Dietary stachyose altered the intestinal microbiota profile and improved the intestinal mucosal barrier function of juvenile turbot, Scophthalmus maximus L.
Tài liệu tham khảo
Anderson, 2008, Tight junctions, Curr. Biol., 18, R941, 10.1016/j.cub.2008.07.083
Bai, 2017, Protective effects of mannan oligosaccharides on turbot Scophthalmus maximus suffering from soy enteropathy, Aquaculture, 476, 141, 10.1016/j.aquaculture.2017.04.005
Barreau, 2014, Intestinal barrier dysfunction triggered by invasive bacteria, Curr. Opin. Microbiol., 17, 91, 10.1016/j.mib.2013.12.003
Behr, 2003, The claudin-like megatrachea is essential in septate junctions for the epithelial barrier function in Drosophila, Dev. Cell, 5, 611, 10.1016/S1534-5807(03)00275-2
Biddle, 2013, Untangling the genetic basis of fibrolytic specialization by Lachnospiraceae and Ruminococcaceae in diverse gut communities, Diversity, 5, 627, 10.3390/d5030627
Bokulich, 2013, Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing, Nat. Methods, 10, 57, 10.1038/nmeth.2276
Caballero-Franco, 2007, The VSL# 3 probiotic formula induces mucin gene expression and secretion in colonic epithelial cells, Am. J. Physiol. Gastrointest. Liver Physiol., 292, G315, 10.1152/ajpgi.00265.2006
Cai, 2006
Cai, 2012, Effect of soybean meal, raffinose and stachyose on the growth, body composition, intestinal morphology and intestinal microflora of juvenile allogynogenetic silver crucian carp (Carassius auratus gibelio♀×Cyprinus carpio♂), Aquac. Res., 43, 128, 10.1111/j.1365-2109.2011.02811.x
Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303
Chasiotis, 2012, Permeability properties of the teleost gill epithelium under ion-poor conditions, Am. J. Phys. Regul. Integr. Comp. Phys., 302, R727
Chen, 2002, Identification and characterization of Shewanella algae as a novel pathogen of ulcer disease of fish Scinenops ocellata, Oceanologia et Limnol. Sin., 34, 1
Clemente, 2003, Early effects of gliadin on enterocyte intracellular signalling involved in intestinal barrier function, Gut, 52, 218, 10.1136/gut.52.2.218
Clements, 2014, Intestinal microbiota in fishes: what's known and what's not, Mol. Ecol., 23, 1891, 10.1111/mec.12699
Dalié, 2010, Lactic acid bacteria–potential for control of mould growth and mycotoxins: a review, Food Control, 21, 370, 10.1016/j.foodcont.2009.07.011
De Filippis, 2015
de Medina, 2014, Intestinal inflammation and mucosal barrier function, Inflamm. Bowel Dis., 20, 2394, 10.1097/MIB.0000000000000204
Denizot, 2012, Adherent-invasive Escherichia coli induce claudin-2 expression and barrier defect in CEABAC10 mice and Crohn's disease patients, Inflamm. Bowel Dis., 18, 294, 10.1002/ibd.21787
DeSantis, 2006, Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB, Appl. Environ. Microbiol., 72, 5069, 10.1128/AEM.03006-05
Drago, 2006, Gliadin, zonulin and gut permeability: effects on celiac and non-celiac intestinal mucosa and intestinal cell lines, Scand. J. Gastroenterol., 41, 408, 10.1080/00365520500235334
Duffy, 2011, Epithelial remodeling and claudin mRNA abundance in the gill and kidney of puffer fish (Tetraodon biocellatus) acclimated to altered environmental ion levels, J. Comp. Physiol. B., 181, 219, 10.1007/s00360-010-0517-3
Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604
Edgar, 2011, UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, 27, 2194, 10.1093/bioinformatics/btr381
Engevik, 2016, Lactobacillus reuteri decreases adherent tumor mucins and enhances chemotherapeutic susceptibilities via ERK/JNK pathways, FASEB J., 30, 1107.1109
