Diagnostic tools to identify black aspergilli

Abarca, 2004, Taxonomy and significance of black aspergilli, Antonie Van Leeuwenhoek, 86, 33, 10.1023/B:ANTO.0000024907.85688.05

Al-Musallam, 1980

Atoui, 2007, Targeting a polyketide synthase gene for Aspergillus carbonarius quantification and ochratoxin A assessment in grapes using real-time PCR, International Journal of Food Microbiology, 115, 313, 10.1016/j.ijfoodmicro.2006.11.006

Bau, 2006, RFLP characterization of Aspergillus niger aggregate species from grapes from Europe and Israel, International Journal of Food Microbiology, 115, 313

Bufflier, 2007, Detection of Aspergillus carbonarius and other black aspergilli from grapes by DNA OLISA™ microarray, Food Additives and Contaminants, 24, 1138, 10.1080/02652030701579447

Bussink, 1991, Expression and sequence comparison of the Aspergillus niger and Aspergillus tubingensis genes encoding polygalacturonase II, Current Genetics, 19, 467, 10.1007/BF00312738

Cabañes, 2002, What is the source of ochratoxin A in wine?, International Journal of Food Microbiology, 79, 213, 10.1016/S0168-1605(02)00087-9

van Diepeningen, 2004, Efficient degradation of tannic acid by black Aspergillus species, Mycological Research, 108, 919, 10.1017/S0953756204000747

Dobson A, O'Callaghan J (2004). Detection of ochratoxin A producing fungi. Patent No. WO 2004/072224 A2.

Frisvad, 2004, Polyphasic taxonomy of Penicillium subgenus Penicillium. A guide to identification of food and air-borne terverticillate Penicillia and their mycotoxins, Studies in Mycology, 49, 1

Frisvad, 1987, Standardized high performance liquid chromatography of 182 mycotoxins and other fungal metabolites based on alkylphenone retention indices and UV-VIS spectra (diode array detection), Journal of Chromatography A, 404, 195, 10.1016/S0021-9673(01)86850-3

Frisvad, 1993, Liquid chromatography of mycotoxins, 54, 253

Frisvad, 2007, Secondary metabolite profiling, growth profiles and other tools for species recognition and important Aspergillus mycotoxins, Studies in Mycology, 59, 31, 10.3114/sim.2007.59.04

Fungaro, 2004, A molecular method for detection of Aspergillus carbonarius in coffee beans, Current Microbiology, 49, 123

Geiser, 2007, The current status of species recognition and identification in Aspergillus, Studies in Mycology, 59, 1, 10.3114/sim.2007.59.01

Gielkens, 1997, Arabinoxylan degradation by fungi: characterization of the arabinoxylan-arabinofuranohydrolase encoding genes from Aspergillus niger and Aspergillus tubingensis, Current Genetics, 31, 22, 10.1007/s002940050172

Gielkens, 1997, Arabinoxylan degradation by fungi: characterization of the arabinoxylan-arabinofuranohydrolase encoding genes from Aspergillus niger and Aspergillus tubingensis, Current Genetics, 31, 22, 10.1007/s002940050172

de Graaff, 1994, Regulation of the xylanase-encoding xlnA gene of Aspergillus tubingensis, Molecular Microbiology, 12, 479, 10.1111/j.1365-2958.1994.tb01036.x

Hamari, 1997, Molecular and phenotypic characterization of Aspergillus japonicus and Aspergillus aculeatus strains with special regard to their mitochondrial DNA polymorphisms, Antonie Van Leeuwenhoek, 72, 337, 10.1023/A:1000578913759

Hamari, 1999, Interpretation of variability of mitochondrial genomes in the species Aspergillus carbonarius, Antonie Van Leeuwenhoek, 75, 225, 10.1023/A:1001851104792

Haugland, 2004, Quantitative PCR analysis of selected Aspergillus, Penicillium and Paecilomyces Species, Systematic and Applied Microbiology, 27, 198, 10.1078/072320204322881826

Haugland RA, Vesper S (2002). Method of identifying and quantifying specific fungi and bacteria. US Patent No. 6,387,652.

Kevei, 1996, Molecular polymorphism and phenotypic variation in Aspergillus carbonarius, Antonie van Leeuwenhoek, 70, 59, 10.1007/BF00393570

Kusters-van Someren, 1990, Variation in pectinolytic enzymes in black aspergilli: a biochemical and genetic approach, 321

Kusters-van Someren, 1991, The use of RFLP analysis in classification of the black aspergilli: reinterpretation of Aspergillus niger aggregate, Current Genetics, 19, 21, 10.1007/BF00362083

Lebrihi A, Mathieu F, Borgida LP, Guyonvarch AM (2003). Method for the detection of ochratoxin A- or citrinin-producing fungi. European patent No. EP1329521.

