Differential pulse voltammetric studies of ethidium bromide binding to DNA

Bioelectrochemistry - Tập 68 - Trang 48-55 - 2006
S.H. Minasyan1, L.A. Tavadyan1, A.P. Antonyan2, H.G. Davtyan2, M.A. Parsadanyan2, P.O. Vardevanyan2
1Laboratory of Liquid-Phase Oxidation and Free-Radical Reactions, Institute of Chemical Physics named after A.B. Nalbandyan, NAS of Armenia, Sevak St., 5/2, 375014, Yerevan, Armenia
2Department of Biophysics, Yerevan State University, Alek Manoogyan St., 1, 375025, Yerevan, Armenia

Tài liệu tham khảo

Waring, 1981, DNA modification and cancer, Annu. Rev. Biochem., 50, 159, 10.1146/annurev.bi.50.070181.001111 Chaires, 1996, Dissecting the free energy of drug binding to DNA, Anti-Cancer Drugs, 11, 569 Chaires, 1998, Drug–DNA interaction, Curr. Opin. Struck. Biol., 8, 314, 10.1016/S0959-440X(98)80064-X Karapetian, 1996, Theoretical treatment of melting of complexes of DNA with ligands having several types of binding sites on helical and single-stranded DNA, J. Biomol. Struct. Dyn., 14, 275, 10.1080/07391102.1996.10508118 Vardevanyan, 2000, Binding of EtBr with native and denaturated poly(dA)–poly(dT), Mol. Biol. (Rus), 34, 310 Le-Pecq, 1967, Fluorescent complex between ethidium bromide and nucleic acids. Physical–chemical characterization, J. Mol. Biol., 27, 87, 10.1016/0022-2836(67)90353-1 Miller, 1980, Interactions of molecules with nucleic acids: W. Binding energies and conformational of acridine and phenanthridine compounds in the two principle and in several unconstrained dimer-duplex intercalation sites, Biopolymers, 19, 2091, 10.1002/bip.1980.360191111 Dean, 1980, Electrostatic components of drug receptor recognition: J. Structural and sequence analogues of DNA polynucleotides, Proc. R. Soc. Lond., B, 209, 453, 10.1098/rspb.1980.0107 Veselkov, 1997, The complex-formation of ethidium bromide with single-stranded non-complementary deoxytetranucleotide 5′-d(ApApGpC), Mol. Biol. (Rus), 31, 263 Patel, 1976, Ethidium bromide (dC-dG-dC-dG)2 complex in solution: intercalation and sequence specificity of drug binding at the tetranucleotide duplex level, Proc. Natl. Acad. Sci. U. S. A., 73, 3343, 10.1073/pnas.73.10.3343 Borisova, 1998, The heterogeneity of strong binding site of ethidium bromide on DNA. Fluorescent and non-fluorescent complexes, Mol. Biol. (Rus), 32, 855 Carter, 1987, Voltammetric studies of the interaction tris-(1,10-phenantroline) cobalt(III) with DNA, J. Am. Chem. Soc., 109, 7528, 10.1021/ja00258a046 Carter, 1989, Voltammetric studies of the interaction metal chelates with DNA: 2. Tris-chelated complexes of cobalt (III) and iron (II) with 1,10-phenantroline and 2,2′-bipyridine, J. Am. Chem. Soc., 111, 890, 10.1021/ja00206a020 Chu, 1998, Voltammetric studies of the interaction of daunomycin anticancer drug with DNA and analytical applications, Anal. Chim. Acta, 373, 29, 10.1016/S0003-2670(98)00362-6 Ibrahim, 2001, Voltammetric studies of the interaction of daunomycin anticancer drug with DNA and analytical applications, Anal. Chim. Acta, 446, 63, 10.1016/S0003-2670(01)01184-9 Jurandir de Souza, 2000, Zinc binding to Lambda phage DNA studies by voltammetric techniques, J. Braz. Chem. Soc., 11, 398, 10.1590/S0103-50532000000400013 Fojta, 1997, Supercoiled DNA-modified mercury electrodes: a highly sensitive tool for the detection of DNA damage, Anal. Chem. Acta, 342, 1, 10.1016/S0003-2670(96)00551-X Brabec, 2000, DNA sensor for the determination of antitumor platinum