Dimerization of the 3′UTR of bicoid mRNA involves a two-step mechanism
Tóm tắt
Từ khóa
Tài liệu tham khảo
Persson, 1988, Control of replication of plasmid R1, EMBO J., 7, 3279, 10.1002/j.1460-2075.1988.tb03195.x
Siemering, 1994, Mechanism of binding of the antisense and target RNAs involved in the regulation of IncB plasmid replication, J. Bacteriol., 176, 2677, 10.1128/jb.176.9.2677-2688.1994
Asano, 1998, Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5′-rUUGGCG-3′ motif in the loop sequence, J. Biol. Chem., 273, 11826, 10.1074/jbc.273.19.11826
Asano, 2000, Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?, J. Biol. Chem., 275, 1269, 10.1074/jbc.275.2.1269
Isel, 1999, Structural basis for the specificity of the initiation of HIV-1 reverse transcription, EMBO J., 18, 1038, 10.1093/emboj/18.4.1038
Berkhout, 1996, Role of the DIS hairpin in replication of human immunodeficiency virus type 1, J. Virol., 70, 6723, 10.1128/JVI.70.10.6723-6732.1996
Clever, 1996, Requirement for kissing-loop-mediated dimerization of human immunodeficiency virus RNA, J. Virol., 70, 5902, 10.1128/JVI.70.9.5902-5908.1996
Haddrick, 1996, Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1, J. Mol. Biol., 259, 58, 10.1006/jmbi.1996.0301
Paillart, 1996, A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis, J. Virol., 70, 8348, 10.1128/JVI.70.12.8348-8354.1996
Zhang, 1998, Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro, Mol. Cell, 2, 141, 10.1016/S1097-2765(00)80123-9
Guo, 1998, Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation, Mol. Cell, 2, 149, 10.1016/S1097-2765(00)80124-0
Chen, 2000, A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery, J. Biol. Chem., 275, 17510, 10.1074/jbc.M909662199
Ferrandon, 1997, RNA-RNA interaction is required for the formation of specific bicoid mRNA 3′ UTR-STAUFEN ribonucleoprotein particles, EMBO J., 16, 1751, 10.1093/emboj/16.7.1751
St Johnston, 1991, Staufen, a gene required to localize maternal RNAs in the Drosophila egg, Cell, 66, 51, 10.1016/0092-8674(91)90138-O
Micklem, 2000, Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation, EMBO J., 19, 1366, 10.1093/emboj/19.6.1366
Ferrandon, 1994, Staufen protein associates with the 3′UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner, Cell, 79, 1221, 10.1016/0092-8674(94)90013-2
Macdonald, 1988, Cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos, Nature, 336, 595, 10.1038/336595a0
Seeger, 1990, Molecular analysis of the bicoid gene from Drosophila pseudoobscura, EMBO J., 9, 2977, 10.1002/j.1460-2075.1990.tb07490.x
Paillart, 1996, A loop-loop “kissing” complex is the essential part of the dimer linkage of genomic HIV-1 RNA, Proc. Natl Acad. Sci. USA, 93, 5572, 10.1073/pnas.93.11.5572
Eguchi, 1991, Complexes formed by complementary RNA stem-loops. Their formations, structures, and interactions with ColE1 Rom protein, J. Mol. Biol., 220, 831, 10.1016/0022-2836(91)90356-B
Micklem, 1997, The mago nashi gene is required for the polarisation of the oocyte and the formation of perpendicular axes in Drosophila, Curr. Biol., 7, 468, 10.1016/S0960-9822(06)00218-1
Costa, 1997, Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection, EMBO J., 16, 3289, 10.1093/emboj/16.11.3289
Jossinet, 1999, Dimerization of HIV-1 genomic RNA of subtypes A and B, RNA, 5, 1222, 10.1017/S1355838299990982
Mujeeb, 1998, Structure of the dimer initiation complex of HIV-1 genomic RNA, Nature Struct. Biol., 5, 432, 10.1038/nsb0698-432
Dardel, 1998, Solution studies on the dimerization initiation site (DIS) of HIV-1 genomic RNA, Nucl. Acids Res., 15, 3567, 10.1093/nar/26.15.3567
Paillart, 1994, Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA, J. Biol. Chem., 269, 27486, 10.1016/S0021-9258(18)47011-1
Skripkin, 1994, Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro, Proc. Natl Acad. Sci. USA, 91, 4945, 10.1073/pnas.91.11.4945
Paillart, 1997, Non-canonical interactions in a kissing loop complex, J. Mol. Biol., 270, 36, 10.1006/jmbi.1997.1096
Skripkin, 1996, Mechanisms of inhibition of in vitro dimerization of HIV type I RNA by sense and antisense oligonucleotides, J. Biol. Chem., 271, 28812, 10.1074/jbc.271.46.28812
Lodmell, 2000, Convergence of natural and artificial evolution on an RNA loop-loop interaction, RNA, 6, 1267, 10.1017/S1355838200000698
Laughrea, 1994, A 19-nucleotide sequence upstream of the 5′ major splice donor site is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA, Biochemistry, 33, 13464, 10.1021/bi00249a035
Muriaux, 1995, Dimerization of HIV-1lai RNA at low ionic strength, J. Biol. Chem., 270, 8209, 10.1074/jbc.270.14.8209
Muriaux, 1996, NCp7 activates HIV-1lai RNA dimerization by converting a transient loop-loop complex into a stable dimer, J. Biol. Chem., 271, 33686, 10.1074/jbc.271.52.33686
Fu, 1994, Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions, J. Virol., 68, 5013, 10.1128/JVI.68.8.5013-5018.1994
Kolb, 2000, An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment, RNA, 6, 311, 10.1017/S135583820099215X
Kolb, 2000, Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA, EMBO J., 19, 5905, 10.1093/emboj/19.21.5905
Ramos, 2000, RNA recognition by a Staufen double-stranded RNA-binding domain, EMBO J., 19, 997, 10.1093/emboj/19.5.997
Temin, 1991, Sex and recombination in retroviruses, Trends Genet., 7, 71, 10.1016/0168-9525(91)90048-U
Darlix, 1995, First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses, J. Mol. Biol., 254, 523, 10.1006/jmbi.1995.0635
Gorelick, 1990, Roles of nucleocapsid cysteine arrays in retroviral assembly and replication, 257
McBride, 1996, The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures, J. Virol., 70, 2963, 10.1128/JVI.70.5.2963-2973.1996
Guo, 1987, Characterization of the small RNA of the bacteriophage phi 29 DNA packaging machine, Nucl. Acids Res., 15, 7081, 10.1093/nar/15.17.7081
Zhang, 1998, In vitro selection of bacteriophage phi29 prohead RNA aptamers for prohead binding, J. Biol. Chem., 273, 2947, 10.1074/jbc.273.5.2947
Bashirullah, 1998, RNA localization in development, Annu. Rev. Biochem., 67, 335, 10.1146/annurev.biochem.67.1.335
Macdonald, 1997, Redundant RNA recognition events in bicoid mRNA localization, RNA, 3, 1413
Maniatis, 1982