Differential Gene Expression in Liver, Gill, and Olfactory Rosettes of Coho Salmon (Oncorhynchus kisutch) After Acclimation to Salinity

Assem H, Hanke W (1981) Cortisol and osmotic adjustment of the euryhaline teleost, Sarotherodon-mossambicus. Gen Comp Endocrinol 43:370–380

Baird FE, Bett KJ, MacLean C, Tee AR, Hundal HS, Taylor PM (2009) Tertiary active transport of amino acids reconstituted by coexpression of system A and L transporters in Xenopus oocytes. Am J Physiol Endocrinol Metab 297:E822–E829

Baker ME, Vidal-Dorsch DE, Ribecco C, Sprague LJ, Angert M, Lekime N, Ludka C, Martella A, Ricciardelli E, Bay SM, Gully JR, Kelley KM, Schlenk D, Carnevali O, Sasik R, Hardiman G (2013) Molecular analysis of endocrine disruption in hornyhead turbot at wasterwater outfalls in southern California using a second generation multi-species mircoarray. PLoS One 8(9):e75553

Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate - a practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol 57:289–300

Birrer SC, Reusch TBH, Roth O (2012) Salinity change impairs pipefish immune defence. Fish Shellfish Immunol 33:1238–1248

Borski RJ, Helms LMH, Richman NH, Grau EG (1991) Cortisol rapidly reduces prolactin-release and cAMP and 45Ca(2+) accumulation in the cichlid fish pituitary in vitro. Proc Natl Acad Sci U S A 88:2758–2762

Bugrim A, Nikolskaya T, Nikolsky Y (2004) Early prediction of drug metabolism and toxicity: systems biology approach and modeling. Drug Discov Today 9:127–135

Castilho PC, Buckley BA, Somero G, Block BA (2009) Heterologous hybridization to a complementary DNA microarray reveals the effect of thermal acclimation in the endothermic bluefin tuna (Thunnus orientalis). Mol Ecol 18:2092–2102

Chakravarti S, Magnuson T, Lass JH, Jepsen KJ, LaMantia C, Carroll H (1998) Lumican regulates collagen fibril assembly: skin fragility and corneal opacity in the absence of lumican. J Cell Biol 141:1277–1286

Conway G (1995) A novel gene expressed during zebrafish gastrulation identified by differential RNA display. Mech Dev 52:383–391

D’cotta HC, Gallais C, Saulier B, Prunet P (1996) Comparison between parr and smolt Atlantic salmon (Salmo salar) alpha subunit gene expression of Na+/K+ ATPase in gill tissue. Fish Physiol Biochem 15:29–39

El-Alfy A, Larsen B, Schlenk D (2002) Effect of cortisol and urea on flavin monooxygenase activity and expression in rainbow trout, Oncorhynchus mykiss. Mar Environ Res 54:275–278

Evans TG, Somero GN (2008) A microarray-based transcriptomic time-course of hyper- and hypo-osmotic stress signaling events in the euryhaline fish Gillichthys mirabilis: osmosensors to effectors. J Exp Biol 211:3636–3649

Evans TG, Hammill E, Kaukinen K et al (2011) Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration. Mol Ecol 20:4472–4489

Farghaly AM, Ezzat AA, Shabana MB (1973) Effect of temperature and salinity changes on blood characteristics of tilapia-zilli g in Egyptian littoral lakes. Comp Biochem Physiol 46:183–193

Fiol DF, Chan SY, Kültz D (2006) Identification and pathway analysis of immediate hyperosmotic stress responsive molecular mechanisms in tilapia (Oreochromis mossambicus) gill. Comp Biochem Physiol D Genomics Proteomics 1:344–356

Fiol DF, Kültz D (2007) Osmotic stress sensing and signaling in fishes. FEBS Journal 274:5790–5798

Franchi-Gazzola R, Visigalli R, Bussolati O, Dall’Asta V, Gazzola GC (1999) Adaptive increase of amino acid transport system A requires ERK1/2 activation. J Biol Chem 274:28922–28928

Franchi-Gazzola R, Dall’Asta V, Sala R et al (2006) The role of the neutral amino acid transporter SNAT2 in cell volume regulation. Acta Physiol 187:273–283

