Discovery and functional characterization of microRNAs and their potential roles for gonadal development in spotted knifejaw, Oplegnathus punctatus
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics - Tập 28 - Trang 1-8 - 2018
Tài liệu tham khảo
Ambros, 2004, The functions of animal microRNAs, Nature, 431, 350, 10.1038/nature02871
Andreu-Vieyra, 2010, MLL2 is required in oocytes for bulk histone 3 lysine 4 trimethylation and transcriptional silencing, PLoS Biol., 8, 10.1371/journal.pbio.1000453
Baroiller, 2001, Environment and sex determination in farmed fish, Comp. Biochem. Physiol., Part C: Toxicol. Pharmacol., 130, 399
Bartel, 2004, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5
Bartel, 2009, MicroRNAs: target recognition and regulatory functions, Cell, 136, 215, 10.1016/j.cell.2009.01.002
Bizuayehu, 2014, MicroRNA in teleost fish, Genome Biol. Evol., 6, 1911, 10.1093/gbe/evu151
Borg, 1994, Androgens in teleost fishes, Comp. Biochem. Physiol. C: Pharmacol. Toxicol. Endocrinol., 109, 219
Burge, 2012, Rfam 11.0: 10 years of RNA families, Nucleic Acids Res., 41, D226, 10.1093/nar/gks1005
Carletti, 2010, MicroRNA 21 blocks apoptosis in mouse periovulatory granulosa cells, Biol. Reprod., 83, 286, 10.1095/biolreprod.109.081448
Chen, 2011, Expression and function of miR-27b in human glioma, Oncol. Rep., 26, 1617
Cox, 1998, A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal, Genes Dev., 12, 3715, 10.1101/gad.12.23.3715
Dabaja, 2015, Possible germ cell-Sertoli cell interactions are critical for establishing appropriate expression levels for the Sertoli cell-specific MicroRNA, miR-202-5p, in human testis, Basic Clin. Androl., 25, 2, 10.1186/s12610-015-0018-z
Dahl, 2016, Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition, Nature, 537, 548, 10.1038/nature19360
Dong, 2010, A new marine megalocytivirus from spotted knifejaw, Oplegnathus punctatus, and its pathogenicity to freshwater mandarinfish, Siniperca chuatsi, Virus Res., 147, 98, 10.1016/j.virusres.2009.10.016
Du, 2017, Comparative transcriptome analysis of ovary and testis reveals potential sex-related genes and pathways in spotted knifejaw Oplegnathus punctatus, Gene, 637, 203, 10.1016/j.gene.2017.09.055
Fedele, 2008, PATZ1 gene has a critical role in the spermatogenesis and testicular tumours, J. Pathol., 215, 39, 10.1002/path.2323
Flint, 1982, Ovarian secretion of oxytocin is stimulated by prostaglandin, Nature, 297, 587, 10.1038/297587a0
Frost, 2010, MOV10L1 is necessary for protection of spermatocytes against retrotransposons by Piwi-interacting RNAs, Proc. Natl. Acad. Sci., 107, 11847, 10.1073/pnas.1007158107
Godwin, 2003, Ecology meets endocrinology: environmental sex determination in fishes, Evol. Dev., 5, 40, 10.1046/j.1525-142X.2003.03007.x
Grant, 1999, Receptor-mediated endocytosis in the Caenorhabditis elegans oocyte, Mol. Biol. Cell, 10, 4311, 10.1091/mbc.10.12.4311
Hammes, 2005, Role of endocytosis in cellular uptake of sex steroids, Cell, 122, 751, 10.1016/j.cell.2005.06.032
He, 2004, MicroRNAs: small RNAs with a big role in gene regulation, Nat. Rev. Genet., 5, 522, 10.1038/nrg1379
Houwing, 2008, Zili is required for germ cell differentiation and meiosis in zebrafish, EMBO J., 27, 2702, 10.1038/emboj.2008.204
Huang, 2011, Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle, Int. J. Biol. Sci., 7, 1016, 10.7150/ijbs.7.1016
Huang, 2017, miR-100 promotes the proliferation of spermatogonial stem cells via regulating Stat3, Mol. Reprod. Dev., 84, 693, 10.1002/mrd.22843
Huda, 2009, Analysis of transposable element sequences using CENSOR and RepeatMasker, 323
Ishihara, 2014, Expression of the tumor suppressive miRNA-23b/27b cluster is a good prognostic marker in clear cell renal cell carcinoma, J. Urol., 192, 1822, 10.1016/j.juro.2014.07.001
Jia, 2015, Identification of micrornas in zebrafish spermatozoa, Zebrafish, 12, 387, 10.1089/zeb.2015.1115
