiumand chaetomium-like fungi from indoor environments

Studies in Mycology - Tập 84 Số 1 - Trang 145-224 - 2016
X W Wang1, Jos Houbraken2, J.Z. Groenewald2, Martin Meijer2, Birgitte Andersen3, Kristian Fog Nielsen3, P.W. Crous4, Robert A. Samson2
1State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 3, 1st Beichen West Road, Chaoyang District, Beijing 100101, China; CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.
2CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
3DTU Bioengineering, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark.
4CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa; Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.

Tóm tắt

During a study of indoor fungi, 145 isolates belonging toChaetomiaceaewere cultured from air, swab and dust samples from 19 countries. Based on the phylogenetic analyses of DNA-directed RNA polymerase II second largest subunit (rpb2), β-tubulin (tub2), ITS and 28S large subunit (LSU) nrDNA sequences, together with morphological comparisons with related genera and species, 30 indoor taxa are recognised, of which 22 represent known species, seven are described as new, and one remains to be identified to species level. In our collection, 69 % of the indoor isolates with six species cluster with members of theChaetomium globosumspecies complex, representingChaetomium sensu stricto. The other indoor species fall into nine lineages that are separated from each other with several known chaetomiaceous genera occurring among them. No generic names are available for five of those lineages, and the following new genera are introduced here:Amesiawith three indoor species,Arcopiluswith one indoor species,Collariellawith four indoor species,Dichotomopiluswith seven indoor species andOvatosporawith two indoor species. The generic concept ofBotryotrichumis expanded to includeEmilmuelleriaand the chaetomium-like speciesB. muromum(=Ch. murorum) in which two indoor species are included. The generic concept ofSubramaniulais expanded to include several chaetomium-like taxa as well as one indoor species.Humicolais recognised as a distinct genus including two indoor taxa. According to this study,Ch. globosumis the most abundantChaetomiaceaeindoor species (74/145), followed byCh. cochliodes(17/145),Ch. elatum(6/145) andB. piluliferum(5/145). The morphological diversity of indoorChaetomiaceaeas well as the morphological characteristics of the new genera are described and illustrated. This taxonomic study redefines the generic concept ofChaetomiumand provides new insight into the phylogenetic relationships among different genera withinChaetomiaceae.

Từ khóa


Tài liệu tham khảo

Abbott, 1995, Fatal cerebral mycoses caused by the ascomycete Chaetomium strumarium, Journal of Clinical Microbiology, 33, 2692, 10.1128/JCM.33.10.2692-2698.1995

Ahmed, 2016, Chaetomium-like fungi causing opportunistic infections in humans: a possible role for extremotolerance, Fungal Diversity, 76, 11, 10.1007/s13225-015-0338-5

Ames, 1963

Amend, 2010, Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics, Proceedings of the National Academy of Sciences of the United States of America, 107, 13748, 10.1073/pnas.1000454107

Andersen, 2016, Pre-contamination of new gypsum wallboard with potentially harmful fungal species, Indoor Air

Andersen, 2011, Associations between fungal species and water-damaged building materials, Applied and Environmental Microbiology, 77, 4180, 10.1128/AEM.02513-10

Apetrei, 2009, Possible cause of allergy for the librarians: books manipulation and ventilation as sources of fungus spores spreading, Aerobiologia, 25, 159, 10.1007/s10453-009-9121-y

Asgari, 2011, The genus Chaetomium in Iran, a phylogenetic study including six new species, Mycologia, 103, 863, 10.3852/10-349

Aspiroz, 2007, First Spanish case of onychomycosis caused by Chaetomium globosum, Medical Mycology, 45, 279, 10.1080/13693780601164280

Awad, 2014, Bioassays guided isolation of compounds from Chaetomium globosum, Journal de Mycologie Médicale, 24, e35, 10.1016/j.mycmed.2013.10.005

Ayanbimpe, 2010, Indoor air mycoflora of residential dwellings in Jos metropolis, African Health Sciences, 10, 172

Barron, 2003, Invasive mycotic infections caused by Chaetomium perlucidum, a new agent of cerebral phaeohyphomycosis, Journal of Clinical Microbiology, 41, 5302, 10.1128/JCM.41.11.5302-5307.2003

Bertoldi, 1976, New species of Humicola: an approach to genetic and biochemical classification, Canadian Journal of Botany, 54, 2755, 10.1139/b76-296