Lund, 1995, Differentiating Penicillium species by detection of indole metabolites using a filter paper method, Letters in Applied Microbiology, 20, 228, 10.1111/j.1472-765X.1995.tb00434.x

Martinez-Culebras, 2007, An ITS-RFLP method to identify black Aspergillus isolates responsible for OTA contamination in grapes and wine, International Journal of Food Microbiology, 113, 147, 10.1016/j.ijfoodmicro.2006.06.023

Medina, 2005, Study of Spanish grape mycobiota and ochratoxin A production by Isolates of Aspergillus tubingensis and other members of Aspergillus section Nigri, Applied and Environmentral Microbiology, 71, 4696, 10.1128/AEM.71.8.4696-4702.2005

Megnegneau, 1993, Genetic variability and relatedness in the complex group of black aspergilli based on random amplification of polymorphic DNA, Current Genetics, 23, 323, 10.1007/BF00310893

Mosseray, 1934, Les Aspergillus de la section “Niger” Thom and Church, La Cellule, 43, 203

Mosseray, 1934, Sur la systématique des Aspergillus de la section “niger” Thom and Church, Annales de la Societé des Sciences, Bruxelles, Series II, 54, 72

Mulé, 2006, Development of a quantitative real-time PCR assay for the detection of Aspergillus carbonarius in grapes, International Journal of Food Microbiology, 111, S28, 10.1016/j.ijfoodmicro.2006.03.010

Murakami, 1976, A brief history of classification of the black aspergilli including the Kuro-koji molds. Taxonomic studies on Japanese industrial strains of the Aspergillus (Part 24), Journal of the Society of Brewing, Japan, 71, 952, 10.6013/jbrewsocjapan1915.71.952

Murakami, 1976, Origin of strain of the black aspergilli. Taxonomic studies on Japanese industrial strains of the Aspergillus (Part 25), Journal of the Society of Brewing, Japan, 71, 956, 10.6013/jbrewsocjapan1915.71.956

Murakami, 1979, Some experimental methods and cultural characteristics of the black aspergilli. Taxonomic studies on Japanese Industrial strains of the Aspergillus (Part 26), Journal of the Society of Brewing, Japan, 74, 323, 10.6013/jbrewsocjapan1915.74.323

Murakami, 1979, Clustering of strains belonging to the black aspergilli by multivariate analysis. Taxonomic studies on Japanese Industrial strains of the Aspergillus (Part 31), Journal of the Society of Brewing, Japan, 74, 842, 10.6013/jbrewsocjapan1915.74.842

Murakami, 1979, Classification system of the black aspergilli. Taxonomic studies on Japanese Industrial strains of the Aspergillus (Part 32), Journal of the Society of Brewing, Japan, 74, 849, 10.6013/jbrewsocjapan1915.74.849

Murakami, 1979, Summary and description of species of the black aspergilli. Taxonomic studies on Japanese Industrial strains of the Aspergillus (Part 33), Journal of the Society of Brewing, Japan, 74, 854, 10.6013/jbrewsocjapan1915.74.854

Murakami, 1979, Selection of representative strains of the black aspergilli. Taxonomic studies on Japanese Industrial strains of the Aspergillus (Part 29), Journal of the Society of Brewing, Japan, 74, 462, 10.6013/jbrewsocjapan1915.74.462

Murakami, 1979, Grading of morphological characters of the black aspergilli. Taxonomic studies on Japanese Industrial strains of the Aspergillus (Part 27), Journal of the Society of Brewing, Japan, 74, 328, 10.6013/jbrewsocjapan1915.74.328

Murakami, 1979, Grading of physiological characters of the black aspergilli. Taxonomic studies on Japanese Industrial strains of the Aspergillus (Part 28), Journal of the Society of Brewing, Japan, 74, 459, 10.6013/jbrewsocjapan1915.74.459

Murakami, 1979, Tables of mycological characters of the representative strains of the black aspergilli. Taxonomic studies on Japanese industrial strains of the Aspergillus (Part 30), Journal of the Society of Brewing, Japan, 74, 466, 10.6013/jbrewsocjapan1915.74.466

Nielsen, 2003, Fungal metabolite screening: database of 474 mycotoxins and fungal metabolites for dereplication by standardised liquid chromatography-UV-mass spectrometry methodology, Journal of Chromatography A, 1002, 111, 10.1016/S0021-9673(03)00490-4

Noonim, 2008, Two new species of Aspergillus section Nigri from Thai coffee beans, International Journal of Systematic and Evolutionary Microbiology, 10.1099/ijs.0.65694-0

