Direct and indirect effects of forest management on tree-hole inhabiting aquatic organisms and their functional traits

Augustynczik, 2019, Diversification of forest management regimes secures tree microhabitats and bird abundance under climate change, Sci. Total Environ., 650, 2717, 10.1016/j.scitotenv.2018.09.366 Barton, K., 2015. MuMIn: Multi-Model Inference. R package version 1.15.11. Bates, D., Mächler, M., Bolker, B., Walker, S., 2014. Fitting Linear Mixed-Effects Models Using lme4. Becker, 2003 Blackburn, 1999, Density, survey area, and the perfection (or otherwise) of ecologists, Oikos, 85, 570, 10.2307/3546707 Blakely, 2012, Distinctive aquatic assemblages in water-filled tree holes: a novel component of freshwater biodiversity in New Zealand temperate rainforests, Insect Conserv. Diversity, 5, 202, 10.1111/j.1752-4598.2011.00155.x Bongers, A.M.T., 1994. De Nematoden Van Nederland. Koninkkllijke Nederlandse Natuurhistorische Vereniging, Utrecht. Botta-Dukát, 2005, Rao's quadratic entropy as a measure of functional diversity based on multiple traits, J. Veg. Sci., 16, 533, 10.1111/j.1654-1103.2005.tb02393.x Burnham, 2004, Multimodel inference: understanding AIC and BIC in model selection, Soc. Met. Res., 33, 261, 10.1177/0049124104268644 Burnham, 2011, AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons, Behav. Ecol. Sociobiol., 65, 23, 10.1007/s00265-010-1029-6 Cáceres, 2002, Blowing in the wind: a field test of overland dispersal and colonization by aquatic invertebrates, Oecologia, 131, 402, 10.1007/s00442-002-0897-5 Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Meth., 7, 335, 10.1038/nmeth.f.303 Carnus, 2006, Planted forests and biodiversity, J. Forest., 104, 65 Carvalho, 1999, Forest fragmentation in central Amazonia and its effects on litter-dwelling ants, Biol. Conserv., 91, 151, 10.1016/S0006-3207(99)00079-8 Chen, W., Simpson, J., Levesque, C.A., 2016. RAM: R for Amplicon-Sequencing-Based Microbial-Ecology. Cranston, 1987, Keys to the adults, male hypopygia, fourth-instar larvae and pupae of the British mosquitoes (Culicidae) with notes on their ecology and medical importance, Sci. Publ. Freshwater Biol. Assoc., 48, 1 De Bie, 2012, Body size and dispersal mode as key traits determining metacommunity structure of aquatic organisms, Ecol. Lett., 15, 740, 10.1111/j.1461-0248.2012.01794.x Dirk, G., 1998. Wood-pasture in Dutch common Woodlands and the deforestation of the Dutch landscape. In: Kirby, K., Watkins, C. (Eds.), The ecological history of European forests. International, Wallingford, pp. 53–62. Dümmer, 2016, Varying patterns on varying scales: a metacommunity analysis of nematodes in European Lakes, PLoS ONE, 11, 10.1371/journal.pone.0151866 Edgar, 2010, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461 Ehbrecht, 2017, Quantifying stand structural complexity and its relationship with forest management, tree species diversity and microclimate, Agric. For. Meteorol., 242, 1, 10.1016/j.agrformet.2017.04.012 Elek, 2018, Taxon-specific responses to different forestry treatments in a temperate forest, Sci. Rep., 8, 16990, 10.1038/s41598-018-35159-z Ewert, 2014, Bacterial responses to fluctuations and extremes in temperature and brine salinity at the surface of Arctic winter sea ice, FEMS Microbiol. Ecol., 89, 476, 10.1111/1574-6941.12363 Fischer, 2010, Implementing large-scale and long-term functional biodiversity research: the biodiversity exploratories, Basic Appl. Ecol., 11, 473, 10.1016/j.baae.2010.07.009 Giere, 2009 Gossner, 2018, A three year study of the phenology of insect larvae (Coleoptera, Diptera) in water-filled tree holes in the canopy of a beech tree, Eur. J. Entomol., 115, 524, 10.14411/eje.2018.052 Gossner, 2016, Effects of management on aquatic tree-hole communities in temperate forests are mediated by detritus amount and water chemistry, J. Anim. Ecol., 96, 428 Gossner, 2014, Differential responses of herbivores and herbivory to management in temperate European Beech, PLoS ONE, 9, 10.1371/journal.pone.0104876 Gower, 1971, A general coefficient of similarity and some