Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex)

Heredity - Tập 102 Số 5 - Trang 442-452 - 2009
Concetta Burgarella1, Zaida Lorenzo1, Roula Jabbour‐Zahab2, R. Lumaret2, Erwan Guichoux3, Rémy J. Petit3, Álvaro Soto4, Luis Gil4
1G I Genética y Fisiología Forestal, Universidad Politécnica de Madrid, Madrid, Spain
2Département de Biologie des populations, Unité Mixte de Recherche (UPR) 5175, Centre d’Ecologie Fonctionnelle et Evolutive, CNRS, Montpellier Cedex, France
3INRA, UMR1202, BIOGECO, Cestas, France
4Unidad Mixta de Genética y Ecofisiología Forestal INIA-UPM, Universidad Politécnica de Madrid, Madrid, Spain

Tóm tắt

Từ khóa


Tài liệu tham khảo

Amaral Franco J (1990). Quercus L. In: Castroviejo S (ed). Flora Ibérica. Plantas vasculares de la Península Ibérica e Islas Baleares. Real Jardín Botánico, CSIC: Madrid. vol. II.

Anderson EC, Thompson EA (2002). A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160: 1217–1229.

Barilani M, Sfougaris A, Giannakopoulos A, Mucci N, Tabarroni C, Randi E (2007). Detecting introgressive hybridisation in rock partridge populations (Alectoris graeca) in Greece through Bayesian admixture analyses of multilocus genotypes. Conserv Genet 8: 343–354.

Belahbib N, Pemonge MH, Ouassou A, Sbay H, Kremer A, Petit RJ (2001). Frequent cytoplasmic exchanges between oak species that are not closely related: Quercus suber and Q. ilex in Morocco. Mol Ecol 10: 2003–2012.

Bellarosa R, Simeone MC, Papini A, Schirone B (2005). Utility of ITS sequence data for phylogenetic reconstruction of Italian Quercus spp. Mol Phylogenet Evol 34: 355–370.

Boavida LC, Silva JP, Feijó JA (2001). Sexual reproduction in the cork oak (Quercus suber L.). II. Crossing intra- and interspecific barriers. Sex Plant Reprod 14: 143–152.

Boecklen WJ, Howard DJ (1997). Genetic analysis of hybrid zones: numbers of markers and power of resolution. Ecology 78: 2611–2616.

Burgarella C, Navascués M, Soto A, Lora González A, Fici S (2007). Narrow genetic base in forest restoration with holm oak (Quercus ilex L.) in Sicily. Ann Forest Sci 64: 757–763.

Burgess KS, Morgan M, DeVerno LL, Husband CB (2005). Asymmetrical introgression between two Morus species (M. alba, M. rubra) that differ in abundance. Mol Ecol 14: 3471–3483.

Currat M, Ruedi M, Petit R, Excoffier L (2008). The hidden side of invasions: massive introgression by local genes. Evolution 62: 1908–1920.

Curtu AL, Gailing O, Finkedley R (2007). Evidence for hybridization and introgression within a species-rich oak (Quercus spp.) community. BMC Evol Biol 7: 218.

Dodd RS, Afzal-Rafii Z (2004). Selection and dispersal in a multispecies oak hybrid zone. Evolution 58: 261–269.

Dow B, Ashley M, Howe H (1995). Characterization of highly variable (GA/CT)n microsatellites in the bur oak, Quercus macrocarpa. Theor Appl Genet 91: 137–141.

Duminil J, Caron H, Scotti I, Cazal S-O, Petit RJ (2006). Blind population genetics survey of tropical rainforest trees. Mol Ecol 15: 3505–3513.

Dumolin-Lapègue S, Kremer A, Petit RJ (1999). Are chloroplast and mitochondrial DNA variation species independent in oaks? Evolution 53: 1406–1413.

Dumolin S, Demesure B, Petit R (1995). Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theor Appl Genet 91: 1253–1256.

Elena-Rosselló JA, Lumaret R, Cabrera E, Michaud H (1992). Evidence for hybridization between sympatric holm-oak and cork oak in Spain based on diagnostic enzyme markers. Vegetatio 99–100: 115–118.

Ellstrand NC, Whitkus R, Rieseberg LH (1996). Distribution of spontaneous plant hybrids. Proc Natl Acad Sci 93: 5090–5093.

Falush D, Stephens M, Pritchard JK (2003). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567–1587.

Fernández-Manjarrés JF, Gerard PR, Dufour J, Raquin C, Frascaria-Lacoste N (2006). Differential patterns of morphological and molecular hybridization between Fraxinus excelsior L. and Fraxinus angustifolia Vahl (Oleaceae) in eastern and western France. Mol Ecol 15: 3245–3257.

