Disease-suppressive compost enhances natural soil suppressiveness against soil-borne plant pathogens: A critical review

Abbasi, 2002, Effect of compost amendments on disease severity and yield of tomato in conventional and organic production systems, Plant Dis., 86, 156, 10.1094/PDIS.2002.86.2.156 Alabouvette, 1999, Fusarium wilt suppressive soils: an example of disease-suppressive soils, Australas. Plant Pathol., 28, 57, 10.1071/AP99008 Angelopoulou, 2014, Biological control agents (BCAs) of V. dahliae wilt: influence of application rates and delivery method on plant protection, triggering of host defense mechanisms and rhizosphere populations of BCAs, Plant Pathol., 63, 1062, 10.1111/ppa.12198 Araujo, 2015, Soil microbial properties after 5 years of consecutive amendment with composted tannery sludge, Environ. Monit. Assess., 187, 1, 10.1007/s10661-014-4153-3 Asirifi, 1994, Suppression of Sclerotinia soft rot of lettuce with organic soil amendments, Anim. Prod. Sci., 34, 131, 10.1071/EA9940131 Avilés, 2017, Identifying characteristics of V. dahliae wilt suppressiveness in olive mill composts, Plant Dis., 101, 1568, 10.1094/PDIS-08-16-1172-RE Avilés, 2011, Review on compost as an inducer of disease suppression in plants grown in soilless culture, Dyn. Soil Dyn. Plant, 5, 1 Baker, 1974 Baum, 2015, Impact of organic amendments on the suppression of Fusarium wilt, 46, 353 Berendsen, 2012, The rhizosphere microbiome and plant health, Trends Plant Sci., 17, 478, 10.1016/j.tplants.2012.04.001 Bernard, 2012, Compost, rapeseed rotation, and biocontrol agents significantly impact soil microbial communities in organic and conventional potato production systems, Appl. Soil Ecol., 52, 29, 10.1016/j.apsoil.2011.10.002 Bevivino, 2014, Soil bacterial community Resp.onse to differences in agricultural management along with seasonal changes in a mediterranean region, PloS One, 9, 10.1371/journal.pone.0105515 Bhadauria, 2012, Ecofriendly management of Fusarium wilt of brinjal, Ecol. Environ. Conserv., 18, 1049 Bisen, 2015, Unrealized potential of seed biopriming for versatile agriculture, 193 Blagodatskaya, 2013, Active microorganisms in soil: critical review of estimation criteria and approaches, Soil Biol. Biochem., 67, 192, 10.1016/j.soilbio.2013.08.024 Blaya, 2016, Microbiota characterization of compost using omics approaches opens new perspectives for Phytophthora root rot control, PloS One, 11, 1, 10.1371/journal.pone.0158048 Blaya, 2013, Changes induced by Trichoderma harzianum in suppressive compost controlling Fusarium wilt, Pestic. Biochem. Physiol., 107, 112, 10.1016/j.pestbp.2013.06.001 Boehm, 1997, Cross-polarized magic-angle spinning 13C nuclear magnetic resonance spectroscopic characterization of soil organic matter relative to culturable bacterial species composition and sustained biological control of Pythium root rot, Appl. Environ. Microbiol., 63, 162, 10.1128/AEM.63.1.162-168.1997 Bonanomi, 2010, Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases, Soil Biol. Biochem., 42, 136, 10.1016/j.soilbio.2009.10.012 Bonanomi, 2007, Suppression of soilborne fungal diseases with organic amendments, J. Plant Pathol., 89, 311 Bonilla, 2012, Enhancing soil quality and plant health through suppressive organic amendments, Diversity, 4, 475, 10.3390/d4040475 Borrero, 2002, Composted cork as suppressive substrate to Verticilium wilt of tomato, 1342 Borrero, 2004, Predictive factors for the suppression of fusarium wilt of tomato in plant growth media, Phytopathology, 94, 1094, 10.1094/PHYTO.2004.94.10.1094 Bosco, 2017, Biological management of Fusarium wilt of tomato using biofortified vermicompost, Mycosphere, 8, 1 Bossio, 1995, Impact of carbon and flooding on the metabolic diversity of microbial communities in soils, Appl. Environ. Microbiol., 61, 4043, 10.1128/AEM.61.11.4043-4050.1995 Bouizgarne, 2013, Bacteria for plant growth promotion and disease management, 15 Boulter, 2002, Microbial studies of compost: bacterial identification, and their potential for turf grass pathogen suppression, World J. Microbiol. Biotechnol., 18, 661, 10.1023/A:1016827929432 Broadbent, 