of its properties, Biometrics, 27, 857, 10.2307/2528823 Grueber, 2011, Multimodel inference in ecology and evolution: challenges and solutions, J. Evol. Biol., 24, 699, 10.1111/j.1420-9101.2010.02210.x Inagaki, 2008, Effects of thinning on leaf-fall and leaf-litter nitrogen concentration in hinoki cypress (Chamaecyparis obtusa Endlicher) plantation stands in Japan, For. Ecol. Manag., 255, 1859, 10.1016/j.foreco.2007.12.007 Jenkins, 1992, Productivity, disturbance and food web structure at a local spatial scale in experimental container habitats, Oikos, 65, 249, 10.2307/3545016 Juchheim, 2017, How management intensity and neighborhood composition affect the structure of beech (Fagus sylvatica L.) trees, Trees, 31, 1723, 10.1007/s00468-017-1581-z Junqueira, 2017, The microbiomes of blowflies and houseflies as bacterial transmission reservoirs, Sci. Rep., 7, 16324, 10.1038/s41598-017-16353-x Kahl, 2014, An index of forest management intensity based on assessment of harvested tree volume, tree species composition and dead wood origin, Nat. Conserv., 7, 15, 10.3897/natureconservation.7.7281 Kaplan, 1989, Diel fluctuations in bacterial activity on streambed substrata during vernal algal blooms: effects of temperature, water chemistry, and habitat, Limnol. Oceanogr., 34, 718, 10.4319/lo.1989.34.4.0718 Kiontke, 1996, The phoretic association of Diplogaster Coprophila Sudhaus & Rehfeld, 1990 (Diplogastridae) from cow dung with its carriers, in particular flies of the family sepsidae, Nematologica, 42, 354, 10.1163/004425996X00083 Kitching, 1972, Population studies of the immature stages of the tree-hole midge Metriocnemus martinii Thienemann (Diptera: Chironomidae), J. Anim. Ecol., 41, 53, 10.2307/3504 Kitching, 1971, An ecological study of water-filled tree-holes and their position in the woodland ecosystem, J. Anim. Ecol., 40, 281, 10.2307/3247 Kitching, 2001, Food webs in phytotelmata: “Bottom-up” and “top-down” explanations for community structure, Annu. Rev. Entomol., 46, 729, 10.1146/annurev.ento.46.1.729 Klausnitzer, B., 1996. Die Larven der Käfer Mitteleuropas (L6), Polyphaga: Teil 5. Gustav Fischer, Jena. Laliberté, 2010, A distance-based framework for measuring functional diversity from multiple traits, Ecology, 91, 299, 10.1890/08-2244.1 Lefcheck, 2016, piecewiseSEM: piecewise structural equation modelling in r for ecology, evolution, and systematics, Methods Ecol. Evol., 7, 573, 10.1111/2041-210X.12512 Maleque, 2009, Arthropods as bioindicators of sustainable forest management, with a focus on plantation forests, Appl. Entomol. Zool., 44, 1, 10.1303/aez.2009.1 Malmqvist, 2000, How does wing length relate to distribution patterns of stoneflies (Plecoptera) and mayflies (Ephemeroptera)?, Biol. Conserv., 93, 271, 10.1016/S0006-3207(99)00139-1 Miall, 1900 Newbold, 2015, Global effects of land use on local terrestrial biodiversity, Nature, 520, 45, 10.1038/nature14324 Nilsson, A.N., 1997. Aquatic insects of North Europe: a taxonomic handbook (Volume 2: Odonata, Diptera). Apollo Books, Stenstrup. Nolte, 2017, Functional traits drive ground beetle community structures in Central European forests: implications for conservation, Biol. Conserv., 213, 5, 10.1016/j.biocon.2017.06.038 Oksanen, J., Blanchet, F.G., Kindt, R., Legendre, P., O'Hara, B., Simpson, G.L., Solymos, P., Stevens, M.H.H., Wagner, H., 2017. vegan: Community Ecology Package. Paillet, 2010, Biodiversity differences between managed and unmanaged forests: meta-analysis of species richness in Europe, Conserv. Biol., 24, 101, 10.1111/j.1523-1739.2009.01399.x Paradise, 2004, Relationship of water and leaf litter variability to insects inhabiting treeholes, J. North. Am. Benthol. Soc., 23, 793, 10.1899/0887-3593(2004)023<0793:ROWALL>2.0.CO;2 Paradise, 1997, Insect species interactions and resource effects in treeholes: are helodid beetles bottom-up facilitators of midge populations?, Oecologia, 109, 303, 10.1007/s004420050088 Perry, 1978, A method of access into the crowns of emergent and canopy trees, Biotropica, 10, 155, 10.2307/2388019 Petermann, 2016, Forest