Jing, 2014, Sex-biased miRNAs in gonad and their potential roles for testis development in yellow catfish, PLoS One, 9, 10.1371/journal.pone.0107946
Jing, 2015, A feedback regulatory loop involving p53/miR-200 and growth hormone endocrine axis controls embryo size of zebrafish, Sci. Rep., 5, 15906, 10.1038/srep15906
John, 2004, Human microRNA targets, PLoS Biol., 2, 10.1371/journal.pbio.0020363
Kamiya, 2012, A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubripes (fugu), PLoS Genet., 8, 10.1371/journal.pgen.1002798
Klattenhoff, 2008, Biogenesis and germline functions of piRNAs, Development, 135, 3, 10.1242/dev.006486
Kobayashi, 2011, β-Catenin is essential for Müllerian duct regression during male sexual differentiation, Development, 138, 1967, 10.1242/dev.056143
Kotaja, 2006, The chromatoid body of male germ cells: similarity with processing bodies and presence of Dicer and microRNA pathway components, Proc. Natl. Acad. Sci. U. S. A., 103, 2647, 10.1073/pnas.0509333103
Kuehbacher, 2008, Targeting microRNA expression to regulate angiogenesis, Trends Pharmacol. Sci., 29, 12, 10.1016/j.tips.2007.10.014
Langmead, 2009, Ultrafast and memory-efficient alignment of short DNA sequences to the human genome, Genome Biol., 10, R25, 10.1186/gb-2009-10-3-r25
Li, 2011, Repertoire of porcine microRNAs in adult ovary and testis by deep sequencing, Int. J. Biol. Sci., 7, 1045, 10.7150/ijbs.7.1045
Lin, 1997, A novel group of pumilio mutations affects the asymmetric division of germline stem cells in the Drosophila ovary, Development, 124, 2463, 10.1242/dev.124.12.2463
Lin, 2009, A role of miR-27 in the regulation of adipogenesis, FEBS J., 276, 2348, 10.1111/j.1742-4658.2009.06967.x
Liu, 2010, MicroRNAs show diverse and dynamic expression patterns in multiple tissues of Bombyx mori, BMC Genomics, 11, 85, 10.1186/1471-2164-11-85
Liu, 2014, MiR-92a inhibits porcine ovarian granulosa cell apoptosis by targeting Smad7 gene, FEBS Lett., 588, 4497, 10.1016/j.febslet.2014.10.021
Liu, 2015, Dynamic evolution and biogenesis of small RNAs during sex reversal, Sci. Rep., 5, 9999, 10.1038/srep09999
Lovasco, 2010, Accelerated ovarian aging in the absence of the transcription regulator TAF4B in mice, Biol. Reprod., 82, 23, 10.1095/biolreprod.109.077495
Ma, 2012, Characterization of the rainbow trout egg microRNA transcriptome, PLoS One, 7
Maalouf, 2016, MicroRNA in ovarian function, Cell Tissue Res., 363, 7, 10.1007/s00441-015-2307-4
MacLusky, 1981, Sexual differentiation of the central nervous system, Science, 1294, 10.1126/science.6163211
Martínez, 2014, Genetic architecture of sex determination in fish: applications to sex ratio control in aquaculture, Front. Genet., 5
Matsuda, 2002, DMY is a Y-specific DM-domain gene required for male development in the medaka fish, Nature, 417, 559, 10.1038/nature751
McBride, 2012, Identification of miRNAs associated with the follicular–luteal transition in the ruminant ovary, Reproduction, 144, 221, 10.1530/REP-12-0025
Myosho, 2012, Tracing the emergence of a novel sex-determining gene in medaka, Oryzias luzonensis, Genetics, 191, 163, 10.1534/genetics.111.137497
Nakajima, 1998, Viral diseases in cultured marine fish in Japan, Fish Pathol., 33, 181, 10.3147/jsfp.33.181
Nanda, 2002, A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes, Proc. Natl. Acad. Sci., 99, 11778, 10.1073/pnas.182314699
Niu, 2011, MicroRNA-21 regulates the self-renewal of mouse spermatogonial stem cells, Proc. Natl. Acad. Sci., 108, 12740, 10.1073/pnas.1109987108
Place, 2008, MicroRNA-373 induces expression of genes with complementary promoter sequences, Proc. Natl. Acad. Sci., 105, 1608, 10.1073/pnas.0707594105
Presslauer, 2017, Dynamics of miRNA transcriptome during gonadal development of zebrafish, Sci. Rep., 7, 10.1038/srep43850
Real, 2013, A microRNA (mmu-miR-124) prevents Sox9 expression in developing mouse ovarian cells, Biol. Reprod., 89