1974, Behaviour of Phytophthora cinnamomi in soils suppressive and conducive to root rot, Aust. J. Agric. Res., 25, 121, 10.1071/AR9740121 Brussaard, 2007, Soil biodiversity for agricultural sustainability, Agric. Ecosyst. Environ., 121, 233, 10.1016/j.agee.2006.12.013 Bulluck, 2002, Organic and synthetic fertility amendments influence soil microbial, physical and chemical properties on organic and conventional farms, Appl. Soil Ecol., 19, 147, 10.1016/S0929-1393(01)00187-1 Cao, 2011, Bacillus subtilis SQR 9 can control Fusarium wilt in cucumber by colonizing plant roots, Biol. Fertil. Soils, 47, 495, 10.1007/s00374-011-0556-2 Caravaca, 2002, Improvement of rhizosphere aggregate stability of afforested semiarid plant species subjected to mycorrhizal inoculation and compost addition, Geoderma, 108, 133, 10.1016/S0016-7061(02)00130-1 Carter, 1999, Interpretation of microbial biomass measurements for soil quality assessment in humid temperate regions, Can. J. Soil Sci., 79, 507, 10.4141/S99-012 Castãno, 2011, Organic matter fractions by SP-MAS 13C NMR and microbial communities involved in the suppression of fusarium wilt in organic growth media, Biol. Contr., 58, 286, 10.1016/j.biocontrol.2011.05.011 Castãno, 2013, Selection of biological control agents against tomato Fusarium wilt and evaluation in greenhouse conditions of two selected agents in three growing media, BioControl, 58, 105, 10.1007/s10526-012-9465-z Celik, 2004, Effects of compost, mycorrhiza, manure and fertilizer on some physical properties of a Chromoxerert soil, Soil Res., 78, 59 Chen, 1988, Microbial activity and biomass in container media for predicting suppressiveness to damping-off caused by Pythium ultimum, Phytopathology, 78, 1447, 10.1094/Phyto-78-1447 Chen, 1987, Factors affecting suppression of Pythium damping-off in container media amended with composts, Phytopathology, 77, 755, 10.1094/Phyto-77-755 Chilosi, 2017, Assessment of suitability and suppressiveness of on-farm green compost as a substitute of peat in the production of lavender plants, Biocontrol Sci. Technol., 27, 539, 10.1080/09583157.2017.1320353 Colwell, 1996, Microbial diversity and biotechnology, 279 Conrath, 2002, Priming in plant-pathogen interactions, Trends Plant Sci., 7, 210, 10.1016/S1360-1385(02)02244-6 Cordier, 1996, Colonisation patterns of root tissues by Phytophthora nicotianae var. parasitica related to reduced disease in mycorrhizal tomato, Plant Soil, 185, 223, 10.1007/BF02257527 Cotxarrera, 2002, Use of sewage sludge compost and Trichoderma asperellum isolates to suppress Fusarium wilt of tomato, Soil Biol. Biochem., 34, 467, 10.1016/S0038-0717(01)00205-X Coventry, 2006, Allium white rot suppression with composts and Trichoderma viridae in relation to sclerotia viability, Phytopathology, 96, 1009, 10.1094/PHYTO-96-1009 Coventry, 2005 Craft, 1996, Microbial properties of composts that suppress damping-off and root rot of creeping bentgrass caused by Pythium graminicola, Appl. Environ. Microbiol., 62, 1550, 10.1128/AEM.62.5.1550-1557.1996 Crowder, 2010, Organic agriculture promotes evenness and natural pest control, Nature, 466, 109, 10.1038/nature09183 Da Mota, 2008, Auxin production and detection of the gene coding for the auxin efflux carrier (AEC) protein in Paenibacillus polymyxa, J. Microbiol., 46, 257, 10.1007/s12275-007-0245-x De Corato, 2018, Assessing the main opportunities of integrated biorefining from agro-bioenergy co/by-products and agro-industrial residues into high-value added products associated to some emerging markets: a review, Renew. Sustain. Energy Rev., 88, 326, 10.1016/j.rser.2018.02.041 De Corato, 2019, Composts from green sources show an increased suppressiveness to soilborne plant pathogens: relationships between physicochemical properties, disease suppression, and the microbiome, Crop Protect., 124, 10.1016/j.cropro.2019.104870 De Corato, 2018, Suppression of soil-borne pathogens in container media amended with on-farm composted agro-bioenergy wastes and residues under glasshouse condition, J. Plant Dis. Prot., 125, 213 De Corato, 2018, Microbiota from ‘next-generation green compost’ improves suppressiveness of composted Municipal-Solid-Waste to soil-borne plant pathogens, Biol. Contr., 124, 1, 10.1016/j.biocontrol.2018.05.020 De Corato, 2016, Use of composted agro-energy co-products and agricultural residues against soil-borne pathogens in horticultural soil-less systems, Sci. Hortic., 210, 166, 10.1016/j.scienta.2016.07.027 de la Cruz, 1993, Carbon source control on β-glucanases, chitobiase and chitinase from Trichoderma harzianum, Ann. Microbiol., 159, 316 De Meyer, 1998, Induced systemic resistance in T. harzianum T396 biocontrol of Botrytis cinerea, Eur. J. Plant Pathol., 104, 279, 10.1023/A:1008628806616 De Weger, 1986, Siderophores and outer membrane proteins of antagonistic, plant-growth-stimulating, root-colonizing Pseudomonas sp, J. Bacteriol., 165, 585, 10.1128/JB.165.2.585-594.1986 Deepa, 2010, Plant growth-promoting activity in newly isolated Bacillus thioparus (NII-0902) from Western ghat forest, India, World J. Microbiol. Biotechnol., 26, 2277, 10.1007/s11274-010-0418-3 Dickerson, 1999, Damping-off and root rot, Biocycle, 40, 62 Dimitri, 2000, Recent growth patterns in the US organic foods market, vol. 777 Dukare, 2011, Evaluating novel microbe amended composts as biocontrol agents in tomato, Crop Protect., 30, 436, 10.1016/j.cropro.2010.12.017 Duong, 2013, Nutrient release from composts into the surrounding soil, Geoderma, 195, 42, 10.1016/j.geoderma.2012.11.010 Elliott, 1994, Biodiversity and soil resilience, 353 Ellis, 2003, Cultivation dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil, Appl. Environ. Microbiol., 69, 3223, 10.1128/AEM.69.6.3223-3230.2003 Erhart, 1999, Suppression of Pythium ultimum by biowaste composts in relation to compost microbial biomass, activity and content of phenolic compounds, J. Phytopathol., 147, 299, 10.1111/j.1439-0434.1999.tb03834.x Escuadra, 2008, Suppression of Fusarium wilt of spinach with compost amendments, J. Gen. Plant Pathol., 74, 267, 10.1007/s10327-008-0090-8 Etebu, 2012, A review of indicators of healthy agricultural soils with pea foot rot disease suppression potentials, Sustain. Agric. Res., 2, 235 Evanylo, 2008, Soil and water environmental effects of fertilizer- manure-, and compost-based fertility practices in an organic vegetable cropping system, Agric. Ecosyst. Environ., 127, 50, 10.1016/j.agee.2008.02.014 Francisco, 2016, European scale analysis of phospholipid fatty acid composition of soils to establish operating ranges, Appl. Soil Ecol., 97, 49, 10.1016/j.apsoil.2015.09.001 Garbeva, 2004, Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness, Annu. Rev. Phytopathol., 42, 243, 10.1146/annurev.phyto.42.012604.135455 García-Gil, 2000, Long-term effects of municipal solid waste compost application on soil enzyme activities and microbial biomass, Soil Biol. Biochem., 32, 1907, 10.1016/S0038-0717(00)00165-6 Garland, 1991, Classification and characterization of heterotrophic microbial communities on the basis of patterns of community level sole-carbon-source utilization, Appl. Environ. Microbiol., 57, 2351, 10.1128/AEM.57.8.2351-2359.1991 Gil, 2008, Fertilization of maize with compost from cattle manure supplemented with additional mineral nutrients, Waste Manag., 28, 1432, 10.1016/j.wasman.2007.05.009 Grayston, 1998, Selective influence of plant species on microbial diversity in the rhizosphere, Soil Biol. Biochem., 30, 369, 10.1016/S0038-0717(97)00124-7 Gregorich, 1994, Towards a minimum data set to assess soil organic-matter quality in agricultural soils, Can. J. Soil Sci., 74, 367, 10.4141/cjss94-051 Haas, 2005, Biological control of soil-borne pathogens by fluorescent pseudomonads, Nat. Rev. Microbiol., 3, 307, 10.1038/nrmicro1129 Haas, 2016, Culturable fungi in potting soils and compost, Med. Mycol., 54, 825, 10.1093/mmy/myw047 Hadar, 1986, Suppression of Pythium aphanidermatum damping-off in container media containing composted liquorice roots, Crop Protect., 5, 88, 10.1016/0261-2194(86)90086-4 Hadar, 2012, Suppressive composts: microbial ecology links between abiotic environments and healthy plants, Annu. Rev. Phytopathol., 50, 133, 10.1146/annurev-phyto-081211-172914 