Gallagher EP, LaVire HM, Bammler TK, Stapleton PL, Beyer RP, Farin FM (2008) Hepatic expression profiling in smolting and adult coho salmon (Onchorhynchus kisutch). Environ Res 106:365–378

Ghai R, Waters P, Roumenina LT et al (2007) C1q and its growing family. Immunobiology 212:253–266

Giles MA, Vanstone WE (1976) Ontogenetic variation in multiple hemoglobins of coho salmon (Oncorhynchus-kisutch) AND effect of environmental-factors on their expression. J Fish Res Board Can 33:1144–1149

Glover V, Miles R, Matta S, Modi N, Stevenson J (2005) Glucocorticoid exposure in preterm babies predicts saliva cortisol response to immunization at 4 months. Pediatr Res 58:1233–1237

Grillasca JP, Gastaldi M, Khiri H et al (1997) Cloning and initial characterization of human and mouse spot 14 genes. FEBS Lett 401:38–42

Hardiman G, Byrnes L, Gannon F (1994) An analysis of hight expressed salmon liver genes during smoltification in the Atlantic salmon (Salmo salar). Mol Mar Biol Biotechnol 3:51–56

Hoar WS (1988) The physiology of smolting salmonids. In: Hoar WS, Randall DJ (eds) The physiology of developing fish–Part B. Viviparity and posthatching juveniles. Fish Physiology, vol11. Academic Press, New York, pp 275–343

Johnson GL, Lapadat R (2002) Mitogen-activated protein kinase pathways mediated by ERK, JNK, and p38 protein kinases. Science 298:1911–1912

Jones HN, Ashworth CJ, Page KR, McArdle HJ (2006) Cortisol stimulates system A amino acid transport and SNAT2 expression in a human placental cell line (BeWo). Am J Physiol Endocrinol Metab 291:E596–E603

Kaplan JH (2002) Biochemistry of Na, K-ATPase. Annu Rev Biochem 71:511–535

Katsuhara M (1997) Apoptosis-like cell death in barley roots under salt stress. Plant Cell Physiol 38:1091–1093

Kültz D, Avila K (2001) Mitogen-activated protein kinases are in vivo transducers of osmosensory signals in fish gill cells. Comp Biochem Physiol B Biochem Mol Biol 129:821–829

Kültz D, Burg MB (1998) Intracellular signaling in response to osmotic stress. Cell Vol Regul 123:94–109

Lambris JD (1990) The third component of complement. Chemistry and biology. Curr Topics Microbiol Immunol 153:1–251

Lee SJ, Wang-Buhler JL, Cok I et al (1998) Cloning, sequencing, and tissue expression of CYP3A27, a new member of the CYP3A subfamily from embryonic and adult rainbow trout livers. Arch Biochem Biophys 360:53–61

Lekstrom-Himes J, Xanthopoulos KG (1998) Biological role of the CCAAT enhancer-binding protein family of transcription factors. J Biol Chem 273:28545–28548

Lionetto MG, Pedersen SF, Hoffmann EK, Giordano ME, Schettino T (2002) Roles of the cytoskeleton and of protein phosphorylation events in the osmotic stress response in EEL intestinal epithelium. Cell Physiol Biochem 12:163

Mancera JM, McCormick SD (1998) Osmoregulatory actions of the GH/IGF axis in non-salmonid teleosts. Comp Biochem Physiol B Biochem Mol Biol 121:43–48

Marshall WS, Ossum CG, Hoffmann EK (2005) Hypotonic shock mediation by p38 MAPK, JNK, PKC, FAK, OSR1 and SPAK in osmosensing chloride secreting cells of killifish opercular epithelium. J Exp Biol 208:1063–1077

McCormick SD (2001) Endocrine control of osmoregulation in teleost fish. Am Zool 41:781–794

McCormick SD, Saunders RL, Macintyre AD (1989) Mitochondrial enzyme and NA+, K + −ATpase activity, and ion regulation during parr-smolt transformation of Atlantic salmon (salmo-salar). Fish Physiol Biochem 6:231–241

