Differential induction and suppression of the potato innate immune system in response to Alfalfa mosaic virus infection

Mahgoub, 2015, Molecular, biochemical and anatomical analysis of some potato (Solanum tuberosum L.) cultivars growing in Egypt, J. Genet. Eng. Biotechnol., 13, 39, 10.1016/j.jgeb.2014.11.004 Aleem, 2018, Biodiversity and full genome sequence of potato viruses Alfalfa mosaic virus and Potato leaf roll virus in Egypt, Z. Naturforsch. C Biosci., 73, 423, 10.1515/znc-2018-0033 El-Helaly, 2012, Biological and molecular characterization of potato infecting Alfalfa mosaic virus in Egypt, Int. J. Virol., 8, 106, 10.3923/ijv.2012.106.113 Al-Saleh, 2013, Biological and molecular variability of Alfalfa mosaic virus affecting alfalfa crop in Riyadh region, Plant Pathol. J., 29, 410, 10.5423/PPJ.OA.05.2013.0050 Mangeli, 2019, Molecular and partial biological characterization of the coat protein sequences of Iranian Alfalfa mosaic virus isolates, J. Plant Pathol., 101, 735, 10.1007/s42161-019-00275-w Malko, 2019, Potato pathogens in Russia's regions: an instrumental survey with the use of real-time PCR/RT-PCR in matrix format, Pathogens, 8, 18, 10.3390/pathogens8010018 Agudelo-Romero, 2008, Changes in the gene expression profile of Arabidopsis thaliana after infection with Tobacco etch virus, Virol. J., 5, 92, 10.1186/1743-422X-5-92 Incarbone, 2013, RNA silencing and its suppression: novel insights from in planta analyses, Trends Plant Sci., 18, 382, 10.1016/j.tplants.2013.04.001 Ishibashi, 2013, The resistance protein Tm-1 inhibits formation of a Tomato mosaic virus replication protein-host membrane protein complex, J. Virol., 87, 7933, 10.1128/JVI.00743-13 Padmanabhan, 2008, Tobacco mosaic virus replicase-auxin/indole acetic acid protein interactions: reprogramming the auxin response pathway to enhance virus infection, J. Virol., 82, 2477, 10.1128/JVI.01865-07 Mandadi, 2013, Plant immune responses against viruses: how does a virus cause disease?, Plant Cell, 25, 1489, 10.1105/tpc.113.111658 Mierziak, 2014, Flavonoids as important molecules of plant interactions with the environment, Molecules, 19, 16240, 10.3390/molecules191016240 Islam, 2018, Phyto-metabolites; an impregnable shield against plant viruses, Nat. Prod. Commun., 13, 105 Boccardo, 2019, Expression of pathogenesis-related proteins in transplastomic tobacco plants confers resistance to filamentous pathogens under field trials, Sci. Rep., 9, 2791, 10.1038/s41598-019-39568-6 Ward, 1991, Differential regulation of β-1, 3-glucanase messenger RNAs in response to pathogen infection, Plant Physiol., 96, 390, 10.1104/pp.96.2.390 Van Loon, 1999, The families of pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins, Physiol. Mol. Plant Pathol., 55, 85, 10.1006/pmpp.1999.0213 Ryals, 1996, Systemic acquired resistance, Plant Cell, 8, 1809, 10.2307/3870231 Durrant, 2004, Systemic acquired resistance, Annu. Rev. Phytopathol., 10.1146/annurev.phyto.42.040803.140421 Katagiri, 2010, Understanding the plant immune system, Mol. Plant Microbe Interact., 23, 1531, 10.1094/MPMI-04-10-0099 Zhang, 2013, The genetic and molecular basis of plant resistance to pathogens, J. Genet. Genomics., 40, 23, 10.1016/j.jgg.2012.11.003 Clark, 1977, Characteristics of the microplate method of enzyme linked immunosorbent assay for the detection of plant viruses, J. Gen. Virol., 10.1099/0022-1317-34-3-475 Xu, 2006, Identification, characterization, and molecular detection of Alfalfa mosaic virus in potato, Phytopathology, 96, 1237, 10.1094/PHYTO-96-1237 Abdelkhalek, 2019, Differential expression profiles of tomato miRNAs induced by Tobacco mosaic virus, J. Agric. Sci. Technol., 21, 475 ElMorsi, 2015, Pathogenesis-related genes as tools for discovering the response of onion defence system against Iris yellow spot virus infection, Botany, 93, 735, 10.1139/cjb-2015-0017 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method, Methods, 25, 402, 10.1006/meth.2001.1262 