González-Rodríguez A, Arias DM, Valencia S, Oyama K (2004). Morphological and RAPD analysis of hybridization between Quercus affinis and Q. laurina (Fagaceae), two Mexican red oaks. Am J Bot 91: 401–409.

Goudet J (2001). FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available at http://www2.unil.ch/popgen/softwares/fstat.htm .

Heuertz M, Carnevale S, Fineschi S, Sebastiani F, Hausman JF, Paule L et al. (2006). Chloroplast DNA phylogeography of European ashes, Fraxinus sp. (Oleaceae): roles of hybridization and life history traits. Mol Ecol 15: 2131–2140.

Hood GM (2005). PopTools version 2.6.6. Available at http://www.cse.csiro.au/poptools .

Howard DJ, Preszler RW, Williams JH, Fenchel S, Boecklen WJ (1997). How discrete are oak species? Insights form a hybrid zone between Quercus grisea and Quercus gambelii. Evolution 51: 747–755.

Jensen RJ, Hokanson SC, Isebrands JG, Hancock JF (1993). Morphometric variation in oaks of the Apostle Islands in Wisconsin: evidence of hybridization between Quercus rubra and Q. ellipsoidalis. Am J Bot 80: 1358–1366.

Jiménez MP, Lopez de Heredia U, Collada C, Lorenzo Z, Gil L (2004). High variability of chloroplast DNA in three Mediterranean evergreen oaks indicates complex evolutionary history. Heredity 93: 510–515.

Kampfer S, Lexer C, Glössl J, Steinkellner H (1998). Characterization of (GA)n microsatellite loci from Quercus robur. Hereditas 129: 183–186.

Kothera L, Ward SM, Carney SE (2007). Assessing the threat from hybridization to the rare endemic Physaria bellii Mulligan (Brassicaceae). Biol Conserv 140: 110–118.

Lexer C, Fay MF, Joseph JA, Nica MS, Heinze B (2005). Barrier to gene flow between two ecologically divergent Populus species, P. alba (white poplar) and P. tremula (European aspen): the role of ecology and life history in gene introgression. Mol Ecol 14: 1045–1057.

Lexer C, Kremer A, Petit RJ (2006). Shared alleles in sympatric oaks: recurrent gene flow is a more parsimonious explanation than ancestral polymorphism. Mol Ecol 15: 2007–2012.

López de Heredia U, Carrión JS, Jiménez P, Collada C, Gil L (2007a). Molecular and palaeobotanical evidence for multiple glacial refugia for evergreen oaks on the Iberian Peninsula. J Biogeogr 34: 1505–1517.

López de Heredia U, Jiménez P, Collada C, Simeone MC, Bellarosa R, Schirone B et al. (2007b). Multi-marker phylogeny of three evergreen oaks reveals vicariant patterns in the Western Mediterranean. Taxon 56: 1199–1209.

López de Heredia U, Jiménez P, Díaz-Fernández PM, Gil L (2005). The Balearic Islands: a reservoir of cpDNA genetic variation for evergreen oaks. J Biogeogr 32: 939–949.

Lumaret R, Mir H, Michaud H, Raynal V (2002). Phylogeographical variation of chloroplast DNA in holm oak (Quercus ilex L.). Mol Ecol 11: 2327–2336.

Lumaret R, Tryphon-Dionnet M, Michaud H, Sanuy A, Ipotesi E, Born C et al. (2005). Phylogeographical variation of chloroplast DNA in cork oak (Quercus suber). Ann Bot 96: 853–861.

Mallet J (2005). Hybridization as an invasion of the genome. Trends Ecol Evol 20: 229–237.

Manos PS, Doyle JJ, Nixon KC (1999). Phylogeny, biogeography, and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae). Mol Phylogenet Evol 12: 333–349.

Manos PS, Zhou Z, Cannon CH (2001). Systematics of Fagaceae: phylogenetic tests of reproductive trait evolution. Int J Plant Sci 162: 1361–1379.

Martín Vicente Á, Fernández Alés R (2006). Long term persistence of dehesas. Evidences from history. Agroforest Syst 67: 19–28.

Muir G, Schlötterer C (2005). Evidence for shared ancestral polymorphism rather than recurrent gene flow at microsatellite loci differentiating two hybridizing oaks (Quercus spp.). Mol Ecol 14: 549–561.

Nason JD (1992). Patterns of hybridization and introgression in populations of oaks, manzanitas, and irises. Am J Bot 79: 101–111.

Nielsen EE, Bach LA, Kotlick P (2006). HYBRIDLAB (version 1.0): a program for generating simulated hybrids from population samples. Mol Ecol Notes 6: 971–973.

Oliveira P, Custódio AC, Branco C, Reforço I, Rodrigues F, Varela MC et al. (2003). Hybrids between cork oak and holm oak: isoenzyme analysis. Forest Genet 10: 283–297.

