Development and validation of a modular, extensible docking program: DOCK 5
Tóm tắt
Từ khóa
Tài liệu tham khảo
Posner BA (2005) Curr Opin Drug Discovery Dev 8:487
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, Mainz DT, Repasky MP, Knoll EH, Shelley M, Perry JK, Shaw DE, Francis P, Shenkin PS (2004) J Med Chem 47:1739
Halgren TA, Murphy RB, Friesner RA, Beard HS, Frye LL, Pollard WT, Banks JL (2004) J Med Chem 47:1750
Lischner R (2003) C++ in a nutshell. 1st edn. O’Reilly Media, Inc, Sebastopol, CA
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) Nucleic Acids Res 28:235
SYBYL, Tripos, Inc., St. Louis, Missouri, 63144
Case DA, Darden TA, Cheatham III, TE, Simmerling CL, Wang J, Duke RE, Luo R, Merz KM, Wang B, Pearlman DA, Crowley M, Brozell S, Tsui V, Gohlke H, Mongan J, Hornak V, Cui G, Beroza P, Schafmeister C, Caldwell JW, Ross WS, Kollman PA (2004) AMBER 8, University of California, San Francisco
Oprea TI, Davis AM, Teague SJ, Leeson PD (2001) J Chem Inf Model 41:1308
Brooijmans N (2003) Theoretical studies of molecular recognition, Graduate Department of Chemistry and Chemical Biology, University of California, San Francisco, San Francisco, CA
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995) J Am Chem Soc 117:5179
DesJarlais RL, Sheridan RP, Seibel GL, Dixon JS, Kuntz ID, Venkataraghavan R (1988) J Med Chem 31:722
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) J Comput Chem 25:1605
The results for the FlexX test set are available at http://www.biosolveit.de/FlexX/
The results for the GOLD test set are available at http://www.ccdc.cam.ac.uk/products/life_sciences/validate/gold_validation/value.html
Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Arthurs S, Colson AB, Freer ST, Larson V, Luty BA, Marrone T, Rose PW (2000) J Comput-Aided Mol Des 14:731