Flint, 2012, The role of the gut microbiota in nutrition and health, Nat. Rev. Gastroenterol. Hepatol., 9, 577, 10.1038/nrgastro.2012.156
Forberg, 2016, Correlation between microbiota and growth in Mangrove Killifish (Kryptolebias marmoratus) and Atlantic cod (Gadus morhua), Sci. Rep., 6, 10.1038/srep21192
Gajardo, 2016, A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): a basis for comparative gut microbial research, Sci. Rep., 6, 10.1038/srep30893
Givens, 2015, Comparison of the gut microbiomes of 12 bony fish and 3 shark species, Mar. Ecol. Prog. Ser., 518, 209, 10.3354/meps11034
Hamer, 2008, The role of butyrate on colonic function, Aliment. Pharmacol. Ther., 27, 104, 10.1111/j.1365-2036.2007.03562.x
Hau, 2007, Ecology and biotechnology of the genus Shewanella, Annu. Rev. Microbiol., 61, 237, 10.1146/annurev.micro.61.080706.093257
Hu, 2015, Effects of dietary stachyose on growth performance, digestive enzyme activities and intestinal morphology of juvenile turbot (Scophthalmus maximus L), J. Ocean Univ. China, 14, 905, 10.1007/s11802-015-2587-z
Huddam, 2013, Acinetobacter lwoffii peritonitis in a patient receiving continuous ambulatory peritoneal dialysis, Ther. Apher. Dial., 17, 117, 10.1111/j.1744-9987.2012.01099.x
Huyben, 2017, Effects of dietary inclusion of the yeasts Saccharomyces cerevisiae and Wickerhamomyces anomalus on gut microbiota of rainbow trout, Aquaculture, 473, 528, 10.1016/j.aquaculture.2017.03.024
Izvekova, 2007, Symbiotic microflora in fishes of different ecological groups, Biol. Bull., 34, 610, 10.1134/S106235900706012X
Jacobs, 2009, A review of mycobacteriosis in marine fish, J. Fish Dis., 32, 119, 10.1111/j.1365-2761.2008.01016.x
Jutfelt, 2011, Barrier function of the gut, 1322
König, 2016, Human intestinal barrier function in health and disease, Clin. Translat. Gastroenterol., 7, 10.1038/ctg.2016.54
Kosińska, 2013, Modulation of tight junction integrity by food components, Food Res. Int., 54, 951, 10.1016/j.foodres.2012.12.038
Krogdahl, 2005, Carbohydrates in fish nutrition: digestion and absorption in postlarval stages, Aquac. Nutr., 11, 103, 10.1111/j.1365-2095.2004.00327.x
Leforestier, 2009, Effects of galacto-oligosaccharide ingestion on the mucosa-associated mucins and sucrase activity in the small intestine of mice, Eur. J. Nutr., 48, 457, 10.1007/s00394-009-0036-8
Li, 2013, Stachyose-enriched α-Galacto-oligosaccharides regulate gut microbiota and relieve constipation in mice, J. Agric. Food Chem., 61, 11825, 10.1021/jf404160e
Li, 2017, Dietary soya allergen β-conglycinin induces intestinal inflammatory reactions, serum-specific antibody response and growth reduction in a carnivorous fish species, turbot Scophthalmus maximus L, Aquac. Res., 48, 4022, 10.1111/are.13224
Li, 2017, Evaluation of clinical safety and beneficial effects of stachyose-enriched alpha-galacto-oligosaccharides on gut microbiota and bowel function in humans, Food Funct., 8, 262, 10.1039/C6FO01290F
Li, 2017, Effects of dietary glycinin on the growth performance, digestion, intestinal morphology and bacterial community of juvenile turbot, Scophthalmus maximus L, Aquaculture, 479, 125, 10.1016/j.aquaculture.2017.05.008
Liu, 2016, The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels, Sci. Rep., 6
Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method, Methods, 25, 402, 10.1006/meth.2001.1262
Luo, 2014, The impaired intestinal mucosal immune system by valine deficiency for young grass carp (Ctenopharyngodon idella) is associated with decreasing immune status and regulating tight junction proteins transcript abundance in the intestine, Fish Shellfish Immunol., 40, 197, 10.1016/j.fsi.2014.07.003
