Differential Evolutionary Dynamics of Duplicated Paralogous Adh Loci in Allotetraploid Cotton (Gossypium)
Tóm tắt
Từ khóa
Tài liệu tham khảo
Aguadé M., 2001 Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thalianaMol. Biol. Evol18:1-9
Begun D. J., C. F. Aquadro, 1992 Levels of naturally occuring DNA polymorphism correlate with recombination rates in Drosophila melanogasterNature356:519-520
Brubaker C. L., J. A. Koontz, J. F. Wendel, 1993 Bidirectional cytoplasmic and nuclear introgression in the New World cottons, Gossypium barbadense and G. hirsutum (Malvaceae) Am. J. Bot80:1203-1208
Brubaker C. L., J. F. Wendel, 1994 Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs) Am. J. Bot81:1309-1326
Caicedo A. L., B. A. Schaal, B. N. Kunkel, 1999 Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thalianaProc. Natl. Acad. Sci. USA96:302-306
Charlesworth B., M. T. Morgan, D. Charlesworth, 1993 The effect of deleterious mutations on neutral molecular variation Genetics134:1289-1303
Charlesworth D., B. Charlesworth, 1998 Sequence variation: looking for effects of genetic linkage Curr. Biol8:R658-R661
Clegg M. T., M. P. Cummings, M. L. Durbin, 1997 The evolution of plant nuclear genes Proc. Natl. Acad. Sci. USA94:7791-7798
Clement M., D. Posada, K. A. Crandall, 2000 TCS: a computer program to estimate gene genealogies Mol. Ecol9:1657-1659
Cronn R., J. F. Wendel, 1998 Simple methods for isolating homoeologous loci from allopolyploid genomes Genome41:756-762
Cronn R. C., R. L. Small, T. Haselkorn, J. F. Wendel, 2002 Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes Am. J. Bot. (in press)
Cronn R. C., R. L. Small, J. F. Wendel, 1999 Duplicated genes evolve independently after polyploid formation in cotton Proc. Natl. Acad. Sci. USA96:14406-14411
Cronn R. C., X. Zhao, A. H. Paterson, J. F. Wendel, 1996 Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons J. Mol. Evol42:685-705
Cummings M. P., M. T. Clegg, 1998 Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): an evaluation of the background selection hypothesis Proc. Natl. Acad. Sci. USA95:5637-5642
Don R. H., P. T. Cox, B. J. Wainwright, K. Baker, J. S. Mattick, 1991 ‘Touchdown’ PCR to circumvent spurious priming during gene amplification Nucleic Acids Res19:4008.
Duda T. F., S. R. Palumbi, 1999 Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod ConusProc. Natl. Acad. Sci. USA96:6820-6823
Gaut B. S., 1998 Molecular clocks and nucleotide substitution rates in higher plants Evol. Biol30:93-120
Hudson R. R., N. L. Kaplan, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences Genetics111:147-164
Hudson R. R., M. K. Kreitman, M. Aguadé, 1987 A test of neutral molecular evolution based on nucleotide data Genetics116:153-159
Innan H., F. Tajima, R. Terauchi, N. T. Miyashita, 1996 Intragenic recombination in the Adh locus of the wild plant Arabidopsis thalianaGenetics143:1761-1770
Kawabe A., H. Innan, R. Terauchi, N. T. Miyashita, 1997 Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thalianaMol. Biol. Evol14:1303-1315
Kawabe A., N. T. Miyashita, 1999 DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thalianaGenetics153:1445-1453
Klein J., A. Sato, S. Nagl, C. O'huigin, 1998 Molecular trans-species polymorphism Ann. Rev. Ecol. Syst29:1-21
Kuittinen H., M. Aguadé, 2000 Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thalianaGenetics155:863-872
Liu B., C. L. Brubaker, G. Mergeai, R. C. Cronn, J. F. Wendel, 2001 Polyploid formation in cotton is not accompanied by rapid genomic changes Genome44:321-330
Liu F., L. Zhang, D. Charlesworth, 1998 Genetic diversity in Leavenworthia populations with different inbreeding levels Proc. R. Soc. Lond. B265:293-301