Haggag, 2000, Evaluation of three compost as multi-strain carriers for biofertilizer and biocontrol agents against Fusarium wilt disease of some legume plants, Arab J Biotechnol, 3, 133 Hardy, 1991, Suppression of Phytophthora nicotianae root rot by a composted eucalyptus bark mix, Aust. J. Bot., 39, 153, 10.1071/BT9910153 Harper, 1995, Preface, 5 Hemmat, 2010, Long-term impacts of municipal solid waste compost, sewage sludge and farmyard manure application on organic carbon, bulk density and consistency limits of a calcareous soil in central Iran, Soil Res., 108, 43 Hill, 2000, Methods for assessing the composition and diversity of soil microbial communities, Appl. Soil Ecol., 15, 25, 10.1016/S0929-1393(00)00069-X Hillebrand, 2008, Consequences of dominance: a review of evenness effects on local and regional ecosystem processes, Ecology, 89, 1510, 10.1890/07-1053.1 Hoitink, 1999, Biocontrol within the context of soil microbial communities: a substrate-dependent phenomenon, Annu. Rev. Phytopathol., 37, 427, 10.1146/annurev.phyto.37.1.427 Hoitink, 1993, Mechanism of suppression of soil borne plant pathogen in compost-amended substrates, 601 Hoitink, 1986, Basis for the control of soilborne plant pathogens with composts, Annu. Rev. Phytopathol., 24, 93, 10.1146/annurev.py.24.090186.000521 Hoitink, 2001, Spectrum and mechanisms of plant disease control with composts, 263 Hoitink, 1991, Status of compost-amended potting mixes naturally suppressive to soilborne diseases of floricultural crops, Plant Dis., 75, 869, 10.1094/PD-75-0869 Hoitink, 2006, Systemic resistance induced by Trichoderma sp.: interaction between the host, the pathogen, the biocontrol agent, and the soil organic matter quality, Phytopathology, 96, 186, 10.1094/PHYTO-96-0186 Hoitink, 2008 Hoitink, 1996, Suppression of plant disease by composts, 4, 373 Hoitink, 1997, Suppression of plant diseases by composts, Hortscience, 32, 184, 10.21273/HORTSCI.32.2.184 Hoitink, 1977, Suppression of Phytophthora cinnamomi in a composted hardwood bark potting medium, Phytopathology, 67, 561, 10.1094/Phyto-67-561 Holling, 1973, Resilience and stability of ecological systems, Annu. Rev. Ecol. Systemat., 4, 1, 10.1146/annurev.es.04.110173.000245 Hornby, 1983, Suppressive soils, Annu. Rev. Phytopathol., 21, 65, 10.1146/annurev.py.21.090183.000433 Hussain, 2016, Study on the biological control of fusarium wilt of tomato, J Entomol Zool Studies, 4, 525 Inbar, 1991, Hydrolysis of fluorescein diacetate in sphagnum peat container media for predicting suppressiveness to damping-off caused by Pythium ultimum, Soil Biol. Biochem., 23, 479, 10.1016/0038-0717(91)90013-A 2002, 435 Jambhulkar, 2015, Natural mechanisms of soil suppressiveness against diseases caused by Fusarium, Rhizoctonia, Pythium, and phytophthora, vol. 46, 95 Janssen, 2006, Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes, Appl. Environ. Microbiol., 72, 1719, 10.1128/AEM.72.3.1719-1728.2006 Jayaraj, 2007, Characterization of a Pseudomonas fluorescens strain from tomato rhizosphere and its use for integrated management of tomato damping-off, BioControl, 52, 683, 10.1007/s10526-006-9046-0 Jenkinson, 1988, Soil organic matter, 564 Kanaan, 2017 Kannangara, 2000, Effects of mesophilic and thermophilic composts on suppression of Fusarium root and stem rot of greenhouse cucumber, Can. J. Microbiol., 46, 1021, 10.1139/w00-082 Kefalogianni, 2017, Combined use of biocontrol agents and zeolite as a management strategy against F. oxysporum f. sp. melonis and V. dahliae wilt, BioControl, 62, 139, 10.1007/s10526-016-9778-4 Keswani, 2019, Unravelling efficient applications of agriculturally important microorganisms for alleviation of induced inter-cellular oxidative stress in crops, Acta Agric. Slov., 114, 121, 10.14720/aas.2019.114.1.14 Keswani, 2020, Antimicrobial secondary metabolites from agriculturally important bacteria as next-generation pesticides, Appl. Microbiol. Biotechnol., 104, 1013, 10.1007/s00253-019-10300-8 Keswani, 2019, Antimicrobial secondary metabolites from agriculturally important fungi as next biocontrol agents, Appl. Microbiol. Biotechnol., 