Brasel, 2005, Detection of airborne Stachybotrys chartarum macrocyclic trichothecene mycotoxins in the indoor environment, Applied and Environmental Microbiology, 71, 7376, 10.1128/AEM.71.11.7376-7388.2005

Cain, 1961, Studies of soil fungi III. New species of Coniochaeta, Chaetomidium, and Thielavia, Canadian Journal of Botany, 39, 1231, 10.1139/b61-107

Carter, 1982

Carter, 1983, Three new species in the genus Chaetomium, Canadian Journal of Botany, 61, 2603, 10.1139/b83-286

Chivers, 1915, A monograph of the genera Chaetomium and Ascotricha, Memoirs of the Torrey Botanical Club, 14, 155

Corda, 1840

Cunningham, 1997, Can three incongruency tests predict when data should be combined?, Molecular Biology and Evolution, 14, 733, 10.1093/oxfordjournals.molbev.a025813

Daniels, 1961, Chaetomium piluliferum sp. nov., the perfect state of Botryotrichum piluliferum, Transactions of the British Mycological Society, 44, 79, 10.1016/S0007-1536(61)80009-0

de Hoog, 2013, Phylogenetic findings suggest possible new habitat and routes of infection of human eumyctoma, PLoS Neglected Tropical Diseases, 7, e2229, 10.1371/journal.pntd.0002229

Ding, 2006, Chaetoglobosin U, a cytochalasan alkaloid from endophytic Chaetomium globosum IFB-E019, Journal of Natural Products, 69, 302, 10.1021/np050515+

Došen, 2016, Potentially harmful secondary metabolites produced by indoor Chaetomium species on artificially and naturally contaminated building materials, Indoor Air

Dreyfuss, 1976, Taxonomische Untersuchungen innerhalb der Gattung Chaetomium, Sydowia, 28, 50

Flannigan, 2011, Microbial growth in indoor environments, 57

Frisvad, 2008, The use of secondary metabolite profiling in chemotaxonomy of filamentous fungi, Mycological Research, 112, 231, 10.1016/j.mycres.2007.08.018

Ge, 2008, Chaetoglobins A and B, Two unusual alkaloids from endophytic Chaetomium globosum culture, Chemical Communications, 45, 5978

Gonianakis, 2005, Airborne Ascomycotina on the island of Crete: seasonal patterns based on an 8-year volumetric survey, Aerobiologia, 21, 69, 10.1007/s10453-004-5881-6

Greif, 2009, A re-evaluation of genus Chaetomidium based on molecular and morphological characters, Mycologia, 101, 554, 10.3852/08-200

Groenewald, 2013, Species concepts in Cercospora: spotting the weeds among the roses, Studies in Mycology, 75, 115, 10.3114/sim0012

Gueidan, 2007, Using multigene phylogeny analysis to assess generic delineation and character evolution in Verrucariaceae (Verrucariales, Ascomycota), Mycological Research, 111, 1145, 10.1016/j.mycres.2007.08.010

Guppy, 1998, Cerebral fungal infections in the immunocompromised host: A literature review and a new pathogen – Chaetomium atrobrunneum, Neurosurgery (Baltimore), 43, 1463

Hall, 1999, BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symposium Series, 41, 95

Hambleton, 2005, Leohumicola, a new genus of heat-resistant hyphomycetes, Studies in Mycology, 53, 29, 10.3114/sim.53.1.29

Hawksworth, 1975, Farrowia, a new genus in the Chaetomiaceae, Persoonia, 8, 167

Hubka, 2011, Phaeohyphomycosis and onychomycosis due to Chaetomium spp., including the first report of Chaetomium brasiliense infection, Medical Mycology, 49, 724

Hoppin, 1983, Opportunistic mycotic infection caused by Chaetomium in a patient with acute leukemia, Cancer, 52, 555, 10.1002/1097-0142(19830801)52:3<555::AID-CNCR2820520328>3.0.CO;2-V

Hwang, 2012, Onychomycosis due to nondermatophytic molds, Annals of Dermatology, 24, 175, 10.5021/ad.2012.24.2.175

Katoh, 2013, MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Molecular Biology and Evolution, 30, 772, 10.1093/molbev/mst010

Kharwar, 2011, Anticancer compounds derived from fungal endophytes: their importance and future challenges, Natural Product Reports, 28, 1208, 10.1039/c1np00008j