management intensity affects aquatic communities in artificial tree holes, PLoS ONE, 11, 10.1371/journal.pone.0155549 Pinheiro, J.C., Bates, D.M., DebRoy, S., Sarkar, D., R Core Team, 2014. NLME: linear and nonlinear mixed effects models. R package version 3.1-118. Podani, 1999, Extending Gower's General Coefficient of Similarity to Ordinal Characters, Taxon, 48, 331, 10.2307/1224438 Pretzsch, 2016, Mixing of Scots pine (Pinus sylvestris L.) and European beech (Fagus sylvatica L.) enhances structural heterogeneity, and the effect increases with water availability, For. Ecol. Manag., 373, 149, 10.1016/j.foreco.2016.04.043 Ptatscheck, 2014, The meiofauna of artificial water-filled tree holes: colonization and bottom-up effects, Aquat. Ecol., 48, 285, 10.1007/s10452-014-9483-2 Ptatscheck, 2015, Meio- and macrofaunal communities in artificial water-filled tree holes: effects of seasonality, physical and chemical parameters, and availability of food resources, PLoS ONE, 10, 10.1371/journal.pone.0133447 Puettmann, 2012 Quast, 2013, The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucl. Acids Res., 41, D590, 10.1093/nar/gks1219 R Development Core Team, 2016. R: A language and environment for statistical computing. version 3.3.1. Rohnert, 1950, Wassererfüllte Baumhöhlen und ihre Besiedlung: ein Beitrag zur Fauna dendrolimnetica, Archiv für Hydobiologie, 44, 472 Rotheray, 1993 Rozkošný, R., Gregor, F., Pont, A., 1997. The European Fanniidae (Diptera). Vol. 2. Acta Sci. Nat. Brno 31. Sala, 2000, Global biodiversity scenarios for the year 2100, Science, 287, 1770, 10.1126/science.287.5459.1770 Schelhaas, 2003, Natural disturbances in the European forests in the 19th and 20th centuries, Glob. Change Biol., 9, 1620, 10.1046/j.1365-2486.2003.00684.x Schmidl, 2008, The insect assemblage in water filled tree-holes in a European temperate deciduous forest: community composition reflects structural, trophic and physicochemical factors, Hydrobiologia, 598, 285, 10.1007/s10750-007-9163-5 Seibold, 2018, The necessity of multitrophic approaches in community ecology, Trends Ecol. Evol., 33, 754, 10.1016/j.tree.2018.07.001 Smith, K.G.V., 1989. An introduction to the immature stages of British flies: Diptera larvae, with notes on eggs, puparia and pupae. In: Dolling, W.R., Askew, R.R. (Eds.), Handbooks for the Identification of British Insects. Royal Entomological Society of London, pp. 1–163. Srivastava, 1998, Why more productive sites have more species: an experimental test of theory using tree-hole communities, Am. Nat., 152, 510, 10.1086/286187 Stuart-Smith, 2013, Integrating abundance and functional traits reveals new global hotspots of fish diversity, Nature, 501, 539, 10.1038/nature12529 Sundermann, 2007, Key to the larval stages of aquatic true flies (Diptera), based on the operational taxa list for running waters in Germany, Ann. Limnol. - Int. J. Lim., 43, 61, 10.1051/limn/2007028 Tabachnick, 1996 Thyssen, 2010, Keys for identification of immature insects, 25 Wells, 2011, Local and landscape-scale forest attributes differ in their impact on bird assemblages across years in forest production landscapes, Basic Appl. Ecol., 12, 97, 10.1016/j.baae.2011.01.002 Yanoviak, 2001, Predation, resource availability, and community structure in Neotropical water-filled tree holes, Oecologia, 126, 125, 10.1007/s004420000493 Yanoviak, 2005, Sampling methods for water-filled tree holes and their artificial analogues, 168 Yanoviak, 2006, Land use affects macroinvertebrate community composition in phytotelmata in the Peruvian Amazon, Ann. Entomol. Soc. Am., 99, 1172, 10.1603/0013-8746(2006)99[1172:LUAMCC]2.0.CO;2 Yanoviak, 2006, Deforestation alters phytotelm habitat availability and mosquito production in the Peruvian Amazon, Ecol. Appl., 16, 1854, 10.1890/1051-0761(2006)016[1854:DAPHAA]2.0.CO;2 Yeates, 1993, Feeding habits in soil nematode families and genera–an outline for soil ecologists, J. Nematol., 25, 315 Yilmaz, 2014, The SILVA and “all-species living tree project (LTP)” taxonomic frameworks, Nucleic Acids Res., 42, D643, 10.1093/nar/gkt1209