103, 9287, 10.1007/s00253-019-10209-2 Khan, 2004, Systemic resistance induced by Trichoderma hamatum 382 in cucumber against Phytophthora crown rot and leaf blight, Plant Dis., 88, 280, 10.1094/PDIS.2004.88.3.280 Kilany, 2015, Microbial suppressiveness of Pythium damping-off diseases, vol. 46, 187 Kim, 1997, Effects of composts and soil amendments on soil microflora and phytophthora root and crown rot of bell pepper, Crop Protect., 16, 165, 10.1016/S0261-2194(96)00074-9 Kowalchuk, 2003, Microbial community responses to disease management soil treatments used in flower bulb cultivation, Biol. Fertil. Soils, 37, 55, 10.1007/s00374-002-0561-6 Kuzyakov, 2000, Carbon inputs by plants into the soil, Rev. J. Plant Nutr. Soil Sci., 163, 421, 10.1002/1522-2624(200008)163:4<421::AID-JPLN421>3.0.CO;2-R Lang, 2012, Control of cotton Verticillium wilt and fungal diversity of rhizosphere soils by bio-organic fertilizer, Biol. Fertil. Soils, 48, 191, 10.1007/s00374-011-0617-6 Larkin, 2008, Relative effects of biological amendments and crop rotations on soil microbial communities and soilborne diseases of potato, Soil Biol. Biochem., 40, 1341, 10.1016/j.soilbio.2007.03.005 Lazarovits, 2010, Managing soilborne disease of potatoes using ecologically based approaches, Am. J. Potato Res., 87, 401, 10.1007/s12230-010-9157-0 Lemanceau, 2008, Suppression of fusarium wilts by fluorescent pseudomonads: mechanisms and applications, Biocontrol Sci. Technol., 3, 219, 10.1080/09583159309355278 Liu, 1995, Induction of systemic resistance in cucumber against Fusarium wilting plant growth-promoting rhizobacteria, Phytopathology, 85, 695, 10.1094/Phyto-85-695 Lodha, 2002, Inactivation of Macrophomina phaseolina propagules during composting and effect of composts on dry root rot severity and on seed yield of cluster bean, Eur. J. Plant Pathol., 108, 253, 10.1023/A:1015103315068 Lorito, 1994, Synergistic interaction between fungal cell wall degrading enzymes and different antifungal compounds enhances inhibition of spore germination, Microbiology, 140, 623, 10.1099/00221287-140-3-623 Lumsden, 1983, Effect of composted sewage sludge on several soilborne pathogens and diseases, Phytopathology, 73, 1543, 10.1094/Phyto-73-1543 Mahatma, 2015, Soil suppressive microorganisms and their impact on fungal wilt pathogens, 249 Manici, 2010, Soil fungal communities as indicators for replanting new peach orchards in intensively cultivated areas, Eur. J. Agron., 33, 188, 10.1016/j.eja.2010.05.005 Manici, 2004, Effect of green manure on Pythium sp. population and microbial communities in intensive cropping systems, Plant Soil, 263, 133, 10.1023/B:PLSO.0000047720.40918.29 Martínez-Blanco, 2013, Compost benefits for agriculture evaluated by life cycle assessment. A review, Agron. Sustain. Dev., 33, 721, 10.1007/s13593-013-0148-7 Martin, 2015, Enhancing soil suppressiveness using compost and, 25 Martin, 2014, Potential of compost for controlling plant diseases, 345 Martin, 1987, The use of Pythium oligandrum for biological control of pre-emergence damping-off caused by P, ultimum. Phytopathology, 77, 1013, 10.1094/Phyto-77-1013 Matz, 2007, Biofilms as refuge against predation, 195 Maurhfiofer, 1994, Induction of systemic resistance in cucumber by Pseudomonas syringae pv. syringae, Physiol. Mol. Plant Pathol., 38, 223 Mazzola, 2004, Assessment and management of soil microbial community structure for disease suppression, Annu. Rev. Phytopathol., 42, 35, 10.1146/annurev.phyto.42.040803.140408 Mehta, 2014, Compost: its role, mechanism and impact on reducing soil-borne plant diseases, Waste Manag., 34, 607, 10.1016/j.wasman.2013.11.012 Mendes, 2011, Deciphering the rhizosphere microbiome for disease-suppressive bacteria, Science, 332, 1097, 10.1126/science.1203980 Mercado-Blanco, 2018, Belowground microbiota and the health of tree crops, Front. Microbiol., 9, 1006, 10.3389/fmicb.2018.01006 Meyer, 1986, Selective influence on populations of rhizosphere or rhizoplane bacteria and actinomycetes by mycorrhizas formed by Glomus fasciculatum, Soil Biol. Biochem., 18, 191, 10.1016/0038-0717(86)90026-X Mishra, 2015, Harnessing