Divergent gene expression in the gills of juvenile turbot (Psetta maxima) exposed to chronic severe hypercapnia indicates dose-dependent increase in intracellular oxidative stress and hypoxia
Tài liệu tham khảo
Au-Yeung, 2013, Transcriptional regulation by STAT1 and STAT2 in the interferon JAK-STAT pathway, Jak-Stat, 2, 10.4161/jkst.23931
Ben-Asher, 2013, Effects of sub-lethal CO2(aq) concentrations on the performance of intensively reared gilthead seabream (Sparus aurata) in brackish water: flow-through experiments and full-scale RAS results, Aquac. Eng., 56, 18, 10.1016/j.aquaeng.2013.04.002
Bonnay, 2014, Akirin specifies NF-κB selectivity of Drosophila innate immune response via chromatin remodeling, EMBO J., 33, 2349, 10.15252/embj.201488456
Bresolin de Souza, 2014, Effects of increased CO2 on fish gill and plasma proteome, PLoS One, 9, 10.1371/journal.pone.0102901
Bukau, 2006, Molecular chaperones and protein quality control, Cell, 125, 443, 10.1016/j.cell.2006.04.014
Claiborne, 2002, Acid-base regulation in fishes: cellular and molecular mechanisms, J. Exp. Zool., 293, 302, 10.1002/jez.10125
Colt, 2006, Water quality requirements for reuse systems, Aquac. Eng., 34, 143, 10.1016/j.aquaeng.2005.08.011
Deigweiher, 2010, Hypercapnia induced shifts in gill energy budgets of Antarctic notothenioids, J. Comp. Physiol. B, 180, 347, 10.1007/s00360-009-0413-x
Deigweiher, 2008, Acclimation of ion regulatory capacities in gills of marine fish under environmental hypercapnia, Am. J. Physiol. Regul. Integr. Comp. Physiol., 295, R1660, 10.1152/ajpregu.90403.2008
Dennis, 2015, Molecular responses of fishes to elevated carbon dioxide, Comp. Biochem. Physiol. Part A Mol. Integr. Physiol., 187, 224, 10.1016/j.cbpa.2014.05.013
Evans, 2005, The multifunctional fish gill : dominant site of gas exchange, osmoregulation, acid-base regulation, and excretion of nitrogenous waste, Physiol. Rev., 85, 97, 10.1152/physrev.00050.2003
Fabry, 2008, Impacts of ocean acidification on marine fauna and ecosystem processes, ICES J. Mar. Sci., 65, 414, 10.1093/icesjms/fsn048
Fivelstad, 2012, Long-term carbon dioxide experiments with salmonids, Aquac. Eng., 53, 40, 10.1016/j.aquaeng.2012.11.006
Fivelstad, 1998, Sublethal effects and safe levels of carbon dioxide in seawater for Atlantic salmon postsmolts (Salmo salar L.): ion regulation and growth, Aquaculture, 160, 305, 10.1016/S0044-8486(97)00166-X
Foss, 2003, Graded environmental hypercapnia in juvenile spotted wolffish (Anarhichas minor Olafsen): effects on growth, food conversion efficiency and nephrocalcinosis, Aquaculture, 220, 607, 10.1016/S0044-8486(02)00613-0
Frick, 2008, Lipid, ketone body and oxidative metabolism in the African lungfish, Protopterus dolloi following 60 days of fasting and aestivation, Comp. Biochem. Physiol. Part A Mol. Integr. Physiol., 151, 93, 10.1016/j.cbpa.2008.06.004
Goto, 2008, Akirins are highly conserved nuclear proteins required for NF-kappaB-dependent gene expression in drosophila and mice, Nat. Immunol., 9, 97, 10.1038/ni1543
Haddad, 2002, Redox regulation of pro-inflammatory cytokines and IkappaB-alpha/NF-kappaB nuclear translocation and activation, Biochem. Biophys. Res. Commun., 296, 847, 10.1016/S0006-291X(02)00947-6
Harper, 2009, Morphologic effects of the stress response in fish, ILAR J., 50, 387, 10.1093/ilar.50.4.387
