Differential diagnosis of Perkinsus species by polymerase chain reaction-restriction fragment length polymorphism assay
Tóm tắt
Từ khóa
Tài liệu tham khảo
Ray, 1966, A review of the cultured method for detecting Dermocystidium marinum, with suggested modifications and precautions, Proc Natl Shellfish Assoc, 54, 55
Ray, 1954
Bushek, 1994, Evaluation of methods using Ray's fluid Thioglycollate medium for diagnosis pf Perkinsus marinus infection in the eastern oyster, Crassostrea virginica, Annu Rev Fish Dis, 4, 201, 10.1016/0959-8030(94)90029-9
Rodríguez, 1995, A comparison of gill and hemolymph assays for the thioglycolate diagnosis of Perkinsus atlanticus (Apicomplexa, Perkinsea) in clams, Ruditapes decussatus (L) and Ruditapes philippinarum (Adams et Reeve), Aquaculture, 132, 145, 10.1016/0044-8486(94)00393-3
Ford, 1996, Diseases and defense mechanisms, 581
Villalba, 2005, Study of perkinsosis in the carpet shell clam Tapes decussatus in Galicia (NW Spain). II. Temporal pattern of disease dynamics and association with clam mortality, Dis Aquat Org, 65, 257, 10.3354/dao065257
Almeida, 1999, Whole clam culture as a quantitative diagnostic procedure of Perkinsus atlanticus (Apicomplexa, Perkinsea) in clams Ruditapes decussatus, Aquaculture, 177, 325, 10.1016/S0044-8486(99)00095-2
Novoa, 2002, Hypnospores detected by RFTM in clam (Ruditapes decussatus) tissues belong to two different protozoan organisms, Perkinsus atlanticus and a Perkinsus-like organism, Aquaculture, 209, 11, 10.1016/S0044-8486(01)00803-1
Goggin, 1994, Variation in the two internal transcribed spacers and 5.8S ribosomal RNA from five isolates of the marine parasite Perkinsus (Protista, Apicomplexa), Mol Biochem Parasitol, 65, 179, 10.1016/0166-6851(94)90126-0
Kotob, 1999, Characterization of two Perkinsus spp. from the softshell clam, Mya arenaria using the small subunit ribosomal RNA gene, J Eukaryot Microbiol, 46, 439, 10.1111/j.1550-7408.1999.tb04625.x
Casas, 2002, Study of perkinsosis in the carpet shell clam Tapes decussatus in Galicia (NW Spain). I. Identification of the aetiological agent and in vitro modulation of zoosporulation by temperature and salinity, Dis Aquat Org, 50, 51, 10.3354/dao050051
Casas, 2002, Continuous in vitro culture of the carpet shell clam Tapes decussatus protozoan parasite Perkinsus atlanticus, Dis Aquat Org, 52, 217, 10.3354/dao052217
Dungan, 2002, Two epizootic diseases in Chesapeake Bay commercial clams, Mya arenaria and Tagelus plebeius, Dis Aquat Org, 50, 67, 10.3354/dao050067
Brown, 2004, Multiple polymorphic sites at the ITS and ATAN loci in cultured isolates of Perkinsus marinus, J Eukaryot Microbiol, 51, 312, 10.1111/j.1550-7408.2004.tb00572.x
Casas, 2004, Perkinsus mediterraneus n. sp., a protistan parasite of the European flat oyster Ostrea edulis from the Balearic Islands, Mediterranean Sea, Dis Aquat Org, 58, 231, 10.3354/dao058231
Fong, 1993, Small subunit ribosomal RNA gene sequence of the oyster parasite Perkinsus marinus, Mol Mar Biol Biotechnol, 2, 346
Goggin, 1993, Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal RNA, Mol Biochem Parasitol, 60, 65, 10.1016/0166-6851(93)90029-W
Marsh, 1995, semiquantitative PCR assay for assessing Perkinsus marinus infections in the eastern oyster, Crassostrea virginica, J Parasitol, 4, 577, 10.2307/3283856
Robledo, 1998, Species-specificity and sensitivity of a PCR-based assay for Perkinsus marinus in the eastern oyster, Crassostrea virginica: a comparison with the fluid thioglycollate assay, J Parasitol, 84, 1237, 10.2307/3284680
Robledo, 2000, Characterization of the ribosomal RNA locus of Perkinsus atlanticus and development of a polymerase chain reaction-based diagnostic assay, J Parasitol, 86, 972, 10.1645/0022-3395(2000)086[0972:COTRRL]2.0.CO;2