Zitikaitė, 2008, Identification and some properties of Alfalfa mosaic alfamovirus isolated from naturally infected tomato crop, Biologija, 83, 10.2478/v10054-008-0016-6 El-Abhar, 2018, Identification, characterization and ultrastructure aspects of Alfalfa mosaic virus infecting potato (Solanum tuberosum L.) in Egypt, J. Virol. Sci., 3, 68 Akyol, 2016, Phenolic compounds in the potato and its byproducts: an overview, Int. J. Mol. Sci., 17, 835, 10.3390/ijms17060835 Huang, 2010, Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress, Plant Physiol., 153, 1526, 10.1104/pp.110.157370 Su, 2018, Endogenous salicylic acid shows different correlation with baicalin and baicalein in the medicinal plant Scutellaria baicalensis Georgi subjected to stress and exogenous salicylic acid, PloS One, 13 Dempsey, 2011, Salicylic acid biosynthesis and metabolism, Arabidopsis Book, 9, 10.1199/tab.0156 Vuorinen, 2010, Factors underpinning the responsiveness and higher levels of virus resistance realised in potato genotypes carrying virus-specific R genes, Ann. Appl. Biol., 157, 229, 10.1111/j.1744-7348.2010.00424.x Wu, 2012, The Arabidopsis NPR1 protein is a receptor for the plant defense hormone salicylic acid, Cell Rep., 1, 639, 10.1016/j.celrep.2012.05.008 Chen, 2009, Biosynthesis of salicylic acid in plants, Plant Signal. Behav., 4, 493, 10.4161/psb.4.6.8392 Backer, 2019, The nonexpressor of pathogenesis-related genes 1 (NPR1) and related family: mechanistic insights in plant disease resistance, Front. Plant Sci., 10, 102, 10.3389/fpls.2019.00102 Abdelkhalek, 2018, Polyphenolic genes expression pattern and their role in viral resistance in tomato plant infected with Tobacco mosaic virus, Biosci. Res., 15, 3349 Bazzini, 2011, Metabolic and miRNA profiling of TMV infected plants reveals biphasic temporal changes, PloS One, 6, 10.1371/journal.pone.0028466 Niggeweg, 2004, Engineering plants with increased levels of the antioxidant chlorogenic acid, Nat. Biotechnol., 22, 746, 10.1038/nbt966 Bate, 1994, Quantitative relationship between phenylalanine ammonia-lyase levels and phenylpropanoid accumulation in transgenic tobacco identifies a rate-determining step in natural product synthesis, Proc. Natl. Acad. Sci. Unit. States Am., 91, 7608, 10.1073/pnas.91.16.7608 Howles, 1996, Overexpression of L-phenylalanine ammonia-lyase in transgenic tobacco plants reveals control points for flux into phenylpropanoid biosynthesis, Plant Physiol., 112, 1617, 10.1104/pp.112.4.1617 Gutha, 2010, Modulation of flavonoid biosynthetic pathway genes and anthocyanins due to virus infection in grapevine (Vitis vinifera L.) leaves, BMC Plant Biol., 10, 187, 10.1186/1471-2229-10-187 Hanssen, 2011, Differential tomato transcriptomic responses induced by Pepino mosaic virus isolates with differential aggressiveness, Plant Physiol., 156, 301, 10.1104/pp.111.173906 Teycheney, 2001, Virus-specific spatial differences in the interference with silencing of the chs-A gene in non-transgenic petunia, J. Gen. Virol., 82, 1239, 10.1099/0022-1317-82-5-1239 Senda, 2004, Patterning of virus-infected Glycine max seed coat is associated with suppression of endogenous silencing of chalcone synthase genes, Plant Cell, 16, 807, 10.1105/tpc.019885 Koseki, 2005, The star-type color pattern in Petunia hybrida ‘Red Star’ flowers is induced by sequence-specific degradation of chalcone synthase RNA, Plant Cell Physiol., 46, 1879, 10.1093/pcp/pci192 Beffa, 1996, Decreased susceptibility to viral disease of [beta]-1, 3-glucanase-deficient plants generated by antisense transformation, Plant Cell, 8, 1001, 10.2307/3870211 Iglesias, 2000, Movement of plant viruses is delayed in a β-1,3-glucanase-deficient mutant showing a reduced plasmodesmatal size exclusion limit and enhanced callose deposition, Plant J., 21, 157, 10.1046/j.1365-313x.2000.00658.x Baebler, 2011, Dynamics of responses in compatible potato-Potato virus Y interaction are modulated by salicylic acid, PloS