Kildgård, 2014, Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS Library, Marine Drugs, 12, 3681, 10.3390/md12063681

Kim, 2013, Onychomycosis caused by Chaetomium globosum, Annals of Dermatology, 25, 232, 10.5021/ad.2013.25.2.232

Kirk, 2008, 1

Koch, 1965, Chaetomium funicolum Cooke als moglicher Erreger einer tiefen Mykose, Mkosen, 9, 23, 10.1111/j.1439-0507.1966.tb02658.x

Kunze, 1817, 1

Lagacé, 2012, A case report of a mixed Chaetomium globosum/Trichophyton mentagrophytes onychomycosis, Medical Mycology Case Reports, 1, 76, 10.1016/j.mmcr.2012.09.001

Latha, 2010, Onychomycosis due to ascomycete Chaetomium globosum: a case report, Indian Journal of Pathology and Microbiology, 53, 566, 10.4103/0377-4929.68279

Li, 2012, Growth temperature of Chaetomium species and its taxonomic value, Mycosystema, 31, 213

Lodha, 1964, Studies on coprophilous fungi I. Chaetomium, The Journal of the Indian Botanical Society, 43, 121

Lombard, 2010, Phylogeny and systematics of the genus Calonectria, Studies in Mycology, 66, 31, 10.3114/sim.2010.66.03

Lu, 2013, Chaetochromones A and B, two new polyketides from the fungus Chaetomium indicum (CBS.860.68), Molecules, 18, 10944, 10.3390/molecules180910944

Mason-Gamer, 1996, Testing for phylogenetic conflict among molecular datasets in the tribe Tiriceae (Graminae), Systematic Biology, 45, 524, 10.1093/sysbio/45.4.524

Mason, 2010, Detection of gaseous effluents and by-products of fungal growth that affect environments (RP-1243), HVAC & R Research, 16, 109, 10.1080/10789669.2010.10390896

Mazzucchetti, 1965, Microfungi della cellulosa eddla carta attivita’s e inquadramento sistematico – Il genere “Chaetomium”, Pubblicazioni Dell’ ente nazionale Per La Cellulosa e Per La Carta, Roma

McMullin, 2013, Chaetoglobosins and azaphilones produced by Canadian strains of Chaetomium globosum isolated from the indoor environment, Mycotoxin Research, 29, 47, 10.1007/s12550-012-0144-9

Millner, 1977, Radial growth responses to temperature by 58 Chaetomium species, and some taxonomic relationships, Mycologia, 69, 492, 10.2307/3758552

Millner, 1977, Ascospores, germ pores, ultrastructure, and thermophilism of Chaetomium, Mycologia, 69, 720, 10.2307/3758862

Miller, 2005, Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi), Molecular Phylogenetics and Evolution, 35, 60, 10.1016/j.ympev.2005.01.007

Miller, 2014, Fungal secondary metabolites as harmful indoor air contaminants: 10 years on, Applied Microbiology and Biotechnology, 98, 9953, 10.1007/s00253-014-6178-5

Momesso, 2008, Chaetoglobosins produced by Chaetomium globosum, endophytic fungus found in association with Viguiera robusta Gardn (Asteraceae), Química Nova, 31, 1680, 10.1590/S0100-40422008000700015

Naidu, 1991, Onychomycosis caused by Chaetomium globosum Kunze, Mycopathologia, 113, 31, 10.1007/BF00436384

Nylander, 2004

O'Donnell, 1993, Fusarium and its near relatives, 225

O'Donnell, 1997, Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous, Molecular Phylogenetics and Evolution, 7, 103, 10.1006/mpev.1996.0376

Phonkerd, 2008, Bis-spiro-azaphilones and azaphilones from the fungi Chaetomium cochliodes VTh01 and C. cochliodes CTh05, Tetrahedron, 64, 9636, 10.1016/j.tet.2008.07.040

Polizzi, 2009, JEM spotlight: fungi, mycotoxins and microbial volatile organic compounds in mouldy interiors from water-damaged buildings, Journal of Environmental Monitoring, 11, 1849, 10.1039/b906856b

Rambaut

Rank, 2011, Distribution of sterigmatocystin in filamentous fungi, Fungal Biology, 115, 406, 10.1016/j.funbio.2011.02.013