Hellemans, 2007, qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data, Genome Biol., 8, R19, 10.1186/gb-2007-8-2-r19
Hermann, 2016, Effects of dietary purified rapeseed protein concentrate on hepatic gene expression in juvenile turbot (Psetta maxima), Aquac. Nutr., 22, 170, 10.1111/anu.12251
Heuer, 2014, Physiological impacts of elevated carbon dioxide and ocean acidification on fish, Am. J. Physiol. Regul. Integr. Comp. Physiol., 307, R1061, 10.1152/ajpregu.00064.2014
Huang, 2004, GRIM-19, a cell death regulatory protein, is essential for assembly and function of mitochondrial complex I, Mol. Cell. Biol., 24, 8447, 10.1128/MCB.24.19.8447-8456.2004
Ishimatsu, 2004, Effects of CO2 on marine fish: larvae and adults, J. Oceanogr., 60, 731, 10.1007/s10872-004-5765-y
Kassahn, 2009, Animal performance and stress: responses and tolerance limits at different levels of biological organisation, Biol. Rev., 84, 277, 10.1111/j.1469-185X.2008.00073.x
Koressaar, 2007, Enhancements and modifications of primer design program Primer3, Bioinformatics, 23, 1289, 10.1093/bioinformatics/btm091
Kotamraju, 2006, Upregulation of immunoproteasomes by nitric oxide: potential antioxidative mechanism in endothelial cells, Free Radic. Biol. Med., 40, 1034, 10.1016/j.freeradbiomed.2005.10.052
Kristensen, 2009, Important influent-water quality parameters at freshwater production sites in two salmon producing countries, Aquac. Eng., 41, 53, 10.1016/j.aquaeng.2009.06.009
Lamberti, 2004, The translation elongation factor 1A in tumorigenesis, signal transduction and apoptosis: review article, Amino Acids, 26, 443, 10.1007/s00726-004-0088-2
Mallatt, 1985, Fish gill structural changes induced by toxicants and other irritants: a statistical review, Can. J. Fish. Aquat. Sci., 42, 630, 10.1139/f85-083
Moran, 2011, The effect of carbon dioxide on growth of juvenile Atlantic cod Gadus morhua L, Aquat. Toxicol., 102, 24, 10.1016/j.aquatox.2010.12.014
Murphy, 2009, How mitochondria produce reactive oxygen species, Biochem. J., 417, 1, 10.1042/BJ20081386
Nallar, 2008, GRIM-19: a double-edged sword that regulates anti-tumor and innate immune responses, Transl. Oncogenomics, 2008, 67
Naskar, 2009, Surface ultrastructural changes in the gills of an indian stenohaline catfish, Clarias batrachus (Linn.) under acute acid and aluminium stress, Ecoscan, 3, 221
Nogueira, 2001, Mitochondrial respiratory chain adjustment to cellular energy demand, J. Biol. Chem., 276, 46104, 10.1074/jbc.M107425200
Perkins, 2015, Peroxiredoxins: guardians against oxidative stress and modulators of peroxide signaling, Trends Biochem. Sci., 40, 435, 10.1016/j.tibs.2015.05.001
Petochi, 2011, Coping strategy and stress response of European sea bass Dicentrarchus labrax to acute and chronic environmental hypercapnia under hyperoxic conditions, Aquaculture, 315, 312, 10.1016/j.aquaculture.2011.02.028
Pörtner, 2004, Biological Impact of elevated ocean CO2 concentrations: lessons from animal physiology and earth history, J. Oceanogr., 60, 705, 10.1007/s10872-004-5763-0
Poupard, 2000, Apolipoprotein E gene expression correlates with endogenous lipid nutrition and yolk syncytial layer lipoprotein synthesis during fish development, Cell Tissue Res., 300, 251, 10.1007/s004419900158
Prunet, 2008, Functional genomics of stress responses in fish, Rev. Fish. Sci., 16, 157, 10.1080/10641260802341838