plant-microbe interactions for enhanced protection against phytopathogens, 111 Montes-Borrego, 2013, Linking microbial functional diversity of olive rhizosphere soil to management systems in commercial orchards in southern Spain, Agric. Ecosyst. Environ., 181, 169, 10.1016/j.agee.2013.09.021 Naeem, 2000, Plant diversity increases resistance to invasion in the absence of covarying extrinsic factors, Oikos, 91, 97, 10.1034/j.1600-0706.2000.910108.x Nair, 2012, Soil microbial biomass, functional microbial diversity, and nematode community structure as affected by cover crops and compost in an organic vegetable production system, Appl. Soil Ecol., 58, 45, 10.1016/j.apsoil.2012.03.008 Nannipieri, 2003, Microbial diversity and soil functions, Eur. J. Soil Sci., 54, 655, 10.1046/j.1351-0754.2003.0556.x Ng, 2014, Does altered rainfall regime change pesticide effects in soil? A terrestrial model ecosystem study from Mediterranean Portugal on the effects of pyrimethanil to soil microbial communities under extremes in rainfall, Appl. Soil Ecol, 84, 245, 10.1016/j.apsoil.2014.08.006 Nguyen, 2019, Biological control of fusarium root rot of Indian mulberry (Morinda officinalis How.) with consortia of agriculturally important microorganisms in Vietnam, Chem. Biol. Technol. Agric., 6, 27, 10.1186/s40538-019-0168-x Nielsen, 2002 Noble, 2011, Risks and benefits of soil amendment with composts in relation to plant pathogens, Australas. Plant Pathol., 40, 157, 10.1007/s13313-010-0025-7 Noble, 2005, Suppression of soil-borne plant diseases with composts: a review, Biocontrol Sci. Technol., 15, 3, 10.1080/09583150400015904 Noble, 2004, Eradication of plant pathogens and nematodes during composting: a review, Plant Pathol., 53, 548, 10.1111/j.0032-0862.2004.01059.x Pal, 2006, Biological control of plant pathogens, Plant Health Instructor, 2, 1117 Pane, 2015, Effects of on-farm composted tomato residues on soil biological activity and yields in a tomato cropping system, Chem. Biol. Technol. Agric., 10.1186/s40538-014-0026-9 Pane, 2013, Agricultural waste-based composts exhibiting suppressivity to diseases caused by the phytopathogenic soil-borne fungi Rhizoctonia solani and Sclerotinia minor, Appl. Soil Ecol., 65, 43, 10.1016/j.apsoil.2013.01.002 Pane, 2011, Compost amendments enhance peat suppressiveness to Pythium ultimum, Rhizoctonia solani and Sclerotinia minor, Biol. Contr., 56, 115, 10.1016/j.biocontrol.2010.10.002 Pankhurst, 1995, Evaluation of soil biological properties as potential bioindicators of soil health, Aust. J. Exp. Agric., 35, 1015, 10.1071/EA9951015 Pantelides, 2009, Mode of action of a non-pathogenic Fusarium oxysporum strain against Verticillium dahliae using Real Time QPCR analysis and biomarker transformation, Biol. Contr., 50, 30, 10.1016/j.biocontrol.2009.01.010 Pascual, 2002, Effectiveness of municipal waste compost and its humic fraction in suppressing Pythium ultimum, Microb. Ecol., 44, 59, 10.1007/s00248-001-0040-x Pascual, 2000, Long-term suppression of Pythium ultimum in arid soils using fresh and composted municipal wastes, Biol. Fertil. Soils, 30, 478, 10.1007/s003740050026 Pera, 1987, Controlling of fusarium wilt in carnation with bark compost, Biol. Waste, 22, 219, 10.1016/0269-7483(87)90026-7 Pérez-Piqueres, 2006, Response of soil microbial communities to compost amendments, Soil Biol. Biochem., 38, 460, 10.1016/j.soilbio.2005.05.025 Pharand, 2002, Cytological aspects of compost-mediated induced resistance against fusarium crown and root rot in tomato, Phytopathology, 92, 424, 10.1094/PHYTO.2002.92.4.424 Porras-Alfaro, 2014, From genus to phylum: large-subunit and internal transcribed spacer rRNA operon regions show similar classification accuracies influenced by database composition, Appl. Environ. Microbiol., 80, 829, 10.1128/AEM.02894-13 Postma, 2008, Soil suppressiveness and functional diversity of the soil microflora in organic farming systems, Soil Biol. Biochem., 40, 2394, 10.1016/j.soilbio.2008.05.023 Pratt, 2003 Proença, 2017, The microbiome of endophytic, wood colonizing bacteria from pine trees as affected by pine wilt