Development of traditional Chinese medicine clinical data warehouse for medical knowledge discovery and decision support

Artificial Intelligence in Medicine - Tập 48 - Trang 139-152 - 2010
Xuezhong Zhou1, Shibo Chen2, Baoyan Liu3, Runsun Zhang4, Yinghui Wang4, Ping Li4, Yufeng Guo4, Hua Zhang5, Zhuye Gao5, Xiufeng Yan4
1School of Computer and Information Technology, Beijing Jiaotong University, Beijing 100044, China
2TCM Institute of Basic Clinic Medicine, China Academy of Chinese Medicine Sciences, Beijing 100700, China
3China Academy of Chinese Medicine Sciences, Beijing, 100700, China
4Guanganmen Hospital, China Academy of Chinese Medicine Sciences, Beijing 100053, China
5Beijing University of Chinese Medicine, Beijing 100029, China

Tài liệu tham khảo

Konkimalla, 2008, Evidence-based Chinese medicine for cancer therapy, J Ethnopharmacol, 116, 207, 10.1016/j.jep.2007.12.009 Rao, 1999, Use of complementary therapies for arthritis among patients of rheumatologists, Ann Intern Med, 131, 409, 10.7326/0003-4819-131-6-199909210-00003 Wang, 2008, Dissection of mechanisms of Chinese medicinal formula Realgar–Indigo naturalis as an effective treatment for promyelocytic leukemia, Proc Natl Acad Sci USA, 105, 4826, 10.1073/pnas.0712365105 Diener, 2006, Efficacy of acupuncture for the prophylaxis of migraine: a multicentre randomised controlled clinical trial, Lancet Neurol, 5, 310, 10.1016/S1474-4422(06)70382-9 Tsang, 2007, Establishing the efficacy of traditional Chinese medicine, Nat Clin Pract Rheumatol, 3, 60, 10.1038/ncprheum0406 Angell, 1998, Alternative medicine—the risks of untested and unregulated remedies, N Engl J Med, 339, 839, 10.1056/NEJM199809173391210 Wheeler, 2005, Database resources of the national center for biotechnology information, Nucleic Acids Res, 33, D39, 10.1093/nar/gki062 Liu, 2003, Conception and study in establishment of modern individualized diagnosis and treatment system in TCM, World Sci Technol-Mod TCM Mater Med, 5, 1 Liu, 2007, Design and practice of wet–dry approach in clinical research of TCM, World Sci Technol-Mod TCM Mater Med, 9, 85 Inmon, 2002 Silver, 2001, Case study: how to apply data mining techniques in a healthcare data warehouse, J Healthcare Inf Manage, 15, 155 Wisniewski, 2003, Development of a clinical data warehouse for hospital infection control, J Am Med Inform Assoc, 10, 455, 10.1197/jamia.M1299 Banek, 2006, Integrating different grain levels in a medical data warehouse federation, 185 Einbinder, 2002, Using a clinical data repository to estimate the frequency and costs of adverse drug events, J Am Med Inform Assoc, 9, s34, 10.1197/jamia.M1222 Allard, 2003, The clinical laboratory data warehouse. An overlooked diamond mine, Am J Clin Pathol, 817 Grant, 2006, Integrating feedback from a clinical data warehouse into practice organisation, Int J Med Inform, 75, 232, 10.1016/j.ijmedinf.2005.07.037 Rubin, 2008, A data warehouse for integrating radiologic and pathologic data, J Am Coll Radiol, 5, 210, 10.1016/j.jacr.2007.09.004 Lyman, 2008, The development of healthcare data warehouses to support data mining, Clin Lab Med, 28, 55, 10.1016/j.cll.2007.10.003 Pedersen, 1998, Research issues in clinical data warehousing, 43 Sahama, 2007, A data warehouse architecture for clinical data warehousing, 227 Los, 2004, OpenSDE: row modeling applied to generic structured data entry, J Am Med Inform Assoc, 11, 162, 10.1197/jamia.M1375 Li, 2005, Traditional Chinese medicine electronic medical record system and the reorganization of TCM theoretical knowledge (in Chinese), Chin J Inform TCM, 12 Guo, 2007, Ontology and standardization of the TCM terms, Chin Arc TCM, 25, 1368 Oracle data miner. http://www.oracle.com/technology/products/bi/odm/odminer.html (Accessed: July 8, 2009). Witten, 2005 BusinessObjects. http://www.sap.com/solutions/sapbusinessobjects/index.epx (Accessed: 8 July 2009). Zhou X. The research on TCM clinical data warehousing and clinical data mining methods. Postdoctoral Report, China academy of Chinese medical sciences, Beijing, 2007.3 (in Chinese). The STRIDE clinical data warehouse. http://clinicalinformatics.stanford.edu/STRIDE/cdw.html (Accessed: 8 July 2009). HL7 reference information model. http://www.hl7.org/Library/data-model/RIM/modelpage_mem.htm (Accessed: 8 July 2009). Lindberg, 1993, The unified medical language system, Meth Inform Med, 32, 281, 10.1055/s-0038-1634945 Augusto, 2005, Temporal reasoning for decision support in medicine, Artif Intell Med, 33, 1, 