Discovery of genes expressed in Hydra embryogenesis

Aizenshtadt, 1974, Investigation of oogenesis in hydra: I. Ultrastructure of interstitial cells at early stages of their transformation into oocytes, Sov. J. Dev. Biol., 5, 9 Aizenshtadt, 1978, Investigation of oogenesis in Hydra: III. Growth and fusion of the oocytes, Sov. J. Dev. Biol., 9, 115 Aizenshtadt, 1975, Investigation of oogenesis in hydra: II. Cytophotometric determination of DNA concentration in the nuclei of somatic and sex cells, Sov. J. Dev. Biol., 5, 446 Alexandrova, 2005, Oogenesis in Hydra: nurse cells transfer cytoplasm directly to the growing oocyte, Dev. Biol., 281, 91, 10.1016/j.ydbio.2005.02.015 Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2 Bendtsen, 2004, Improved prediction of signal peptides: signalP 3.0, J. Mol. Biol., 340, 142 Berleth, 1988, The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo, EMBO J., 7, 1749, 10.1002/j.1460-2075.1988.tb03004.x Bode, 2003, Head regeneration in Hydra, Dev. Dyn., 226, 225, 10.1002/dvdy.10225 Bode, 1984, Patterning in Hydra, 213 Bosch, 2003, Ancient signals: peptides and the interpretation of positional information in ancestral metazoans, Comp. Biochem. Physiol., B Biochem. Mol. Biol., 136, 185, 10.1016/S1096-4959(03)00226-4 Bosch, 1987, Stem cells of Hydra magnipapillata can differentiate into somatic cells and germ line cells, Dev. Biol., 121, 182, 10.1016/0012-1606(87)90151-5 Bosch, 2002, Patterning and cell differentiation in Hydra: novel genes and the limits to conservation, Can. J. Zool., 80, 1670, 10.1139/z02-129 Brauer, 1891, Über die Entstehung der Geschlechtsprodukte und die Entwicklung von Tubularia mesembryanthemum Allm, Z. Wiss. Zool., 52, 551 Cao, 2002, Role of histone H3 lysine 27 methylation in Polycomb-group silencing, Science, 298, 1039, 10.1126/science.1076997 David, 1973, A quantitative method for maceration of hydra tissue, Roux' Arch. Dev. Biol., 171, 259, 10.1007/BF00577724 David, 1987, Interstitial stem cells in hydra, 389 Devon, 1995, Splinkerettes—Improved vectorettes for greater efficiency in PCR walking, Nucleic Acids Res., 23, 1644, 10.1093/nar/23.9.1644 Diatchenko, 1996, Suppression subtractive hybridisation: a method for generating differentially regulated or tissue-specific cDNA probes and libraries, Proc. Natl. Acad. Sci. U. S. A., 93, 6025, 10.1073/pnas.93.12.6025 Endl, 1999, Head specific gene expression in Hydra: complexity of DNA/protein interactions at the promoter of ks1 is inversely correlated to the head activation potential, Proc. Natl. Acad. Sci. U. S. A., 96, 1445, 10.1073/pnas.96.4.1445 Engel, 2002, Nowa, a novel protein with minicollagen Cys-rich domains, is involved in nematocyst formation in Hydra, J. Cell Sci., 115, 3923, 10.1242/jcs.00084 Fedders, 2004, A Dickkopf-3 related gene is expressed in differentiating nematocytes in the basal metazoan Hydra, Dev. Genes Evol., 214, 72, 10.1007/s00427-003-0378-9 Fennhof, 1980, Embryonic development of Tubularia crocea with special reference to the formation of the interstitial cells, 127 Fröbius, 2003, Expression of developmental genes during early embryogenesis of Hydra, Dev. Genes Evol., 213, 445, 10.1007/s00427-003-0344-6 Gierer, 1974, Hydra as a model for the development of biological form, Sci. Am., 231, 44, 10.1038/scientificamerican1274-44 Grens, 1996, CnNK-2, an NK-2 homeobox