Parenicova, 2001, Combined molecular and biochemical approach identifies Aspergillus japonicus and Aspergillus aculeatus as two species, Applied and Environmental Microbiology, 67, 521, 10.1128/AEM.67.2.521-527.2001

Parenicova, 2000, Molecular tools for the classification of black aspergilli, 413

Perrone, 2006, Ochratoxin A production and amplified fragment length polymorphism analysis of Aspergillus carbonarius, Aspergillus tubingensis, and Aspergillus niger strains isolated from grapes in Italy, Applied and Environmentral Microbiology, 72, 680, 10.1128/AEM.72.1.680-685.2006

Perrone, 2006, AFLP characterization of Southern Europe population of Aspergillus Section Nigri from grapes, International Journal of Food Microbiology, 111, S22, 10.1016/j.ijfoodmicro.2006.03.009

Perrone, 2004, PCR assay for identification of Aspergillus carbonarius and Aspergillus japonicus, European Journal of Plant Pathology, 110, 641, 10.1023/B:EJPP.0000032403.08921.49

Pollastro, 2006, A new semi-selective medium for the ochratoxigenic fungus Aspergillus carbonarius, Journal of Plant Pathology, 88, 107

Samson, 2004

Schmidt, 2004, Utilization of AFLP markers for PCR-based identification of Aspergillus carbonarius and indication of its presence in green coffee samples, Journal of Applied Microbiology, 97, 899, 10.1111/j.1365-2672.2004.02405.x

Schmidt, 2004, Utilization of AFLP markers for PCR-based identification of Aspergillus carbonarius and indication of its presence in green coffee samples, Journal of Applied Microbiology, 97, 899, 10.1111/j.1365-2672.2004.02405.x

Serra, 2006, Aspergillus ibericus: a new species of section Nigri isolated from grapes, Mycologia, 98, 295, 10.3852/mycologia.98.2.295

Smedsgaard, 1997, Micro-scale extraction procedure for standardized screening of fungal metabolite production in cultures, Journal of Chromatography A, 760, 264, 10.1016/S0021-9673(96)00803-5

Susca, 2007, Polymerase chain reaction (PCR) identification of Aspergillus niger and Aspergillus carbonarius based on the calmodulin gene, Food Additives and Contaminants, 24, 1154, 10.1080/02652030701546206

Susca, 2007, Rapid polymerase chain reaction (PCR)-single-stranded conformational polymorphism (SSCP) screening method for the identification of Aspergillus section Nigri species by the detection of calmodulin nucleotide variations, Food Additives and Contaminants, 24, 1148, 10.1080/02652030701551834

Swart, 1994, Physical karyotyping: genetic and taxonomic applications in aspergilli, 233

Varga, 1994, Mitochondrial DNA restriction fragment length polymorphisms in field isolates of the Aspergillus niger aggregate, Canadian Journal of Microbiology, 40, 612, 10.1139/m94-098

Varga, 1993, Restriction fragment length polymorphisms in the mitochondrial DNAs of the Aspergillus niger aggregate, Mycological Research, 97, 1207, 10.1016/S0953-7562(09)81286-0

Varga, 2000, Genotypic and phenotypic variability among black aspergilli, 397

Varga, 2007, Aspergillus brasiliensis sp. nov., a biseriate black Aspergillus species with world-wide distribution, International Journal of Systematic and Evolutionary Microbiology, 57, 1925, 10.1099/ijs.0.65021-0

de Vries, 2005, Aspergillus vadensis, a new species of the group of black aspergilli, Antonie van Leeuwenhoek, 87, 195, 10.1007/s10482-004-3194-y

Witiak SM, Samson RA, Varga J, Rokas A, Geiser DM (2007). Phylogenetic markers for the genus Aspergillus developed from complete genome sequences. 24th Fungal Genetics Conference, Asilomar, Abstract No. 130.

Yokoyama, 2001, Identification, classification and phylogeny of the Aspergillus section Nigri inferred from mitochondrial cytochrome b gene, FEMS Microbiology Letters, 200, 241, 10.1111/j.1574-6968.2001.tb10722.x

Zanzotto, 2006, Digestion of DNA regions to discriminate ochratoxigenic and non-ochratoxigenic strains in the Aspergillus niger aggregate, International Journal of Food Microbiology, 110, 155, 10.1016/j.ijfoodmicro.2006.04.003

Gonzalez-Salgado, 2005, Discrimination of Aspergillus niger and other Aspergillus species belonging to section Nigri by PCR assays, FEMS Microbiology Letters, 245, 353, 10.1016/j.femsle.2005.03.023

Kirimura, 1992, Physical mapping of the mitochondrial DNA from Aspergillus niger, FEMS Microbiology Letters, 90, 235, 10.1111/j.1574-6968.1992.tb05158.x