Detection of microsatellite instability during somatic embryogenesis of oak (Quercus robur L.)

Arnholdt-Schmitt B (1995) Physiological aspects of genome variability in tissue culture. II. Growth phase-dependent quantitative variability of repetitive BstNI fragments of primary cultures of Daucus carota L. Theor Appl Genet 91:816–823 Barreneche T, Bodenes C, Lexer C, Trontin JF, Fluch S, Streiff C, Plomion C, Roussel G, Steinkellner H, Burg K, Favre JM, Glössl J, Kremer A (1998) A genetic linkage map of Quercus robur L. (pedunculate oak) based on RAPD, SCAR, microsatellite, minisatellite, isozyme and 5S rDNA markers. Theor Appl Genet 97:1090–1103 Besendorfer V, Zoldos V, Peskan T, Krsnik-Rasol M, Littvay T, Papes D (1996) Identification of potential cytogenetical and biochemical markers in bioindication of common oak forests. Phyton 36:139–146 Bogani P, Simoni A, Lio P, Germinarlo A, Buiatti M (2001) Molecular variation in plant cell populations evolving in vitro in different physiological contexts. Genome 44:549–558 Burg K, Hristoforoglu K, Fluch S, Hohl K, Burg A, Schmidt J (1999) Analysis of the fidelity of DNA replication in embryogenic cultures of Norway spruce. In: Espinel S, Ritter E (eds) Proc Applic Biotechnol For Genet. Biofor 99, Vitoria-Gasteiz, pp 231–235 Cassells AC, Curry RF (2001) Oxidative stress and physiological, epigenetic and genetic variability in plant tissue culture: implications for micropropagators and genetic engineers. Plant Cell Tissue Organ Cult 64:145–157 DeVerno LL, Charest PJ, Bonen L (1994) Mitochondrial DNA variation in somatic embryogenic cultures of Larix. Theor Appl Genet 88:727–732 DeVerno LL, Park YS, Bonga JM, Barret JD (1999) Somaclonal variation in cryopreserved embryogenic clones of white spruce (Picea glauca (Moench) Voss.). Plant Cell Rep 18:948–953 Dow BD, Ashley MV, Howe HF (1995) Characterization of highly variable (GA/CT)n microsatellites in the bur oak, Quercus macrocarpa. Theor Appl Genet 1:137–141 Endemann M, Wilhelm E (1999) Factors influencing the induction and viability of somatic embryos of Quercus robur L. Biol Plant 42:499–504 Etienne H, Bertrand B (2001) Trueness-to type and agronomic characteristics of Coffea arabica trees micropropagated by the embryogenic cell suspension technique. Tree Physiol 21:1031–1038 Fourré JL, Berger P, Niquet L, André P (1997) Somatic embryogenesis and somaclonal variation in Norway spruce: morphogenetic, cytogenetic and molecular approaches. Theor Appl Genet 94:159–169 Gallego FJ, Martinez I, Celestino J, Toribio M (1997) Testing somaclonal variation using RAPDs in Quercus suber L. somatic embryos. Int J Plant Sci 158:563–567 Hashimi G, Huettel R, Meyer R, Krusberg L, Hammerschlag F (1997) RAPD analysis of somaclonal variants derived from embryo callus cultures of peach. Plant Cell Rep 16:624–627 Hirochika H (1993) Activation of tobacco retrotransposons during tissue culture. EMBO J 12:2521–2528 Hirochika H, Sugimoto K, Otsuki Y, Tsugawa H, Kanda M (1996) Retrotransposons of rice involved in mutations induced by tissue culture. Proc Natl Acad Sci USA 93:7783–7788 Hornero J, Martinez I, Celestino C, Gallego FJ, Torres V, Toribio M (2001) Early checking of genetic stability of cork oak somatic embryos by AFLP analysis. Int J Plant Sci 162:827–833 Isabel N, Boivin R, Lefasseur C, Charest PM, Bousquet J, Tremblay FM (1996) Occurrence of somaclonal variation among somatic embryo-derived white spruces (Picea glauca, Pinaceae). Am J Bot 83:1121–1130 Jackson AL, Chen R, Loeb LA (1998) Induction of microsatellite instability