Developmental validation for Sanger sequencing of HV1 and HV2 in mitochondrial DNA
Tài liệu tham khảo
Brandhagen, 2020, Validation of NGS for mitochondrial DNA casework at the FBI laboratory, Forensic Sci. Int. Genet., 44, 10.1016/j.fsigen.2019.102151
Collins, 2004, Developmental validation of a single-tube amplification of the 13 CODIS STR loci, D2S1338, D19S433, and Amelogenin: the AmpFlSTR Identifiler PCR Amplification Kit, J. Forensic Sci., 49, 1265, 10.1520/JFS2002195
Yoshida, 2006, Validation of AmpFlSTR Identifiler PCR Amplification Kit in application to forensic evidential samples, Rep. Nat. Res. Inst. Police Sci., 57, 49
Wang, 2012, Developmental validation of the AmpFlSTR(R) Identifiler(R) plus PCR Amplification Kit: an established multiplex assay with improved performance, J. Forensic Sci., 57, 453, 10.1111/j.1556-4029.2011.01963.x
Inokuchi, 2012, Developmental validation of AmpFlSTR identifiler plus kit for forensic applications, Jpn. J. Forensic Sci. Tech., 17, 1, 10.3408/jafst.17.1
Ludeman, 2018, Developmental validation of GlobalFilerTM PCR amplification kit: a 6-dye multiplex assay designed for amplification of casework samples, Int. J. Legal Med., 132, 1555, 10.1007/s00414-018-1817-5
Fujii, 2016, Validation of STR typing method using the GlobalFIler kit for forensic purposes, Jpn. J. Forensic Sci. Tech., 21, 1, 10.3408/jafst.700
Chaitanya, 2014, Developmental validation of mitochondrial DNA genotyping assays for adept matrilineal inference of biogeographic ancestry at a continental level, Forensic Sci. Int. Genet., 11, 39, 10.1016/j.fsigen.2014.02.010
Melton, 2005, Forensic mitochondrial DNA analysis of 691 casework hairs, J. Forensic Sci., 50, 73, 10.1520/JFS2004230
Nelson, 2007, Forensic mitochondrial DNA analysis of 116 casework skeletal samples, J. Forensic Sci., 52, 557, 10.1111/j.1556-4029.2007.00407.x
2016
Amorim, 2019, Mitochondrial DNA in human identification: a review, PeerJ, 7, e7314, 10.7717/peerj.7314
Peck, 2018, Developmental validation of a Nextera XT mitogenome Illumina MiSeq sequencing method for high-quality samples, Forensic Sci. Int. Genet., 34, 25, 10.1016/j.fsigen.2018.01.004
Holland, 1999, Mitochondrial DNA sequence analysis - validation and use for forensic casework, Forensic Sci. Rev., 11, 21
Wilson, 1995, Validation of mitochondrial DNA sequencing for forensic casework analysis, Int. J. Legal Med., 108, 68, 10.1007/BF01369907
Mita, 2018, Study of multiplex PCR and high-speed PCR of mitochondrial DNA analysis, Jpn. J. Forensic Sci. Tech., 23, 103, 10.3408/jafst.742
Sekiguchi, 2003, MtDNA sequence analysis using capillary electrophoresis and its application to the analysis of MtDNA in hair, Jpn. J. Sci. Technol. Identif., 7, 123, 10.3408/jasti.7.123
Nakahara, 2008, Heteroplasmies detected in an amplified mitochondrial DNA control region from a small amount of template, J. Forensic Sci., 53, 306, 10.1111/j.1556-4029.2007.00655.x
Nakahara, 2007, Evaluations of DNA quantification methods for forensic biological samples, Jpn. J. Forensic Sci. Tech., 12, 13, 10.3408/jafst.12.13
Kitayama, 2013, Estimation of the detection rate in STR analysis by determining the DNA degradation ratio using quantitative PCR, Leg. Med. (Tokyo, Japan), 15, 1, 10.1016/j.legalmed.2012.07.003
Bendall, 1995, Length heteroplasmy in the first hypervariable segment of the human mtDNA control region, Am. J. Hum. Genet., 57, 248
Stewart, 2001, Length variation in HV2 of the human mitochondrial DNA control region, J. Forensic Sci., 46, 862, 10.1520/JFS15059J
Andrews, 1999, Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA, Nat. Genet., 23, 147, 10.1038/13779
QIAamp DNA Investigator Handbook, (January 2020).
Opel, 2010, A study of PCR inhibition mechanisms using real time PCR, J. Forensic Sci., 55, 25, 10.1111/j.1556-4029.2009.01245.x
Ono, 2015, Comparison of resistance to PCR inhibitors on Commercial DNA quantification kits, Jpn. J. Forensic Sci. Tech., 20, 69, 10.3408/jafst.686
Young, 1993, Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils, Appl. Environ. Microbiol., 59, 1972, 10.1128/aem.59.6.1972-1974.1993
Yoshii, 1993, Water-soluble Eumelanin as a PCR-inhibitor and a simple method for its removal, Jap. J. Leg. Med, 47, 323
Faber, 2013, PCR inhibitor removal using the NucleoSpin(r) DNA clean-up XS kit, Forensic Sci. Int. Genet., 7, 209, 10.1016/j.fsigen.2012.06.013
EZ1 DNA Investigator Handbook, (July 2014).
Desmyter, 2016, Hairy matters: MtDNA quantity and sequence variation along and among human head hairs, Forensic Sci. Int. Genet., 25, 1, 10.1016/j.fsigen.2016.07.012
Sekiguchi, 2004, Mitochondrial DNA heteroplasmy among hairs from single individuals, J. Forensic Sci., 49, 1, 10.1520/JFS2003216
Andreasson, 2006, Quantification of mtDNA mixtures in forensic evidence material using pyrosequencing, Int. J. Legal Med., 120, 383, 10.1007/s00414-005-0072-8
Kim, 2015, Analysis of mixtures using next generation sequencing of mitochondrial DNA hypervariable regions, Croat. Med. J., 56, 208, 10.3325/cmj.2015.56.208
Nucleotide BLAST, https://blast.ncbi.nlm.nih.gov/Blast.cgi.
Sekiguchi, 2008, Mitochondrial DNA population data of HV1 and HV2 sequences from Japanese individuals, Leg. Med. (Tokyo, Japan), 10, 284, 10.1016/j.legalmed.2008.02.002