Magoč, 2011, FLASH: fast length adjustment of short reads to improve genome assemblies, Bioinformatics, 27, 2957, 10.1093/bioinformatics/btr507
Maloy, 2011, Intestinal homeostasis and its breakdown in inflammatory bowel disease, Nature, 474, 298, 10.1038/nature10208
Maranduba, 2015, Intestinal microbiota as modulators of the immune system and neuroimmune system: impact on the host health and homeostasis, J Immunol Res, 2015, 931574, 10.1155/2015/931574
Mattar, 2002, Probiotics up-regulate MUC-2 mucin gene expression in a Caco-2 cell-culture model, Pediatr. Surg. Int., 18, 586, 10.1007/s00383-002-0855-7
McGuckin, 2009, Intestinal barrier dysfunction in inflammatory bowel diseases, Inflamm. Bowel Dis., 15, 100, 10.1002/ibd.20539
Merrifield, 2014
Meyburgh, 2017, Lactococcus garvieae: an emerging bacterial pathogen of fish, Dis. Aquat. Org., 123, 67, 10.3354/dao03083
Mi, 2011, Effects of dietary soybean stachyose and phytic acid on gene expressions of serine proteases in Japanese flounder (Paralichthys olivaceus), J. Ocean Univ. China, 10, 234, 10.1007/s11802-011-1853-y
Mukendi, 2016, Evolution of the vertebrate claudin gene family: insights from a basal vertebrate, the sea lamprey, Int. J. Dev. Biol., 60, 39, 10.1387/ijdb.150364nn
Mussatto, 2007, Non-digestible oligosaccharides: a review, Carbohydr. Polym., 68, 587, 10.1016/j.carbpol.2006.12.011
Pacifici, 2017, Intra amniotic administration of raffinose and stachyose affects the intestinal brush border functionality and alters gut microflora populations, Nutrients, 9, 10.3390/nu9030304
Pan, 2017, The proliferation mechanism of Lactobacillus plantarum RB1 stimulated by Stachyose, Curr. Microbiol., 74, 732, 10.1007/s00284-017-1229-7
Panasevich, 2015, Modulation of the faecal microbiome of healthy adult dogs by inclusion of potato fibre in the diet, Brit. J. Nutr., 113, 125, 10.1017/S0007114514003274
Qiang, 2009, Health benefit application of functional oligosaccharides, Carbohydr. Polym., 77, 435, 10.1016/j.carbpol.2009.03.016
Rastall, 2002, Prebiotics and synbiotics: towards the next generation, Curr. Opin. Biotechnol., 13, 490, 10.1016/S0958-1669(02)00365-8
Ray, 2012, Enzyme-producing bacteria isolated from fish gut: a review, Aquac. Nutr., 18, 465, 10.1111/j.1365-2095.2012.00943.x
Ringø, 1998, Lactic acid bacteria in fish: a review, Aquaculture, 160, 177, 10.1016/S0044-8486(97)00299-8
Ringø, 2016, Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?, Aquac. Nutr., 22, 219, 10.1111/anu.12346
Saha, 1998, Cellulase activity in rohu fingerlings, Aquac. Int., 6, 281, 10.1023/A:1009210929594
Sahlmann, 2013, Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis, Fish Shellfish Immunol., 34, 599, 10.1016/j.fsi.2012.11.031
Saitoh, 2015, Structural insight into tight junction disassembly by Clostridium perfringens enterotoxin, Science, 347, 775, 10.1126/science.1261833
Scher, 2013, Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis, elife, 2, 10.7554/eLife.01202
Schmidt, 2016, Influence of fishmeal-free diets on microbial communities in Atlantic Salmon (Salmo salar) recirculation aquaculture systems, Appl. Environ. Microbiol., 82, 4470, 10.1128/AEM.00902-16
Segata, 2011, Metagenomic biomarker discovery and explanation, Genome Biol., 12, R60, 10.1186/gb-2011-12-6-r60
Sekirov, 2010, Gut microbiota in health and disease, Physiol. Rev., 90, 859, 10.1152/physrev.00045.2009
Silva, 2007, Effect of the culture conditions on the production of an extracellular protease by thermophilic Bacillus sp and some properties of the enzymatic activity, Braz. J. Microbiol., 38, 253, 10.1590/S1517-83822007000200012