gene, has a role in patterning the basal end of the axis in hydra, Dev. Biol., 180, 473, 10.1006/dbio.1996.0321 Grens, 1999, The novel signal peptides, Pedibin and Hym-346, lower positional value thereby enhancing foot formation in hydra, Development, 126, 517, 10.1242/dev.126.3.517 Grimes, 2004, Testis-specific transcriptional control, Gene, 343, 11, 10.1016/j.gene.2004.08.021 Harm, 1903, Die Entwicklungsgeschichte von Clava squamata, Z. Wiss. Zool., 73, 115 Holstein, 2003, Cnidarians: an evolutionarily conserved model system for regeneration?, Dev. Dyn., 226, 257, 10.1002/dvdy.10227 Honegger, 1989, Oogenesis in Hydra carnea: a new model based on light and electron microscopic analyses of oocyte and nurse cell differentiation, Tissue Cell, 21, 381, 10.1016/0040-8166(89)90052-9 Kirmizis, 2004, Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27, Genes Dev., 18, 1592, 10.1101/gad.1200204 Kleer, 2003, EZH2 is a marker of aggressive breast cancer and promotes neoplastic transformation of breast epithelial cells, Proc. Natl. Acad. Sci. U. S. A., 100, 11606, 10.1073/pnas.1933744100 Kumar, 2004, MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment, Brief. Bioinform., 5, 150, 10.1093/bib/5.2.150 Kuzmichev, 2004, Different Ezh2-containing complexes target methylation of histone H1 or nucleosomal histone H3, Mol. Cell, 14, 183, 10.1016/S1097-2765(04)00185-6 Kuznetsov, 2001, Role of epithelial cells and programmed cell death in Hydra spermatogenesis, Zoology, 104, 25, 10.1078/0944-2006-00005 Leatherman, 2003, Transcriptional silencing and translational control: key features of early germline development, BioEssays, 25, 326, 10.1002/bies.10247 Letunic, 2004, SMART 4.0: towards genomic data integration, Nucleic Acids Res., 32, 142, 10.1093/nar/gkh088 Littlefield, 1985, Germ cells in Hydra oligactis males: I. Isolation of a subpopulation of interstitial cells that is developmentally restricted to sperm production, Dev. Biol., 112, 185, 10.1016/0012-1606(85)90132-0 Littlefield, 1994, Cell–cell interactions and the control of sex determination in hydra, Semin. Dev. Biol., 5, 13, 10.1006/sedb.1994.1003 Lohmann, 2000, The novel peptide HEADY specifies apical fate in a simple radially symmetric metazoan, Genes. Dev., 14, 2771, 10.1101/gad.830100 Lohmann, 1999, Silencing of developmental genes in Hydra, Dev. Biol., 214, 211, 10.1006/dbio.1999.9407 Martin, 1997, Embryogenesis in hydra, Biol. Bull., 192, 345, 10.2307/1542745 Mazumdar, 2002, How one becomes many: blastoderm cellularization in Drosophila melanogaster, BioEssays, 24, 1012, 10.1002/bies.10184 Miller, 2000, Oocyte development in Hydra involves selection from competent precursor cells, Dev. Biol., 224, 326, 10.1006/dbio.2000.9790 Munck, 1985, Cell proliferation and differentiation kinetics during spermatogenesis in Hydra carnea, Roux' Arch. Dev. Biol., 194, 247, 10.1007/BF01152170 Ng, 2000, A Drosophila ESC–E(Z) protein complex is distinct from other Polycomb group complexes and contains covalently modified ESC, Mol. Cell. Biol., 20, 3069, 10.1128/MCB.20.9.3069-3078.2000 Nishimiya-Fujisawa, 1993, Genetic analysis of developmental mechanisms in hydra: XX. Cloning of interstitial stem cells restricted to the sperm differentiation pathway in Hydra magnipapillata, Dev. Biol., 157, 1, 10.1006/dbio.1993.1106 Okamoto, 2004, Epigenetic dynamics of