10.1016/j.artmed.2004.07.006 Shahar, 1998, Timing is everything. Time-oriented clinical information systems, West J Med, 168, 105 Zhou, 2004, Ontology development for unified traditional Chinese medical language system, Artif Intell Med, 32, 15, 10.1016/j.artmed.2004.01.014 Zhou, 2008, Extraction of hierarchical core structures from traditional Chinese medicine herb combination network, 262 Brazhnik, 2007, Anatomy of data integration, J Biomed Inform, 40, 252, 10.1016/j.jbi.2006.09.001 Cios, 2002, Uniqueness of medical data mining, Artif Intell Med, 26, 1, 10.1016/S0933-3657(02)00049-0 Lin, 2006, Data preparation framework for preprocessing clinical data in data mining, AMIA Annu Symp Proc, 489 Deshpande, 2002, Metadata-driven ad hoc query of patient data meeting the needs of clinical studies, J Am Med Inform Assoc, 9, 369, 10.1197/jamia.M1034 Osheroff, 2007, A roadmap for national action on clinical decision support, J Am Med Inform Assoc, 14, 141, 10.1197/jamia.M2334 Roddick, 2003, Exploratory medical knowledge discovery: experiences and issues, ACM SIGKDD Explor Newslett, 5, 94, 10.1145/959242.959243 McSherry, 1999, Dynamic and static approaches to clinical data mining, Artif Intell Med, 16, 97, 10.1016/S0933-3657(98)00066-9 Harrison, 2008, Introduction to the mining of clinical data, Clin Lab Med, 28, 1, 10.1016/j.cll.2007.10.001 Bellazzi, 2008, Predictive data mining in clinical medicine: current issues and guidelines, Int J Med Inform, 77, 81, 10.1016/j.ijmedinf.2006.11.006 Tan, 2003, Evolutionary computing for knowledge discovery in medical diagnosis, Artif Intell Med, 27, 129, 10.1016/S0933-3657(03)00002-2 Kurgan, 2001, Knowledge discovery approach to automated cardiac SPECT diagnosis, Artif Intell Med, 23, 149, 10.1016/S0933-3657(01)00082-3 Richards, 2001, Data mining for indicators of early mortality in a database of clinical records, Artif Intell Med, 22, 215, 10.1016/S0933-3657(00)00110-X Prather, 1997, Medical data mining: knowledge discovery in a clinical data warehouse, Proc AMIA Annu Fall Symp, 101 Breaulta, 2002, Data mining a diabetic data warehouse, Artif Intell Med, 26, 37, 10.1016/S0933-3657(02)00051-9 Hirano, 2004, Comparison of clustering methods for clinical databases, Inform Sci, 159, 155, 10.1016/j.ins.2003.03.011 Mullinsa, 2006, Data mining and clinical data repositories: insights from a 667,000 patient data set, Comp Biol Med, 36, 1351, 10.1016/j.compbiomed.2005.08.003 Cho, 2008, Application of irregular and unbalanced data to predict diabetic nephropathy using visualization and feature selection methods, Artif Intell Med, 42, 37, 10.1016/j.artmed.2007.09.005 Feng, 2006, Knowledge discovery in traditional Chinese medicine: state of the art and perspectives, Artif Intell Med, 38, 219, 10.1016/j.artmed.2006.07.005 Lukman, 2007, Computational methods for traditional Chinese medicine: a survey, Comput Methods Prog Biomed, 88, 283, 10.1016/j.cmpb.2007.09.008 Zha, 2007, Predictive role of diagnostic information in treatment efficacy of rheumatoid arthritis based on neural network model analysis, Zhong Xi Yi Jie He Xue Bao, 5, 32, 10.3736/jcim20070107 Chen, 2008, Global comparison study of five data mining methods in predicting syndrome in coronary heart disease, J Comput Inform Syst, 4, 219 Tang, 2008, Exploration of TCM masters knowledge mining, J Syst Sci Comp, 21, 34, 10.1007/s11424-008-9064-3 Zhang, 2008, Latent tree models and diagnosis in traditional Chinese medicine, Artif Intell Med, 42, 229, 10.1016/j.artmed.2007.10.004 Zhang, 2008, Statistical validation of traditional Chinese medicine theories, J Altern Complement Med, 14, 583, 10.1089/acm.2007.7019 Zhang, 2007, Study on the idea of clinical acupuncture point combination of TCM physician Tian, J Clin Acup Mox, 23, 36 Ni, 2006, Study of relationship between formula (herbs) and syndrome about type 2 diabetes mellitus affiliated metabolic syndrome based on the scale-free network, Chin J Inform TCM, 13, 19 Jian, 2007, Study on treatment law of type 2 diabetes based on structural electronic medical record system, J Shandong Univ TCM, 31, 195 Gao, 2007, The cluster analysis on syndrome type of TCM in patients with acute myocardial infarction, J Emerg TCM, 16, 432 Zhang R. Clinical research on the syndrome structure and syndrome hierarchical differentiation of disharmony of liver and spleen syndrome. PhD thesis, Guanganmen hospital, China academy of Chinese medical sciences. 2008 (in Chinese). Freund, 1999, The alternating decision tree learning algorithm, 124