Sørensen, 2011, Effect of stachyose, raffinose and soya-saponins supplementation on nutrient digestibility, digestive enzymes, gut morphology and growth performance in Atlantic salmon (Salmo salar, L), Aquaculture, 314, 145, 10.1016/j.aquaculture.2011.02.013
Sullam, 2015, Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies, ISME J., 9, 1508, 10.1038/ismej.2014.231
Sun, 2008, Decline in intestinal mucosal IL-10 expression and decreased intestinal barrier function in a mouse model of total parenteral nutrition, Am. J. Physiol. Gastrointest. Liver Physiol., 294, G139, 10.1152/ajpgi.00386.2007
Sundell, 2012, Intestinal fluid absorption in anadromous salmonids: importance of tight junctions and aquaporins, Front. Physiol., 3, 10.3389/fphys.2012.00388
Suzer, 2008, Lactobacillus spp. bacteria as probiotics in gilthead sea bream (Sparus aurata, L.) larvae: effects on growth performance and digestive enzyme activities, Aquaculture, 280, 140, 10.1016/j.aquaculture.2008.04.020
Tipsmark, 2010, Claudin-15 and-25b expression in the intestinal tract of Atlantic salmon in response to seawater acclimation, smoltification and hormone treatment, Comp. Biochem. Physiol. A Mol. Integr. Physiol., 155, 361, 10.1016/j.cbpa.2009.11.025
Tsuchiya, 2008, Novel ecological niche of Cetobacterium somerae, an anaerobic bacterium in the intestinal tracts of freshwater fish, Lett. Appl. Microbiol., 46, 43
Tsukahara, 2003, Stimulation of butyrate production in the large intestine of weaning piglets by dietary fructooligosaccharides and its influence on the histological variables of the large intestinal mucosa, J. Nutr. Sci. Vitaminol., 49, 414, 10.3177/jnsv.49.414
Turner, 2009, Intestinal mucosal barrier function in health and disease, Nat. Rev. Immunol., 9, 799, 10.1038/nri2653
Ulluwishewa, 2011, Regulation of tight junction permeability by intestinal bacteria and dietary components, J. Nutr., 141, 769, 10.3945/jn.110.135657
van Vliet, 2010, The role of intestinal microbiota in the development and severity of chemotherapy-induced mucositis, PLoS Pathog., 6, 10.1371/journal.ppat.1000879
Wen, 2014, Dietary tryptophan modulates intestinal immune response, barrier function, antioxidant status and gene expression of TOR and Nrf2 in young grass carp (Ctenopharyngodon idella), Fish Shellfish Immunol., 40, 275, 10.1016/j.fsi.2014.07.004
White, 2009, Statistical methods for detecting differentially abundant features in clinical metagenomic samples, PLoS Comput. Biol., 5, 10.1371/journal.pcbi.1000352
Xing, 2013, Taxonomic and functional metagenomic profiling of gastrointestinal tract microbiome of the farmed adult turbot (Scophthalmus maximus), FEMS Microbiol. Ecol., 86, 432, 10.1111/1574-6941.12174
Xu, 2010, Effects of dietary arachidonic acid on growth performance, survival, immune response and tissue fatty acid composition of juvenile Japanese seabass, Lateolabrax japonicus, Aquaculture, 307, 75, 10.1016/j.aquaculture.2010.07.001
Zhang, 2017, The influence of diet on the grass carp intestinal microbiota and bile acids, Aquac. Res., 48, 4934, 10.1111/are.13312
Zhou, 2014, Dietary supplementation with soybean oligosaccharides increases short-chain fatty acids but decreases protein-derived catabolites in the intestinal luminal content of weaned Huanjiang mini-piglets, Nutr. Res., 34, 780, 10.1016/j.nutres.2014.08.008
Zhou, 2017, Dietary effects of soybean products on gut microbiota and immunity of aquatic animals: a review, Aquac. Nutr., 1