imprinted X inactivation during early mouse development, Science, 303, 644, 10.1126/science.1092727 Plath, 2003, Role of histone H3 lysine 27 methylation in X inactivation, Science, 300, 131, 10.1126/science.1084274 Pertea, 2003, TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets, Bioinformatics, 19, 651, 10.1093/bioinformatics/btg034 Polteva, 1980, Ultrastructure of the larvae of the marine hydroid polyp Obelia. Segregation of the interstitial cells during early larval development, Cytology, 22, 271 Qian, 1993, Molecular mechanisms of pattern formation by the BRE enhancer of the Ubx gene, EMBO J., 12, 3865, 10.1002/j.1460-2075.1993.tb06065.x Reinitz, 1990, Control of the initiation of homeotic gene expression by the gap genes giant and tailless in Drosophila, Dev. Biol., 140, 57, 10.1016/0012-1606(90)90053-L Rideout, 2001, Nuclear cloning and epigenetic reprogramming of the genome, Science, 293, 1093, 10.1126/science.1063206 Rubin, 2000, Comparative genomics of the eukaryotes, Science, 287, 2204, 10.1126/science.287.5461.2204 Sado, 2001, Regulation of imprinted X-chromosome inactivation in mice by Tsix, Development, 128, 1275, 10.1242/dev.128.8.1275 Simon, 1995, Locking in stable states of gene expression: transcriptional control during Drosophila development, Curr. Opin. Cell Biol., 7, 376, 10.1016/0955-0674(95)80093-X Steele, 2002, Developmental signaling in Hydra: what does it take to build a “simple” animal?, Dev. Biol., 248, 199, 10.1006/dbio.2002.0744 Stover, 2001, Trans-spliced leader addition to mRNAs in a cnidarian, Proc. Natl. Acad. Sci. U. S. A., 98, 5693, 10.1073/pnas.101049998 Su, 2005, Polycomb group protein ezh2 controls actin polymerization and cell signaling, Cell, 121, 425, 10.1016/j.cell.2005.02.029 Tardent, 1974, Gametogenesis in the genus hydra, Am. Zool., 14, 447, 10.1093/icb/14.2.447 Tardent, 1985, The differentiation of germ cells in Cnidaria, 163 Technau, 2003, Arrested apoptosis of nurse cells during Hydra oogenesis and embryogenesis, Dev. Biol., 260, 191, 10.1016/S0012-1606(03)00241-0 2003, The FlyBase database of the Drosophila genome projects and community literature, Nucleic Acids Res., 31, 172, 10.1093/nar/gkg094 Thomsen, 2004, Control of foot differentiation in Hydra: in vitro evidence that the NK-2 homeobox factor CnNK-2 autoregulates its own expression and uses pedibin as target gene, Mech. Dev., 121, 195, 10.1016/j.mod.2003.12.001 Valk-Lingbeek, 2004, Stem cells and cancer; the polycomb connection, Cell, 118, 409, 10.1016/j.cell.2004.08.005 Van de Vyver, 1980, A comparative study of the embryonic development of Hydrozoa Athecata, 109 Varambally, 2002, The polycomb group protein EZH2 is involved in progression of prostate cancer, Nature, 419, 624, 10.1038/nature01075 Volpe, 2001, Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi, Science, 297, 1833, 10.1126/science.1074973 Wang, 2002, The mouse PcG gene eed is required for Hox gene repression and extraembryonic development, Mamm. Genome, 13, 493, 10.1007/s00335-002-2182-7 Wang, 2003, A novel NK-type homeobox gene, ENK (early embryo specific NK), preferentially expressed in embryonic stem cells, Gene Exp. Patterns, 3, 99, 10.1016/S1567-133X(03)00005-X Weinziger, 1994, Ks1, an epithelial cell-specific gene, responds to early signals of head formation in Hydra, Development, 120, 2511, 10.1242/dev.120.9.2511