Saccardo, 1882, Sylloge Fungorum, 1, 1

Saccardo, 1886, Sylloge Fungorum, 4, 1

Samson, 1994

Samson, 2010, Food and indoor fungi

Sekita, 1981, Mycotoxin production by Chaetomium spp. and related fungi, Canadian Journal of Microbiology, 27, 766, 10.1139/m81-119

Seth, 1970, A monograph of the genus Chaetomium, Beihefte zur Nova Hedwigia, 37, 1

Skolko, 1948, Notes on seed-borne fungi V. Chaetomium species with dichotomously branched hairs, Canadian Journal of Research, 26, 269, 10.1139/cjr48c-025

Skolko, 1953, Notes on seed-borne fungi VII. Chaetomium, Canadian Journal of Botany, 31, 779, 10.1139/b53-060

Sörgel, 1960, Zum problem der trennung von arten bei pilzen, dargestellt am beispiel der ascomycetengattung Chaetomium, Archives of Microbiology, 36, 51

Stiller, 1992, Onychomycosis of the toenails caused by Chaetomium globosum, Journal of the American Academy of Dermatology, 26, 775, 10.1016/S0190-9622(08)80558-0

Straus, 2011, The possible role of fungal contamination in sick building syndrome, Frontiers in Bioscience, 3, 562, 10.2741/e270

Tamura, 2013, MEGA6: Molecular Evolutionary Genetics Analysis version 6.0, Molecular Biology and Evolution, 30, 2725, 10.1093/molbev/mst197

Tullio, 2010, Non-dermatophytemoulds as skin and nail foot mycosis agents: Phoma herbarum, Chaetomium globosum and Microascus cinereus, Fungal Biology, 114, 345, 10.1016/j.funbio.2010.02.003

Udagawa, 1979, The production of chaetoglobosins, sterigmatocystin, O-methylsterigmatocystin, and chaetocin by Chaetomium spp. and related fungi, Canadian Journal of Microbiology, 25, 170, 10.1139/m79-027

Vesper, 2007, Quantitative PCR analysis of molds in the dust from homes of asthmatic children in North Carolina, Journal of environmental Monitoring, 9, 826, 10.1039/b704359g

Visagie, 2014, Aspergillus, Penicillium and Talaromyces isolated from house dust samples collected around the world, Studies in Mycology, 78, 63, 10.1016/j.simyco.2014.07.002

von Arx, 1985, Emilmuelleria, a new genus of Ascomycota, Sydowia, 38, 6

von Arx, 1985, On Achaetomium and a new genus Subramaniula, Proceedings of the Indian Academy of Science (Plant Science), 94, 341, 10.1007/BF03053148

von Arx, 1984, A reevaluation of Chaetomium and Chaetomiaceae, Persoonia, 12, 169

von Arx, 1988, Sordariaceous ascomycetes without ascospore ejaculation, Beihefte zur Nova Hedwigia, 94, 1

von Arx, 1986, The Ascomycete genus Chaetomium, Beihefte zur Nova Hedwigia, 84, 1

Wang, 2015, Stereochemical determination of tetrahydropyran-substituted xanthones from fungus Chaetomium murorum, Chinese Chemical Letters, 26, 1507, 10.1016/j.cclet.2015.10.025

Wang, 2016, Phylogenetic reassessment of the Chaetomium globosum species complex, Persoonia, 36, 83, 10.3767/003158516X689657

Wang, 2014, Phylogenetic assessment of Chaetomium indicum and allied species, with the introduction of three new species and epitypification of C. funicola and C. indicum, Mycological Progress, 13, 719, 10.1007/s11557-013-0955-x

White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315

WHO, 2009

Yamada, 2012, Three new azaphilones produced by a marine fish-derived Chaetomium globosum, The Journal of Antibiotics, 65, 413, 10.1038/ja.2012.40

Yan, 2014, Pictet-Spengler reaction-based biosynthetic machinery in fungi, Proceedings of the National Academy of Sciences of the United States of America, 111, 18138, 10.1073/pnas.1417304111

Zhang, 2012, Chemical and bioactive diversities of the genus Chaetomium secondary metabolites, Mini Reviews in Medical Chemistry, 12, 127, 10.2174/138955712798995066

Zopf, 1881, Zur Entwicklungsgeschichte der Ascomyceten: Chaetomium, Nova Acta der Kaiserlich Leopoldinisch-Carolinisch Deutschen Akademie der Naturforscher, 42, 199