Detection of amino acid substitutions in the GyrA protein of fluoroquinolone-resistant typhoidal Salmonella isolates using high-resolution mass spectrometry

International Journal of Antimicrobial Agents - Tập 47 - Trang 351-356 - 2016
Robert-Jan Hassing1, Wil H. Goessens2, Lona Zeneyedpour3, Sadaf Sultan2, Jeroen J. van Kampen2, Annelies Verbon2, Perry J. van Genderen4, John P. Hays2, Theo M. Luider3, Lennard J. Dekker3
1Department of Internal Medicine and Infectious Diseases, Erasmus MC, University Medical Center Rotterdam, Wytemaweg 80, 3015 CN Rotterdam, The Netherlands
2Department of Medical Microbiology and Infectious Diseases, Erasmus MC, University Medical Center Rotterdam, Wytemaweg 80, 3015 CN Rotterdam, The Netherlands
3Department of Neurology, Neuro-Oncology Laboratory, Erasmus MC, University Medical Center Rotterdam, Wytemaweg 80, 3015 CN Rotterdam, The Netherlands
4Institute for Tropical Diseases, Havenziekenhuis, Haringvliet 72, 3011 TG Rotterdam, The Netherlands

Tài liệu tham khảo

Darton, 2014, Typhoid epidemiology, diagnostics and the human challenge model, Curr Opin Gastroenterol, 30, 7, 10.1097/MOG.0000000000000021 Menezes, 2012, Antimicrobial resistance trends in blood culture positive Salmonella Typhi isolates from Pondicherry, India, 2005–2009, Clin Microbiol Infect, 18, 239, 10.1111/j.1469-0691.2011.03546.x Hassing, 2014, Salmonella subtypes with increased MICs for azithromycin in travelers returned to The Netherlands, Emerg Infect Dis, 20, 705, 10.3201/eid2004.131536 Wong, 2015, Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events, Nat Genet, 47, 632, 10.1038/ng.3281 Hassing, 2011, Analysis of mechanisms involved in reduced susceptibility to ciprofloxacin in Salmonella enterica serotypes Typhi and Paratyphi A isolates from travellers to Southeast Asia, Int J Antimicrob Agents, 37, 240, 10.1016/j.ijantimicag.2010.10.026 Gaind, 2006, Molecular characterization of ciprofloxacin-resistant Salmonella enterica serovar Typhi and Paratyphi A causing enteric fever in India, J Antimicrob Chemother, 58, 1139, 10.1093/jac/dkl391 Clark, 2013, Matrix-assisted laser desorption ionization-time of flight mass spectrometry: a fundamental shift in the routine practice of clinical microbiology, Clin Microbiol Rev, 26, 547, 10.1128/CMR.00072-12 Hrabak, 2013, Matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry for detection of antibiotic resistance mechanisms: from research to routine diagnosis, Clin Microbiol Rev, 26, 103, 10.1128/CMR.00058-12 Lesur, 2015, Screening protein isoforms predictive for cancer using immunoaffinity capture and fast LC–MS in PRM mode, Proteomics Clin Appl, 9, 695, 10.1002/prca.201400158 Dekker, 2011, An antibody-based biomarker discovery method by mass spectrometry sequencing of complementarity determining regions, Anal Bioanal Chem, 399, 1081, 10.1007/s00216-010-4361-9 Keller, 2002, Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search, Anal Chem, 74, 5383, 10.1021/ac025747h Nesvizhskii, 2003, A statistical model for identifying proteins by tandem mass spectrometry, Anal Chem, 75, 4646, 10.1021/ac0341261 IJsselstijn, 2013, Comparative study of targeted and label-free mass spectrometry methods for protein quantification, J Proteome Res, 12, 2005, 10.1021/pr301221f Peterson, 2012, Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics, Mol Cell Proteomics, 11, 1475, 10.1074/mcp.O112.020131 Lin, 2008, Fast and efficient proteolysis by microwave-assisted protein digestion using trypsin-immobilized magnetic silica microspheres, Anal Chem, 80, 3655, 10.1021/ac800023r Feng, 2006, Coupling the immobilized trypsin microreactor of monolithic capillary with muRPLC–MS/MS for shotgun proteome analysis, J Proteome Res, 5, 422, 10.1021/pr0502727