McLean E, Devlin RH, Byatt JC, Clarke WC, Donaldson EM (1997) Impact of a controlled release formulation of recombinant bovine growth hormone upon growth and seawater adaptation in coho (Oncorhynchus kisutch) and chinook (Oncorhynchus tshawytscha) salmon. Aquaculture 156:113–128

Moser B, Loetscher P (2001) Lymphocyte traffic control by chemokines. Nat Immunol 2:123–128

Ollivier H, Pichavant-Rafini K, Puill-Stephan E, Calves P, Nonnotte L, Nonnotte G (2006) Effects of hyposmotic stress on exocytosis in isolated turbot, Scophthalmus maximus, hepatocytes. J Comp Physiol B 176:643–652

Quinn TP (2005) The behavior and ecology of Pacific salmon and trout. American Fisheries Society, Bethesda, pp 1–320

Riar N, Crago J, Jiang WY, Maryoung LA, Gan J, Schlenk D (2013) Effects of salinity acclimation on the endocrine disruption and acute toxicity of bifenthrin in freshwater and euryhaline strains of Oncorhynchus mykiss. Environ Toxicol Chem 32:2779–2785

Richards JG, Semple JW, Bystriansky JS, Schulte PM (2003) Na+/K + −ATPase (alpha-isoform switching in gills of rainbow trout (Oncorhynchus mykiss) during salinity transfer. J Exp Biol 206:4475–4486

Rozen S, Skaletsky H (1999) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365–386

Sangiao-Alvarellos S, Laiz-Carrion R, Guzman JM et al (2003) Acclimation of S-aurata to various salinities alters energy metabolism of osmoregulatory and nonosmoregulatory organs. Am J Physiol Regul Integr Comp Physiol 285:R897–R907

Sasik R, Woelk CH, Corbeil J (2004) Microarray truths and consequences. J Mol Endocrinol 33:1–9

Schwartz LM, Osborne BA (1993) Programmed cell-death, apoptosis and killer genes. Immunol Today 14:582–590

Schweiger S, Foerster J, Lehman T et al (1999) The Opitz syndrome gene product, MID1, associates with microtubules. Proc Natl Acad Sci U S A 96:2794–2799

Seear PJ, Carmichael SN, Talbot R, Taggart JB, Bron JE, Sweeney GE (2010) Differential gene expression during smoltification of atlantic salmon (Salmo salar L.): a first large-scale microarray study. Mar Biotechnol 12:126–140

Soengas JL, Aldegunde M, Andres MD (1995) Gradual transfer to sea-water of rainbow-trout - effects on liver carbohydrate-metabolism. J Fish Biol 47:466–478

Subramanian A, Tamayo P, Mootha VK et al (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102:15545–15550

Sullivan CV, Dickhoff WW, Mahnken CVW, Hershberger WK (1985) Changes in the hemoglobin system of the coho salmon oncorhynchus-kisutch during smoltification and triiodothyronine and propylthiouracil treatment. Comp Biochem Physiol A Physiol 81:807–813

Treisman R (1996) Regulation of transcription by MAP kinase cascades. Curr Opin Cell Biol 8:205–215

Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98:5116–5121

Vanstone WE, Tsuyuki H, Roberts E (1964) Changes in multiple hemoglobin patterns of some pacific salmon genus Oncorhynchus during parr-smolt transformation. Can J Physiol Pharmacol 42:697

Wood AW, Duan CM, Bern HA (2005) Insulin-like growth factor signaling in fish. Int Rev Cytol 243:215–285

Yada T, Nakanishi T (2002) Interaction between endocrine and immune systems in fish. Int Rev Cytol 220:35–92

Yada T, Azuma T, Hyodo S, Hirano T, Grau EG, Schreck CB (2007) Differential expression of corticosteroid receptor genes in rainbow trout (Oncorhynchus mykiss) immune system in response to acute stress. Can J Fish Aquat Sci 64:1382–1389

Yada T, Hyodo S, Schreck CB (2008) Effects of seawater acclimation on mRNA levels of corticosteroid receptor genes in osmoregulatory and immune systems in trout. Gen Comp Endocrinol 156:622–627