disease, Sci. Rep., 7, 4205, 10.1038/s41598-017-04141-6 Pugliese, 2008, Selection of antagonists from compost to control soil-borne pathogens, J. Plant Dis. Prot., 115, 220, 10.1007/BF03356267 Ram, 2018, Biocontrol technology: eco-friendly approaches for sustainable agriculture, 177 Ram, 2019, Mixed PGPR consortium: an effective modulator of antioxidant network for management of collar rot in cauliflower, Arch. Phytopathol. Plant Protect., 52, 844, 10.1080/03235408.2019.1668115 Rangarajan, 2001 Ringer, 1997, Suppression of seedling damping-off disease in potting mix containing animal manure composts, Compost Sci. Util., 5, 6, 10.1080/1065657X.1997.10701869 Ruano-Rosa, 2015, Combining biocontrol agents and organics amendments to manage soil-borne phytopathogens, vol. 46, 457 Ryckeboer, 2001 Ryu, 2005, Study of mechanisms for plant growth promotion elicited by rhizobacteria in Arabidopsis thaliana, Plant Soil, 268, 285, 10.1007/s11104-004-0301-9 Saadi, 2010, Compost suppressiveness against Fusarium oxysporum was not reduced alter one-year storage under various moisture and temperature conditions, Soil Biol. Biochem., 42, 626, 10.1016/j.soilbio.2009.12.016 Santos, 2011, Tannery sludge compost amendment rates on soil microbial biomass of two different soils, Eur. J. Soil Biol., 47, 146, 10.1016/j.ejsobi.2011.01.002 Scheuerell, 2005, Suppression of seedling damping- off caused by Pythium ultimum, P. irregulare, and Rhizoctonia solani in container media amended with a diverse range of Pacific Northwest compost sources, Phytopathology, 95, 306, 10.1094/PHYTO-95-0306 Schnitzer, 2011, Soil microbes drive the classic plant diversity-productivity pattern, Ecology, 92, 296, 10.1890/10-0773.1 Scotti, 2016, On-farm compost: a useful tool to improve soil quality under intensive farming systems, Appl. Soil Ecol., 107, 13, 10.1016/j.apsoil.2016.05.004 Serra-Wittling, 1996, Increased soil suppressiveness to Fusarium wilt of flax after addition of municipal solid waste compost, Soil Biol. Biochem., 28, 1207, 10.1016/0038-0717(96)00126-5 Sharma, 2015, Comparison of biochemical and microscopic methods for quantification of arbuscular mycorrhizal fungi in soil and roots, Appl. Soil Ecol., 95, 86, 10.1016/j.apsoil.2015.06.001 Singh, 1995, Nitrogen mineralization, microbial biomass and crop yield as affected by wheat residue placement and fertilizer in a semi-arid tropical soil with minimum tillage, J. Appl. Ecol., 32, 588, 10.2307/2404655 2017 Sivan, 1989, The possible role of competition between Trichoderma harzianum and Fusarium oxysporum on rhizosphere colonization, Phytopathology, 79, 198, 10.1094/Phyto-79-198 Söderberg, 2004, The microbial community in the rhizosphere determined by community-level physiological profiles (CLPP) and direct soil- and cfu-PLFA techniques, Appl. Soil Ecol., 25, 135, 10.1016/j.apsoil.2003.08.005 Stefani, 2015, Culture-dependent and -independent methods capture different microbial community fractions in hydrocarbon-contaminated soils, PloS One, 10, 10.1371/journal.pone.0128272 Stevenson, 1994 Stockwell, 1994, Biological control of Pythium graminicola and other soilborne pathogens of turf grass with actinomycetes from composts, Phytopathology, 84, 1113 Stone, 2004, Suppression of soilborne diseases in field agricultural systems: organic matter management, cover cropping, and other cultural practices, 131 Suàrez-Estrella, 2007, Antagonistic activity of bacteria and fungi from horticultural compost against Fusarium oxysporum f. sp. melonis, Crop Protect., 26, 46, 10.1016/j.cropro.2006.04.003 Swift, 1974, Species diversity and the structure of microbial communities in terrestrial habitats, 185 Termorshuizen, 2008, Strategies of soil-borne plant pathogens in relation to disease suppression, Fungal Ecol, 1, 108, 10.1016/j.funeco.2008.10.006 Termorshuizen, 2006, Suppressiveness of 18 composts against 7 pathosystems: variability in pathogen response, Soil Biol. Biochem., 38, 2461, 10.1016/j.soilbio.2006.03.002 Tiedje, 1999, Opening the black box of soil microbial diversity, Appl. Soil Ecol., 109, 10.1016/S0929-1393(99)00026-8 Tilston, 2005, Compost increases yield and