Matassi G., P. M. Sharp, C. Gautier, 1999 Chromosomal location effects on gene sequence evolution in mammals Curr. Biol9:786-791
May G., F. Shaw, H. Badrane, X. Vekemans, 1999 The signature of balancing selection: fungal mating compatibility gene evolution Proc. Natl. Acad. Sci. USA96:9172-9177
McDonald J. H., M. Kreitman, 1991 Adaptive protein evolution at the Adh locus in DrosophilaNature351:652-654
Moriyama E. N., J. R. Powell, 1996 Intraspecific nuclear DNA variation in DrosophilaMol. Biol. Evol13:261-277
Posada D., K. A. Crandall, 2001 Intraspecific gene genealogies: trees grafting into networks TREE16:37-45
Przeworski M., B. Charlesworth, J. D. Wall, 1999 Genealogies and weak purifying selection Mol. Biol. Evol16:246-252
Purugganan M. D., J. I. Suddith, 1998 Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function Proc. Natl. Acad. Sci. USA95:8130-8134
Richman A. D., J. R. Kohn, 1999 Self-incompatibility alleles from Physalis: implications for historical inference from balanced genetic polymorphisms Proc. Natl. Acad. Sci. USA96:168-172
Rozas J., R. Rozas, 1999 DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis Bioinformatics15:174-175
Savolainen O., C. H. Langley, B. P. Lazzaro, H. Freville, 2000 Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thalianaMol. Biol. Evol17:645-655
Seelanan T., A. Schnabel, J. F. Wendel, 1997 Congruence and consensus in the cotton tribe (Malvaceae) Syst. Bot22:259-290
Simonsen K. L., G. A. Churchill, C. A. Aquadro, 1995 Properties of statistical tests of neutrality for DNA polymorphism data Genetics141:413-429
Small R. L., J. A. Ryburn, R. C. Cronn, T. Seelanan, J. F. Wendel, 1998 The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogenetic reconstruction in a recently diverged plant group Am. J. Bot85:1301-1315
Small R. L., J. A. Ryburn, J. F. Wendel, 1999 Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L) Mol. Biol. Evol16:491-501
Small R. L., J. F. Wendel, 2000 Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium) Genetics155:1913-1926
———. 2000 Phylogeny, duplication, and intraspecific variation of Adh sequences in New World diploid cottons (Gossypium, Malvaceae) Mol. Phylogenet. Evol16:73-84
Tajima F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism Genetics123:585-595
Vieira C. P., D. Charlesworth, 2001 Low diversity and divergence in the fil1 gene family of Antirrhinum (Scrophulariaceae) J. Mol. Evol52:171-181
Watterson G. A., 1975 On the number of segregating sites in genetical models without recombination Theor. Popul. Biol7:256-276
Wendel J. F., 1989 New World tetraploid cottons contain Old World cytoplasm Proc. Natl. Acad. Sci. USA86:4132-4136
Wendel J. F., V. A. Albert, 1992 Phylogenetics of the cotton genus (Gossypium L.): character-state weighted parsimony analysis of chloroplast DNA restriction site data and its systematic and biogeographic implications Syst. Bot17:115-143
Wendel J. F., C. L. Brubaker, A. E. Percival, 1992 Genetic diversity in Gossypium hirsutum and the origin of upland cotton Am. J. Bot79:1291-1310
Wendel J. F., A. Schnabel, T. Seelanan, 1995 Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium) Proc. Natl. Acad. Sci. USA92:280-284
Wendel J. F., R. L. Small, R. C. Cronn, C. L. Brubaker, 1999 Genes, jeans, and genomes: reconstructing the history of cotton in L. W. D. van Raamsdonk and J. C. M. den Nijs, eds Plant evolution in man-made habitats. Proceedings of VIIth International Symposium of the International Organization of Plant Biosystematists. Hugo de Vries Laboratory, Amsterdam