Prunet, 2012, Fish welfare and genomics, Fish Physiol. Biochem., 38, 43, 10.1007/s10695-011-9522-z
R Core Team, 2016
Reiser, 2011, Risks of seawater ozonation in recirculation aquaculture - Effects of oxidative stress on animal welfare of juvenile turbot (Psetta maxima, L.), Aquat. Toxicol., 105, 508, 10.1016/j.aquatox.2011.08.004
Sasikumar, 2012, The many roles of the eukaryotic elongation factor 1 complex, Wiley Interdiscip. Rev. RNA, 3, 543, 10.1002/wrna.1118
Schoonbroodt, 2000, Oxidative stress interference with the nuclear factor-kappa B activation pathways, Biochem. Pharmacol., 60, 1075, 10.1016/S0006-2952(00)00371-3
Seibel, 2003, Biological impacts of deep-sea carbon dioxide injection inferred from indices of physiological performance, J. Exp. Biol., 206, 641, 10.1242/jeb.00141
Stangl, 2010, The ubiquitin-proteasome pathway and endothelial (dys)function, Cardiovasc. Res., 85, 281, 10.1093/cvr/cvp315
Stiller, 2013, A novel respirometer for online detection of metabolites in aquaculture research: evaluation and first applications, Aquac. Eng., 55, 23, 10.1016/j.aquaeng.2013.01.004
Stiller, 2015, The effect of carbon dioxide on growth and metabolism in juvenile turbot Scophthalmus maximus L, Aquaculture, 444, 143, 10.1016/j.aquaculture.2015.04.001
Stiller, 2017, The effect of diet, temperature and intermittent low oxygen on the metabolism of rainbow trout, Br. J. Nutr., 117, 784, 10.1017/S0007114517000472
Storey, 2004, Metabolic rate depression in animals: transcriptional and translational controls, Biol. Rev. Camb. Philos. Soc., 79, 207, 10.1017/S1464793103006195
Sun, 2008, Cyclic AMP-responsive element binding protein- and nuclear factor-kappaB-regulated CXC chemokine gene expression in lung carcinogenesis, Cancer Prev. Res., 1, 316, 10.1158/1940-6207.CAPR-07-0002
Temple, 2005, Complex cellular responses to reactive oxygen species, Trends Cell Biol., 15, 319, 10.1016/j.tcb.2005.04.003
Thorpe, 2004, Cells have distinct mechanisms to maintain protection against different reactive oxygen species: oxidative-stress-response genes, Proc. Natl. Acad. Sci. U. S. A., 101, 6564, 10.1073/pnas.0305888101
Tocher, 2003, Metabolism and functions of lipids and fatty acids in teleost fish, Rev. Fish. Sci., 11, 107, 10.1080/713610925
Untergasser, 2012, Primer3 - new capabilities and interfaces, Nucleic Acids Res., 40, e115, 10.1093/nar/gks596
Vagner, 2011, Characterization and modulation of gene expression and enzymatic activity of delta-6 desaturase in teleosts: a review, Aquaculture, 315, 131, 10.1016/j.aquaculture.2010.11.031
Vandesompele, 2002, Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes, Genome Biol., 3
Whyte, 2007, The innate immune response of finfish - A review of current knowledge, Fish Shellfish Immunol., 23, 1127, 10.1016/j.fsi.2007.06.005
Widdicombe, 2008, Predicting the impact of ocean acidification on benthic biodiversity: what can animal physiology tell us?, J. Exp. Mar. Biol. Ecol., 366, 187, 10.1016/j.jembe.2008.07.024
Zheng, 2005, Highly unsaturated fatty acid synthesis in vertebrates: new insights with the cloning and characterization of a delta6 desaturase of Atlantic salmon, Lipids, 40, 13, 10.1007/s11745-005-1355-7
Zheng, 2004, Effects of diets containing vegetable oil on expression of genes involved in highly unsaturated fatty acid biosynthesis in liver of Atlantic salmon (Salmo salar), Aquaculture, 236, 467, 10.1016/j.aquaculture.2004.02.003