Oliveira R, Godinho R, Randi E, Ferrand N, Alves P (2007). Molecular analysis of hybridisation between wild and domestic cats (Felis silvestris) in Portugal: implications for conservation. Conserv Genet 9: 1–11.

Olrik DC, Kjaer ED (2007). The reproductive success of a Quercus petraea x Q. robur F1-hybrid in back-crossing situations. Ann Forest Sci 64: 37–45.

Palmé AE, Su Q, Palsson S, Lascoux M (2004). Extensive sharing of chloroplast haplotypes among European birches indicates hybridization among Betula pendula, B. pubescens and B. nana. Mol Ecol 13: 167–178.

Petit RJ, Bialozyt R, Garnier-Gere P, Hampe A (2004). Ecology and genetics of tree invasions: from recent introductions to Quaternary migrations. Forest Ecol Manag 197: 117–137.

Petit RJ, Pineau E, Demesure B, Bacilieri R, Ducousso A, Kremer A (1997). Chloroplast DNA footprints of postglacial recolonization by oaks. Proc Natl Acad Sci 94: 9996–10001.

Plieninger T, Pulido FJ, Konold W (2003). Effects of land-use history on size structure of holm oak stands in Spanish dehesas: implications for conservation and restoration. Environ Conserv 30: 61–70.

Potts B, Reid JB (1988). Hybridization as a dispersal mechanism. Evolution 42: 1245–1255.

Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945–959.

Rieseberg LH, Carney SE (1998). Plant hybridization. New Phytol 140: 599–624.

Rieseberg LH, Raymond O, Rosenthal DM, Lai Z, Livingstone K, Nakazato T et al. (2003). Major ecological transitions in wild sunflowers facilitated by hybridization. Science 301: 1211–1216.

Rushton BS (1993). Natural hybridization within the genus Quercus L. Ann Sci Forest 50 (Suppl 1): 73–90.

Seehausen O (2004). Hybridization and adaptive radiation. Trends Ecol Evol 19: 198–207.

Shriver MD, Smith MW, Jin L, Marcini A, Akey JM, Deka R et al. (1997). Ethnic-affiliation estimation by use of population-specific DNA markers. Am J Hum Gen 60: 957–964.

Soto A, Lorenzo Z, Gil L (2003). Nuclear microsatellites markers for the identification of Quercus ilex L. and Quercus suber L. hybrids. Silvae Genet 52: 63–66.

Soto A, Lorenzo Z, Gil L (2007). Differences in fine-scale genetic structure and dispersal in Quercus ilex L. and Q. suber L.: consequences for regeneration of Mediterranean open woods. Heredity 99: 601–607.

Staudt M, Mir C, Joffre R, Rambal S, Bonin A, Landais D et al. (2004). Isoprenoid emissions of Quercus spp. (Q.suber and Q.ilex) in mixed stands contrasting in interspecific genetic introgression. New Phytol 163: 573–584.

Steinkellner H, Fluch S, Turetschek E, Lexer C, Streiff R, Kremer A et al. (1997). Identification and characterization of (GA/CT)n—microsatellite loci from Quercus petraea. Plant Mol Biol 3: 1093–1096.

Toumi L, Lumaret R (1998). Allozyme variation in cork oak (Quercus suber L.): the role of phylogeography and genetic introgression by other Mediterranean oak species and human activities. Theor Appl Genet 97: 647–656.

Toumi L, Lumaret R (2001). Allozyme characterization of four Mediterranean evergreen oak species. Biochem Syst Ecol 29: 799–817.

Tovar-Sanchez E, Oyama K (2004). Natural hybridization and hybrid zones between Quercus crassifolia and Quercus crassipes (Fagaceae) in Mexico: morphological and molecular evidence. Am J Bot 91: 1352–1363.

Vähä J-P, Primmer CR (2006). Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci. Mol Ecol 15: 63–72.

Valbuena-Carabaña M, Gonzalez-Martinez SC, Hardy OJ, Gil L (2007). Fine-scale spatial genetic structure in mixed oak stands with different levels of hybridization. Mol Ecol 16: 1207–1219.

Varela MC, Valdiviesso T (1996). Phenological phases of Quercus suber L. flowering. Forest Genet 3: 93–102.

Weir BS, Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358–1370.

Whittemore AT, Schaal BA (1991). Interspecific gene flow in sympatric oaks. Proc Natl Acad Sci 88: 2540–2544.

Williams JH, Boecklen WJ, Howard DJ (2001). Reproductive processes in two oak (Quercus) contact zones with different levels of hybridization. Heredity 87: 680–690.

Yang BZ, Zhao H, Kranzler HR, Gelernter J (2005). Practical population group assignment with selected informative markers: characteristics and properties of Bayesian clustering via STRUCTURE. J Epidemiol 28: 302–312.