Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

Journal of Proteome Research - Tập 9 Số 12 - Trang 6615-6622 - 2010
Karuna Chourey1, Janet Jansson1, Nathan C. VerBerkmoes1, Manesh Shah1, Krystle L. Chavarría1, Lauren M. Tom1, Eoin Brodie1, Robert L. Hettich1
1Oak Ridge National Laboratory, Tennessee, United States, and Lawrence Berkeley National Laboratory, California, United States

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Tài liệu tham khảo

Ram R. J., 2005, Science, 308, 1915, 10.1126/science.1109070

VerBerkmoes N. C., 2009, Nat. Rev. Microbiol., 7, 196, 10.1038/nrmicro2080

Wilmes P., 2009, Curr. Opin. Microbiol, 12, 310, 10.1016/j.mib.2009.03.004

DeLong E. F., 2004, Environ. Microbiol., 6, 875, 10.1111/j.1462-2920.2004.00668.x

Keller M., 2009, Microbiol. Mol. Biol. Rev., 73, 62, 10.1128/MMBR.00028-08

Cravatt B. F., 2007, Nature, 450, 991, 10.1038/nature06525

Atlas, R. M.; Unterman, R.Bioremediation;ASM Press:Washington, DC., 1999; pp666−81.

Falkowski P., 2008, Science, 320, 1034, 10.1126/science.1153213

Wingate L., 2009, Proc. Natl. Acad. Sci. U.S.A., 106, 22411, 10.1073/pnas.0905210106

Elsas J. D., 2006, Modern soil microbiology, 2, 10.1201/9781420015201

Solaiman Z., 2007, Environmental Proteomics: Extraction and Identification of Protein in Soil

Ogunseitan O. A., 2006, Soil Proteomics: Extraction and analysis of proteins from soils

Bastida F., 2009, Eur. J. Soil Sci., 60, 845, 10.1111/j.1365-2389.2009.01184.x

Benndorf D., 2007, ISME J., 1, 224, 10.1038/ismej.2007.39

Chen S., 2009, Proteomics, 9, 4970, 10.1002/pmic.200900251

Taylor E. B., 2010, Microb. Ecol., 59, 390, 10.1007/s00248-009-9593-x

Benndorf D., 2009, Biodegradation, 20, 737, 10.1007/s10532-009-9261-3

Nannipieri P., 2006, Role of Stabilised Enzymes in Microbial Ecology and Enzyme Extraction from Soil with Potential Applications in Soil Proteomics, 10.1007/3-540-29449-X_4

Schulze W. X., 2005, Oecologia, 142, 335, 10.1007/s00442-004-1698-9

Fornasier F., 2007, Soil Biol. Biochem., 39, 2682, 10.1016/j.soilbio.2007.04.024

Mahowald M. A., 2009, Proc. Natl. Acad. Sci. U.S.A., 106, 5859, 10.1073/pnas.0901529106

Elväng A. M., 2001, Environ. Microbiol., 3, 1, 10.1046/j.1462-2920.2001.00156.x

Waldrop M. P., 2006, Microb Ecol, 52, 470, 10.1007/s00248-006-9100-6

Clair S. B. S., 2009, Global Change Biol., 15, 3018, 10.1111/j.1365-2486.2009.01862.x

Thompson M. R., 2007, J. Proteome Res., 6, 1745, 10.1021/pr060502x

Holben W. E., 1988, Appl. Environ. Microbiol., 54, 703, 10.1128/aem.54.3.703-711.1988

Washburn M. P., 2001, Nat. Biotechnol., 19, 242, 10.1038/85686

McDonald W. H., 2002, Int. J. Mass Spectrom., 219, 245, 10.1016/S1387-3806(02)00563-8

Brown S. D., 2006, Mol. Cell. Proteomics, 5, 1054, 10.1074/mcp.M500394-MCP200

Thompson M. R., 2008, Anal. Chem., 80, 9517, 10.1021/ac801707s

Tringe S. G., 2005, Science, 308, 554, 10.1126/science.1107851

Eng J. K., 1994, J. Am. Soc. Mass Spectrom., 5, 976, 10.1016/1044-0305(94)80016-2

Tabb D. L., 2002, J. Proteome Res., 1, 21, 10.1021/pr015504q

Wiśniewski J. R., 2009, Nat. Methods, 6, 359, 10.1038/nmeth.1322

Gardy J. L., 2005, Bioinformatics, 21, 617, 10.1093/bioinformatics/bti057

Thompson D. K., 2010, BMC Genomics, 11, 311, 10.1186/1471-2164-11-311

Unell M., 2009, J. Proteome Res., 8, 1953, 10.1021/pr800897c

DeAngelis K. M., 2009, ISME J., 3, 168, 10.1038/ismej.2008.103

Setlow P., 1988, Annu. Rev. Microbiol., 42, 319, 10.1146/annurev.mi.42.100188.001535