by oxidative DNA damage. Proc Natl Acad Sci USA 95:12468–12473 Jain SM, Brar DS, Ahloowalia B (1998) Somaclonal variation and induced mutation in crop improvement. Kluwer, Dordrecht Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111–1115 Larkin PJ, Scowcroft WR (1981) Somaclonal variation—a novel source of variability from cell cultures for plant improvement. Theor Appl Genet 60:167–214 Leroy XJ, Leon K, Hily JM, Chaumail P, Benchard M (2001) Detection of in vitro culture-induced instability through inter-simple sequence repeat analysis. Theor Appl Genet 102:885–891 Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203–221 Lexer C, Heinze B, Gerber S, Macalka-Kampfer S, Steinkellner H, Ziegenhagen B, Kremer A, Glössl J (2001) Microsatellite analysis of small anonymous seedlot samples from pedunculate oak (Quercus robur): a promising approach to monitor the number of different seed parents and pollen donors. In: Müller-Starck G, Schubert R (eds) Genetic response of forest systems to changing environmental conditions. Forest science, vol 70. Kluwer, Dordrecht, pp 239–250 Linacero R, Freitas Alves A, Vazquez AM (2000) Hot spots of DNA instability revealed through the study of somaclonal variation in rye. Theor Appl Genet 100:506–511 Naujoks G, Hertel H, Ewald D (1995) Characterization and propagation of an adult triploid pedunculate oak (Quercus robur L.). Silvae Genet 44:282–286 Palombi MA, Damiano C (2002) Comparison between RAPD and SSR molecular markers in detecting genetic variation in kiwifruit (Actinidia deliciosa A. Chev). Plant Cell Rep 20:1061–1066 Powell W, Gordon C, Machray J, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1:215–222 Prewein C, Vagner M, Wilhelm E (2004) Changes in water status and proline and abscisic acid concentrations in developing somatic embryos of pedunculate oak (Quercus robur) during maturation and germination. Tree Physiol 24:1251–1257 Rahmann MH, Rajora OP (2001) Microsatellite DNA somaclonal variation in micropropagated trembling aspen (Populus tremuloides). Plant Cell Rep 20:531–536 Rani V, Raina SN (2000) Genetic fidelity of organized meristem-derived micropropagated plants: a critical reappraisal. In Vitro Cell Dev Biol Plant 36:319–330 Sanchez MC, Martinez MT, Valladares S, Vieitez AM (2003) Maturation and germination of oak somatic embryos originated from stem explants: RAPD markers for genetic analysis of regenerants. J Plant Physiol 160:699–707 Steinkellner H, Fluch S, Turetschek E, Lexer C, Streiff R, Kremer A, Burg K, Glössl J (1997) Identification and characterization of (GA/CT)n—microsatellite loci from Quercus petraea. Plant Mol Biol 33:1093–1096 Sunderlikova V, Wilhelm E (2002) High accumulation of legumin and lea-like mRNAs during maturation is associated with increased conversion frequency of somatic embryos from pedunculate oak (Quercus robur L.). Protoplasma 220:97–103 Teasdale R (1992) Formulation of plant culture media and applications therefore. International Publ No.: Wo 92/07460. Forbio PTY, Queensland. Patent No. Europe: 92902531.0 Thakur RC, Gota S, Ishii K, Jain SM (1999) Monitoring genetic stability in Quercus serrata Thunb. somatic embryogenesis using RAPD markers, J For Res 4:157–160 Vendrame WA, Kochert G, Wetzstein HY (1999) AFLP analysis of variation in pecan somatic embryos. Plant Cell Rep 18:853–857 Wilhelm E (2000) Somatic embryogenesis in oak (Quercus spp.). In Vitro Cell Dev Biol Plant 36:349–357 Zhu Y, Strassmann E, Queller DC (2000) Insertions, substitutions, and the origin of microsatellites. Genet Res 76:227–236