Reich, 2009, miRNA-dependent translational repression in the Drosophila ovary, PLoS One, 4, 10.1371/journal.pone.0004669
Ryazansky, 2014, Essential functions of microRNAs in animal reproductive organs, Mol. Biol., 48, 319, 10.1134/S0026893314030182
Shimada, 2009, Reproduction between Oplegnathus fasciatus and O. punctatus, and fertility of their interspecies, Fish. Sci., 75, 521, 10.1007/s12562-008-0029-1
Siegfried, 2010, In search of determinants: gene expression during gonadal sex differentiation, J. Fish Biol., 76, 1879, 10.1111/j.1095-8649.2010.02594.x
Sirotkin, 2009, Identification of MicroRNAs controlling human ovarian cell steroidogenesis via a genome-scale screen, J. Cell. Physiol., 219, 415, 10.1002/jcp.21689
Song, 2014, Global analysis of the ovarian microRNA transcriptome: implication for miR-2 and miR-133 regulation of oocyte meiosis in the Chinese mitten crab, Eriocheir sinensis (Crustacea: Decapoda), BMC Genomics, 15, 547, 10.1186/1471-2164-15-547
Song, 2016, PPARγ is regulated by miR-27b-3p negatively and plays an important role in porcine oocyte maturation, Biochem. Biophys. Res. Commun., 479, 224, 10.1016/j.bbrc.2016.09.046
Stefani, 2008, Small non-coding RNAs in animal development, Nat. Rev. Mol. Cell Biol., 9, 219, 10.1038/nrm2347
Su, 2012, MARF1 regulates essential oogenic processes in mice, Science, 335, 1496, 10.1126/science.1214680
Tehler, 2011, The miR-10 microRNA precursor family, RNA Biol., 8, 728, 10.4161/rna.8.5.16324
Thomson, 2009, The biogenesis and function of PIWI proteins and piRNAs: progress and prospect, Annu. Rev. Cell Dev. Biol., 25, 355, 10.1146/annurev.cellbio.24.110707.175327
Timoneda, 2012, Determination of reference microRNAs for relative quantification in porcine tissues, PLoS One, 7, 10.1371/journal.pone.0044413
Vagin, 2006, A distinct small RNA pathway silences selfish genetic elements in the germline, Science, 313, 320, 10.1126/science.1129333
Valinezhad Orang, 2014, Mechanisms of miRNA-mediated gene regulation from common downregulation to mRNA-specific upregulation, Int. J. Genomics, 2014, 10.1155/2014/970607
Vasileva, 2009, Tdrd6 is required for spermiogenesis, chromatoid body architecture, and regulation of miRNA expression, Curr. Biol., 19, 630, 10.1016/j.cub.2009.02.047
Vasudevan, 2007, AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2, Cell, 128, 1105, 10.1016/j.cell.2007.01.038
Vasudevan, 2007, Switching from repression to activation: microRNAs can up-regulate translation, Science, 318, 1931, 10.1126/science.1149460
Wainwright, 2013, SOX9 regulates microRNA miR-202-5p/3p expression during mouse testis differentiation, Biol. Reprod., 89
Wienholds, 2005, MicroRNA function in animal development, FEBS Lett., 579, 5911, 10.1016/j.febslet.2005.07.070
Wilson, 1981, The hormonal control of sexual development, Science, 1278, 10.1126/science.7010602
Woltering, 2008, MiR-10 represses HoxB1a and HoxB3a in zebrafish, PLoS One, 3, 10.1371/journal.pone.0001396
Wu, 2006, MicroRNAs direct rapid deadenylation of mRNA, Proc. Natl. Acad. Sci. U. S. A., 103, 4034, 10.1073/pnas.0510928103
Yan, 2010, Zmynd15 encodes a histone deacetylase-dependent transcriptional repressor essential for spermiogenesis and male fertility, J. Biol. Chem., 285, 31418, 10.1074/jbc.M110.116418
Yanagida, 2008, Myxosporean emaciation disease of cultured red sea bream Pagrus major and spotted knifejaw Oplegnathus punctatus, Fish Pathol., 43, 45, 10.3147/jsfp.43.45
Zheng, 2012, Blockade of pachytene piRNA biogenesis reveals a novel requirement for maintaining post-meiotic germline genome integrity, PLoS Genet., 8, 10.1371/journal.pgen.1003038
Zheng, 2010, Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway, Proc. Natl. Acad. Sci., 107, 11841, 10.1073/pnas.1003953107
Zi, 2017, Identification and comparative analysis of the ovarian microRNAs of prolific and non-prolific goats during the follicular phase using high-throughput sequencing, Sci. Rep., 7, 1921, 10.1038/s41598-017-02225-x