decreases take-all severity in winter wheat, Field Crop. Res., 94, 176, 10.1016/j.fcr.2005.01.003 Timmusk, 1999, Cytokinin production by Paenibacillus polymyxa, Soil Biol. Biochem., 31, 1847, 10.1016/S0038-0717(99)00113-3 Trankner, 1992, Use of agricultural and municipal organic wastes to develop suppressiveness to plant pathogens, 35 Trillas-Gay, 2006, Composts from agricultural waste and the Trichoderma asperellum strain T-34 suppress Rhizoctonia solani in cucumber seedlings, Biol. Contr., 39, 32, 10.1016/j.biocontrol.2006.05.007 Trillas-Gay, 1986, Nature of suppression of Fusarium wilt of radish in a container medium amended with composted hardwood bark, Plant Dis., 70, 1023, 10.1094/PD-70-1023 Tuitert, 1998, Suppression of Rhizoctonia solani in potting mixtures amended with compost made from organic household waste, Phytopathology, 88, 764, 10.1094/PHYTO.1998.88.8.764 Turco, 1994, Microbial indicators of soil quality, 73 Val-Moraes, 2015, Suppressiveness in different soils for Rhizoctonia solani, vol. 46, 175 van Bruggen, 2000, In search of biological indicators for soil health and disease suppression, Appl. Soil Ecol., 15, 13, 10.1016/S0929-1393(00)00068-8 van Bruggen, 2003, Integrated approaches to root disease management in organic farming systems, Australas. Plant Pathol., 32, 141, 10.1071/AP03029 Vieira, 2005, Comparison of microbial numbers in soils by using various culture media and temperatures, Microbiol. Res., 160, 197, 10.1016/j.micres.2005.01.004 Vitullo, 2013, Suppressive biomasses and antagonist bacteria for an eco-compatible control of Verticillium dahliae on nursery-grown olive plants, Int. J. Environ. Sci. Technol., 10, 209, 10.1007/s13762-012-0145-4 von der Weid, 2002, Paenibacillus brasilensis sp. nov., a novel nitrogen-fixing species isolated from the maize rhizosphere in Brazil, Int. J. Syst. Evol. Microbiol., 52, 2147 Wang, 2013, Effects of novel bioorganic fertilizer produced by Bacillus amyloliquefaciens W19 on antagonism of Fusarium wilt of banana, Biol. Fertil. Soils, 49, 435, 10.1007/s00374-012-0739-5 Wei, 1991, Induction of systemic resistance of cucumber to Colletotrichum orbiculare by select strains of plant growth-promoting rhizobacteria, Phytopathology, 81, 1508, 10.1094/Phyto-81-1508 Weller, 2002, Microbial populations responsible for specific soil suppressiveness to plant pathogens, Annu. Rev. Phytopathol., 40, 309, 10.1146/annurev.phyto.40.030402.110010 Widmer, 1998, Composted municipal waste reduces infection of citrus seedlings by Phytophthora nicotianae, Plant Dis., 82, 683, 10.1094/PDIS.1998.82.6.683 Wilsey, 2000, Biodiversity and ecosystem functioning: importance of species evenness in an old field, Ecology, 81, 887, 10.1890/0012-9658(2000)081[0887:BAEFIO]2.0.CO;2 Wittebolle, 2009, Initial community evenness favours functionality under selective stress, Nature, 458, 623, 10.1038/nature07840 Wu, 2009, Suppression of Fusarium wilt of watermelon by a bio-organic fertilizer containing combinations of antagonistic microorganisms, BioControl, 54, 287, 10.1007/s10526-008-9168-7 Yang, 2011, Formulations can affect rhizosphere colonization and biocontrol efficiency of Trichoderma harzianum SQR-T037 against Fusarium wilt of cucumbers, Biol. Fertil. Soils, 47, 239, 10.1007/s00374-010-0527-z You, 1995, Changes in microbial populations of an avocado plantation mulch suppressive to Phytophthora cinnamomi, Appl. Soil Ecol., 2, 33, 10.1016/0929-1393(95)98123-C Zaccardelli, 2013, The development and suppressive activity of soil microbial communities under compost amendment, J. Soil Sci. Plant Nutr., 13, 730 Zaccardelli, 2011, Control of corky root of tomato with compost and role of spore-forming bacteria to inhibit Pyrenochaeta lycopersici, Acta Hortic., 914, 393, 10.17660/ActaHortic.2011.914.74 Zhao, 2011, Biocontrol of Fusarium wilt disease for Cucumis melo melon using bio-organic fertilizer, Appl. Soil Ecol., 47, 67, 10.1016/j.apsoil.2010.09.010 Zhen, 2014, Effects of manure compost application on soil microbial community diversity and soil microenvironments in a temperate cropland in China, PloS One, 9, 10.1371/journal.pone.0108555