Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

E Paux, 2010, Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat., Plant Biotechnology Journal, 8, 196, 10.1111/j.1467-7652.2009.00477.x

E Akhunov, 2009, Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay., TAG Theoretical and Applied Genetics, 119, 507, 10.1007/s00122-009-1059-5

E Paux, 2008, A Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B., Science, 322, 101, 10.1126/science.1161847

K Arumuganathan, 1991, Nuclear DNA content of some important plant species., Plant Mol Biol Report, 9, 208, 10.1007/BF02672069

JW Davey, 2011, Genome-wide genetic marker discovery and genotyping using next-generation sequencing., Nat Rev Genet, 12, 499, 10.1038/nrg3012

S Deschamps, 2010, Rapid genome-wide single nucleotide polymorphism discovery in soybean and rice via deep resequencing of reduced representation libraries with the Illumina genome analyzer., The Plant Genome, 3, 53, 10.3835/plantgenome2009.09.0026

MA Gore, 2009, A First-Generation haplotype map of maize., Science, 326, 1115, 10.1126/science.1177837

D Hyten, 2010, High-throughput SNP discovery and assay development in common bean., BMC Genomics, 11, 475, 10.1186/1471-2164-11-475

D Hyten, 2010, High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence., BMC Genomics, 11, 38, 10.1186/1471-2164-11-38

J Nelson, 2011, Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum., BMC Genomics, 12, 352, 10.1186/1471-2164-12-352

F You, 2011, Annotation-based genome-wide SNP discovery in the large and complex <italic>Aegilops tauschii</italic> genome using next-generation sequencing without a reference genome sequence., BMC Genomics, 12, 59, 10.1186/1471-2164-12-59

S Atwell, 2010, Genome-wide association study of 107 phenotypes in <italic>Arabidopsis thaliana</italic> inbred lines., Nature, 465, 627, 10.1038/nature08800

J Cockram, 2010, Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome., Proc Natl Acad Sci USA, 107, 21611, 10.1073/pnas.1010179107

THE Meuwissen, 2001, Prediction of total genetic value using genome-wide dense marker maps., Genetics, 157, 1819, 10.1093/genetics/157.4.1819

J-L Jannink, 2010, Genomic selection in plant breeding: from theory to practice., Briefings in Functional Genomics, 9, 166, 10.1093/bfgp/elq001

N Baird, 2008, Rapid SNP discovery and genetic mapping using sequenced RAD markers., PloS One, 3, e3376, 10.1371/journal.pone.0003376

MR Miller, 2007, Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers., Genome Res, 17, 240, 10.1101/gr.5681207

M Miller, 2007, RAD marker microarrays enable rapid mapping of zebrafish mutations., Genome Biology, 8, R105, 10.1186/gb-2007-8-6-r105

RJ Elshire, 2011, A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species., PloS One, 6, e19379, 10.1371/journal.pone.0019379

J van Oeveren, 2011, Sequence-based physical mapping of complex genomes by whole genome profiling., Genome Res, 21, 618, 10.1101/gr.112094.110

Y Chutimanitsakun, 2011, Construction and application for QTL analysis of a restriction site associated DNA (RAD) linkage map in barley., BMC Genomics, 12, 4, 10.1186/1471-2164-12-4

P Wenzl, 2004, Diversity Arrays Technology (DArT) for whole-genome profiling of barley., Proc Natl Acad Sci U S A, 101, 9915, 10.1073/pnas.0401076101

JM Costa, 2001, Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population., TAG Theoretical and Applied Genetics, 103, 415, 10.1007/s001220100622

P Szűcs, 2009, An integrated resource for barley linkage map and malting quality QTL alignment., Plant Genome, 2, 134, 10.3835/plantgenome2008.01.0005

ME Sorrells, 2011, Reconstruction of the Synthetic W7984×Opata M85 wheat reference population., Genome, 54, 875, 10.1139/g11-054

T Close, 2009, Development and implementation of high-throughput SNP genotyping in barley., BMC Genomics, 10, 582, 10.1186/1471-2164-10-582

H Iwata, 2006, AntMap: Constructing genetic linkage maps using an ant colony optimization algorithm., Breed Sci, 56, 371, 10.1270/jsbbs.56.371

BS Gill, 1991, Standard karyotype and nomenclature system for description of chromosome bands and structural aberrations in wheat (<italic>Triticum aestivum</italic>)., Genome, 34, 830, 10.1139/g91-128

R Wolfe, 1991, Multiple dominant and recessive genetic marker stocks in spring barley., Barley Genetics Newsletter, 20, 117

RI Wolfe, 1972, A multiple stock in Brandon, Canada., Barley Genetics Newsletter, 2, 170

JJ Doyle, 1987, A rapid DNA isolation procedure for small quantities from fresh leaf tissue., Phyotochemical Bulletin, 19, 11