Coss, 2001, Description of Perkinsus andrewsi n. sp. isolated from the Baltic clam (Macoma balthica) by characterization of the ribosomal RNA locus, and development of a species-specific PCR-based diagnostic assay, J Eukaryot Microbiol, 48, 52, 10.1111/j.1550-7408.2001.tb00415.x
Murrell, 2002, Synonymy of Perkinsus olseni Lester & Davis, 1981 and Perkinsus atlanticus Azevedo, 1989 and an update on the phylogenetic position of the genus Perkinsus, Bull Eur Assoc Fish Pathol, 22, 258
de la Herrán, 2000, Molecular characterization of the ribosomal RNA gene region of Perkinsus atlanticus: its use in phylogenetic analysis and as a target for a molecular diagnosis, Parasitol, 120, 345, 10.1017/S003118209900565X
Yarnall, 2000, A quantitative competitive polymerase chain reaction assay for the oyster pathogen Perkinsus marinus, J Parasitol, 86, 827, 10.1645/0022-3395(2000)086[0827:AQCPCR]2.0.CO;2
Robledo, 2002, Development of an in vitro clonal culture and characterization of the rRNA gene cluster of Perkinsus atlanticus, a protistan parasite of the clam Tapes decussatus, J Eukaryot Microbiol, 49, 414, 10.1111/j.1550-7408.2002.tb00221.x
Burreson, 2005, Molecular, morphological, and experimental evidence support the synonymy of Perkinsus chesapeaki and Perkinsus andrewsi, J Eukaryot Microbiol, 52, 258, 10.1111/j.1550-7408.2005.05-00035.x
Barber, 2000, PCR-RFLP analysis of the ITS2 region to identify Schistosoma haematobium and S. bovis from Kenya, Am J Trop Med Hyg, 62, 434, 10.4269/ajtmh.2000.62.434
D’Amelio, 2000, Genetic markers in ribosomal DNA for the identification of members of the genus Anisakis (Nematoda: ascaridoidea) defined by polymerase-chain-reaction-based restriction fragment length polymorphism, Int J Parasitol, 30, 223, 10.1016/S0020-7519(99)00178-2
Kijewska, 2000, A PCR-RFLP assay for identification of Anisakis simplex from different geographical regions, Mol Cell Probes, 4, 349, 10.1006/mcpr.2000.0322
Hine, 2001, Bonamia exitiosus n. sp. (Haplosporidia) infecting flat oysters Ostrea chilensis in New Zealand, Dis Aquat Org, 47, 63, 10.3354/dao047063
Marcilla, 2002, A PCR-RFLP assay for the distinction between Fasciola hepatica and Fasciola gigantica, Mol Cell Probes, 16, 327, 10.1006/mcpr.2002.0429
Marfurt, 2003, Identification and differentiation of Leishmania species in clinical samples by PCR amplification of the miniexon sequence and subsequent restriction fragment length polymorphism analysis, J Clin Microbiol, 41, 3147, 10.1128/JCM.41.7.3147-3153.2003
Traub, 2004, Application of a species-specific PCR-RFLP to identify Ancylostoma eggs directly from canine faeces, Vet Parasitol, 123, 245, 10.1016/j.vetpar.2004.05.026
Elsheikha, 2005, Phylogenetic congruence of Sarcocystis neurona Dubey et al., 1991 (Apicomplexa: Sarcocystidae) in the United States based on sequence analysis and restriction fragment length polymorphism (RFLP), Syst Parasitol, 61, 191, 10.1007/s11230-005-3163-5
Traversa, 2005, Molecular characterization of Thelazia lacrymalis (Nematoda, Spirurida) affecting equids: a tool for vector identification, Mol Cell Probes, 19, 245, 10.1016/j.mcp.2005.01.005
Zappulli, 2005, Direct identification of Photobacterium damselae subspecies piscicida by PCR-RFLP analysis, Dis Aquat Org, 65, 53, 10.3354/dao065053
La Peyre, 1993, In vitro propagation of the protozoan Perkinsus marinus, a pathogen of the eastern oyster, Crassostrea virginica, J. Eukaryot. Microbiol, 40, 304, 10.1111/j.1550-7408.1993.tb04920.x
La Peyre M, Casas S, La Peyre JL. Salinity effects on three Perkinsus spp. viability, metabolic activity and cellular proliferation. Dis Aquat Org (in press).
