Discoveries and advances in plant and animal genomics

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Bonfante P, Requena N (2011) Dating in the dark: how roots respond to fungal signals to establish arbuscular mycorrhizal symbiosis. Curr Opin Plant Biol 14:451–457. doi: 10.1016/j.pbi.2011.03.014

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Cappellini E, Collins MJ, Gilbert MTP (2014) Unlocking ancient protein palimpsests. Science 343:1320–1322. doi: 10.1126/science.1249274

Carter H, Hofree M, Ideker T (2013) Genotype to phenotype via network analysis. Curr Opin Genet Dev 23:611–621. doi: 10.1016/j.gde.2013.10.003

Carvunis AR, Ideker T (2014) Siri of the cell: what biology could learn from the iPhone. Cell 157:534–538. doi: 10.1016/j.cell.2014.03.009

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Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303:2022–2025

Chen C, Gao M, Liu J, Zhu H (2007) Fungal symbiosis in rice requires an ortholog of a legume common symbiosis gene encoding a Ca+/calmodulin-dependent protein kinase. Plant Physiol 145:1619–1628

Chen C, Ane JM, Zhu H (2008) OsIPD3, an ortholog of the Medicago truncatula DMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice. New Phytol 180:311–315

Craft D, Bangert M, Long T, Papp D, Unkelbach J (2014) Shared data for intensity modulated radiation therapy (IMRT) optimization research: the CORT dataset. GigaScience 3:37. doi: 10.1186/2047-217X-3-37

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Dutkowski J, Kramer M, Surma MA, Balakrishnan R, Cherry JM, Krogan NJ, Ideker T (2013) A gene ontology inferred from molecular networks. Nat Biotechnol 31:38–45

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Haile-Mariam M, Nieuwhof GJ, Beard KT, Konstatinov KV, Hayes BJ (2013) Comparison of heritabilities of dairy traits in Australian Holstein-Friesian cattle from genomic and pedigree data and implications for genomic evaluations. J Anim Breed Genet 130:20–31. doi: 10.1111/j.1439-0388.2013.01001.x

International Wheat Genome Sequencing Consortium (IWGSC) (2014). A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome.  Science 345. doi: 10.1126/science.1251788

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Li B, Zhang G, Willerslev E, Wang J, Wang J (2011) Genomic data from the polar bear (Ursus maritimus). Available from: doi: 10.5524/100008 . GigaScience

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Mitra K, Carvunis AR, Ramesh SK, Ideker T (2013) Integrative approaches for finding modular structure in biological networks. Nat Rev Genet 14:719–732. doi: 10.1038/nrg3552 , Review

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Rival P, de Billy F, Bono J-J, Gough C, Rosenberg C, Bensmihen S (2012) Epidermal and cortical roles of NFP and DMI3 in coordinating early steps of nodulation in Medicago truncatula. Development 139:3383–3391. doi: 10.1242/dev.081620

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