compounds, Electrochim. Acta, 45, 2929, 10.1016/S0013-4686(00)00370-4 Piedale, 2002, Electrochemically sensing of DNA–andramycin interactions, Bioelectrochemistry, 56, 81, 10.1016/S1567-5394(02)00013-0 Oliveira-Brett, 1999, Electrochemistry of DNA, vol. 37, 91 Berg, 1970, Interaction of antracyclines and antracyclinones with DNA, Z. Naturforsch., B, 25, 362, 10.1515/znb-1970-0406 Palecek, 2001, Detecting DNA hybridization and damage, Anal. Chem., 73, 74A, 10.1021/ac0123936 Wang, 1997, DNA electrochemical biosensors for environmental monitoring, Anal. Chim. Acta, 347, 1, 10.1016/S0003-2670(96)00598-3 Wang, 2002, Electrochemical nucleic acid biosensors, Anal. Chim. Acta, 469, 63, 10.1016/S0003-2670(01)01399-X Palecek, 2002, New approaches in the development of DNA sensors. Hybridization and electrochemical detection of DNA and RNA at two different surfaces, Bioelectrochemistry, 56, 85, 10.1016/S1567-5394(02)00025-7 Drummond, 2003, Electrochemical DNA sensors, Nat. Biotechnol., 21, 1192, 10.1038/nbt873 Popovich, 2002, New strategies for electrochemical nucleic acid detection, Interface, 11, 30 Tang, 1999, Electrochemical studies of the intercalation of ethidium bromide to DNA, Electroanalysis, 11, 1185, 10.1002/(SICI)1521-4109(199911)11:16<1185::AID-ELAN1185>3.0.CO;2-# Gherghi, 2003, Study of interactions between DNA–ethidium bromide (EB) and DNA–acridine orange (AO), in solution, using hanging mercury drop electrode (HMDE), Talanta, 61, 103, 10.1016/S0039-9140(03)00238-8 Fojta, 2000, Adsorptive transfer stripping AC voltammetry of DNA complexes with intercalators, Electroanalysis, 12, 926, 10.1002/1521-4109(200008)12:12<926::AID-ELAN926>3.0.CO;2-F Crothers, 1968, Calculation of binding isotherms for heterogenous polymers, Biopolymers, 6, 574, 10.1002/bip.1968.360060411 Arakelyan, 2000, Determination of constant rates of adsorption of ligand on DNA: analysis of correlation functions, J. Biomol. Struct. Dyn., 18, 231, 10.1080/07391102.2000.10506661 Xinhui, 2002, Spectroelectrochemistry study on the electrochemical reduction of ethidium bromide, Anal. Sci., 18, 645, 10.2116/analsci.18.645 Oliveira-Brett, 2002, Electrochemical oxidation mechanism of guanine and adenine using glassy carbon microelectrode, Bioelectrochemistry, 55, 61, 10.1016/S1567-5394(01)00147-5 Bond, 1980, 133 Babayan, 1988, Interaction of ethidium bromide with synthetic double-stranded polyribonucleotides, Mol. Biol. (Rus), 22, 898 Babayan, 1987, Base specificity in the interaction of ethidium with synthetic polyribonucleotides, Nucleic Acids Res., 15, 5803, 10.1093/nar/15.14.5803 Karapetian, 1998, Theoretical and experimental study of conformational transitions of complexes of DNA with ligands having several types of binding sites on different forms of DNA, 259 Krugh, 1975, Evidence for sequence preferences in the intercalative binding of ethidium bromide to dinucleoside monophosphates, J. Mol. Biol., 97, 133, 10.1016/S0022-2836(75)80031-3 Seanger, 1985, 556 Graves, 1981, Ethidium bromide and its photoreactive analogues: spectroscopic analysis of deoxyribonucleic acid binding properties, Biochemistry, 20, 1887, 10.1021/bi00510a026 Vardevanyan, 2003, The binding of ethidium bromide with DNA: interaction with single- and double-stranded structures, Exp. Mol. Med., 35, 527, 10.1038/emm.2003.68 Vardevanyan, 2005, Complex-formation of ethidium bromide with poly[d(A-T)]·poly[d(A-T)], J. Biomol. Struct. Dyn., 22, 465, 10.1080/07391102.2005.10507017