Reece, 1997, Phylogenetic analysis of Perkinsus based on actin gene sequences, J Parasitol, 83, 417, 10.2307/3284403
Saldarriaga, 2003, Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage, Internat J System Evolut Microbiol, 53, 355, 10.1099/ijs.0.02328-0
Siddall, 1997, ‘Total evidence’ refutes the inclusion of Perkinsus species in the phylum Apicomplexa, Parasitol, 2, 165, 10.1017/S0031182097001157
Thompson, 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice, Nucleic Acids Res, 22, 4673, 10.1093/nar/22.22.4673
Kumar, 2004, MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment, Brief Bioinf, 5, 150, 10.1093/bib/5.2.150
Reece, 2001, Geographic distribution of Perkinsus marinus genetic strains along the Atlantic and Gulf coasts of the USA, Mar Biol, 139, 1047, 10.1007/s002270100657
Robledo, 1999, Nucleotide sequence variability in the nontranscribed spacer of the rRNA locus in the oyster parasite Perkinsus marinus, J Parasitol, 85, 650, 10.2307/3285738
Goggin, 1992, Occurrence of parasites of the genus Perkinsus in France, Bull Eur Assoc Fish Pathol, 12, 174
Breber, 1985, On-growing of the carpet-shell clam (Tapes decussatus (L.)): Two years’ experience in Venice Lagoon, Aquaculture, 44, 51, 10.1016/0044-8486(85)90041-9
da Ros, 1985, Perkinsus, a protistan threart to bivalve culture in the Mediterranean basin, Bull Eur Assoc Fish Pathol, 5, 23
Ceschia, 1991, Presenza di Perkinsus in vongole veraci (Ruditapes philippinarum) allevate nel Nord-Est Italia, Boll Soc It Patol Ittica, 5, 101
Berrilli, 1998, Monitoraggio parassitologico di Chamelea gallina (Mollusca, Bivalvia) in Adriático, Parassitology, 40, 2
Canestri-Trotti, 1999, Infezioni parassitarie in mitili (Mytilus galloprovincialis) provenienti da Goro (Ferrara-Nord Adriático-Italia), Boll Soc Ital Patol, 26, 40
Canestri-Trotti, 2000, Monitoring of infections by protozoa of the genera Nematopsis, Perkinsus and Porospora in the smooth venus clam Callista chione from the North-Western Adriatic Sea (Italy), Dis Aquat Org, 42, 157, 10.3354/dao042157
Canestri-Trotti G, Baccarani EM, Paesanti F, Turolla E. Parasitological monitoring of Musculista senhousia (Mollusca: Bivalvia), invasive marine species, in the Sacca of Goro lagoon (Ferrara-Italy). 31° Congreso SIBM, Sharm El Sheik, May 13–20, 2000. Dipartimento di Biologia Animale e Dell’Uomo, Universitá di Roma ‘La Sapienza’, p. 80.
Lester, 1981, A new Perkinsus species (Apicomplexa, Perkinsea) from the abalone Haliotis rubber, J Invertebr Pathol, 37, 181, 10.1016/0022-2011(81)90073-2
Goggin, 1987, Ocurrence of Perkinsus species (Protozoa, Apicomplexa) in bivalves from the Great Barrier Reef, Dis Aquat Org, 3, 113, 10.3354/dao003113
Goggin, 1995, Perkinsus, a prostistan parasite of abalone in Australia: a review, Mar Freshwater Res, 46, 639, 10.1071/MF9950639
Hine, 2000, A survey of some parasites and diseases of several species of bivalve mollusc in northern Western Australia, Dis Aquat Org, 40, 67, 10.3354/dao040067
Leethochavalit, 2004, Occurrence of Perkinsus sp. in undulated surf clams Paphia undulata from the Gulf of Thailand, Dis Aquat Org, 60, 165, 10.3354/dao060165
Hamaguchi, 1998, Perkinsus protozoan infection in short-necked clam Tapes (=Ruditapes) philippinarum in Japan, Fish Pathol, 33, 473, 10.3147/jsfp.33.473
Park, 2002, Development of a PCR assay for detection of the protozoan parasite Perkinsus, Korean J Environ Biol, 20, 109
Park, 2005, Use of molecular markers for species identification of Korean Perkinsus sp. isolated from Manila clams Ruditapes philippinarum, Dis Aquat Org, 66, 255, 10.3354/dao066255
Azevedo, 1989, Fine structure of Perkinsus atlanticus n. sp. (Apicomplexa, Perkinsea) parasite of the clam Ruditapes decussatus from Portugal, J Parasitol, 75, 627, 10.2307/3282915
Sagristà, 1996, Ultrastructural study of the parasite, Perkinsus atlanticus (Apicomplexa), on the clam Ruditapes philippinarum, in the Mediterranean, Sci Mar, 60, 283
Hine, 2001, Problems of applying risk analysis to aquatic organisms,, 71