One, 6, 10.1371/journal.pone.0029009 Conti, 2017, Modulation of host plant immunity by Tobamovirus proteins, Ann. Bot., 119, 737 Šindelářová, 2005, Isolation of pathogenesis-related proteins from TMV-infected tobacco and their influence on infectivity of TMV, Plant Protect. Sci., 41, 52, 10.17221/2747-PPS Oide, 2013, A novel role of PR 2 in abscisic acid (ABA) mediated, pathogen‐induced callose deposition in Arabidopsis thaliana, New Phytol., 200, 1187, 10.1111/nph.12436 Makarova, 2018, Interactive responses of potato (Solanum tuberosum L.) plants to heat stress and infection with Potato virus Y, Front. Microbiol., 9, 2582, 10.3389/fmicb.2018.02582 Otulak-Kozieł, 2018, Plant cell wall dynamics in compatible and incompatible potato response to infection caused by Potato virus Y (PVYNTN), Int. J. Mol. Sci., 19, 862, 10.3390/ijms19030862 Li, 2015, Characteristic expression of wheat PR5 gene in response to infection by the leaf rust pathogen, Puccinia triticina, J. Plant Interact., 10, 132, 10.1080/17429145.2015.1036140 Jordá, 2000, Characterization of P69E and P69F, two differentially regulated genes encoding new members of the subtilisin-like proteinase family from tomato plants, Plant Physiol., 122, 67, 10.1104/pp.122.1.67 Roylawar, 2015, Comparative analysis of BABA and Piriformospora indica mediated priming of defence-related genes in tomato against early blight, Physiol. Mol. Plant Pathol., 91, 88, 10.1016/j.pmpp.2015.06.004 Padmanabhan, 2019, Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to Tomato spotted wilt tospovirus, Sci. Rep., 9, 7673, 10.1038/s41598-019-44100-x Chen, 2010, Up‐regulation of LSB1/GDU3 affects geminivirus infection by activating the salicylic acid pathway, Plant J., 62, 12, 10.1111/j.1365-313X.2009.04120.x Yang, 2016, HC-Pro viral suppressor from Tobacco vein banding mosaic virus interferes with DNA methylation and activates the salicylic acid pathway, Virology, 497, 244, 10.1016/j.virol.2016.07.024 Bol, 1993, Expression of PR protein genes in response to virus infection and other stress conditions, 268 Xayphakatsa, 2008, Gene cloning, expression, purification and characterization of rice (Oryza sativa L.) class II chitinase CHT11, Enzym. Microb. Technol., 43, 19, 10.1016/j.enzmictec.2008.03.012 Jannoey, 2017, Expression analysis of genes related to rice resistance against brown planthopper, Nilaparvata lugens, Rice Sci., 24, 163, 10.1016/j.rsci.2016.10.001 Lawton, 1992, Acidic and basic class III chitinase mRNA accumulation in response to TMV infection of tobacco, Plant Mol. Biol., 19, 735, 10.1007/BF00027070 Busam, 1997, Differential expression of chitinases in Vitis vinifera L. responding to systemic acquired resistance activators or fungal challenge, Plant Physiol., 115, 1029, 10.1104/pp.115.3.1029 Sinha, 2014, Current overview of allergens of plant pathogenesis related protein families, Sci. World J., 2014, 10.1155/2014/543195 Mandadi, 2014, Comparative analysis of antiviral responses in Brachypodium distachyon and Setaria viridis reveals conserved and unique outcomes among C3 and C4 plant defenses, Mol. Plant Microbe Interact., 27, 1277, 10.1094/MPMI-05-14-0152-R André, 2009, Gene expression changes related to the production of phenolic compounds in potato tubers grown under drought stress, Phytochemistry, 70, 1107, 10.1016/j.phytochem.2009.07.008 Wang, 2008, Differential activation and suppression of potato defence responses by Phytophthora infestans isolates representing US-1 and US-8 genotypes, Plant Pathol., 57, 1026, 10.1111/j.1365-3059.2008.01866.x Floryszak-Wieczorek, 2016, Contrasting regulation of NO and ROS in potato defense-associated metabolism in response to pathogens of different lifestyles, PloS One, 11, 10.1371/journal.pone.0163546 Dixit, 2016, Southern blight disease of tomato control by 1-aminocyclopropane-1-carboxylate (ACC) deaminase producing Paenibacillus lentimorbus B-30488, Plant Signal. Behav., 11, e1113363, 10.1080/15592324.2015.1113363