Detection by PCR of eight groups of enteric pathogens in 4,627 faecal samples: re-examination of the English case-control Infectious Intestinal Disease Study (1993–1996)
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Guerrant RL, Hughes JM, Lima NL, Crane J (1990) Diarrhea in developed and developing countries: magnitude, special settings, and etiologies. Rev Infect Dis 12(Suppl 1):S41–S50
Food Standards Agency (2000) A report of the study of infectious intestinal disease in England. Food Standard Agency. The Stationery Office, London
Tompkins D, Hudson MJ, Smith HR, Eglin RP, Wheeler JG, Brett MM, Owen RJ, Brazier JS, Cumberland P, King V, Cook PE (1999) A study of infectious instestinal disease in England: microbiological findings in cases and controls. Commun Dis Public Health 2:108–113
Amar CF, East CL, Grant KA, Gray J, Iturriza-Gomara M, Maclure EA, McLauchlin J (2005) Detection of viral, bacterial, and parasitological RNA or DNA of nine intestinal pathogens in fecal samples archived as part of the English infectious intestinal disease study: assessment of the stability of target nucleic acid. Diagn Mol Pathol 14:90–96
Sethi D, Wheeler JG, Cowden JM, Rodrigues LC, Sockett PN, Roberts JA, Cumberland P, Tompkins DS, Wall PG, Hudson MJ, Roderick PJ (1999) A study of infectious intestinal disease in England: plan and methods of data collection. Commun Dis Public Health 2:101–107
Crowther JS (1971) Transport and storage of faeces for bacterial examination. J Appl Bacteriol 34:477–483
Hudson MJ, Hill MJ, Elliott PR, Berghouse LM, Burnham WR, Lennard-Jones JE (1984) The microbial flora of the rectal mucosa and faeces of patients with Crohn’s disease before and during antimicrobial chemotherapy. J Med Microbiol 18:335–345
Boom R, Sol CJ, Salimans MM, Jansen CL, Wertheim-van Dillen PM, van der Noordaa J (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28:495–503
Green J, Norcott JP, Lewis D, Arnold C, Brown DW (1993) Norwalk-like viruses: demonstration of genomic diversity by polymerase chain reaction. J Clin Microbiol 31:3007–3012
McLauchlin J, Pedraza-Díaz S, Amar-Hoetzeneder C, Nichols GL (1999) Genetic characterization of Cryptosporidium strains from 218 patients with diarrhea diagnosed as having sporadic cryptosporidiosis. J Clin Microbiol 37:3153–3158
Kageyama T, Kojima S, Shinohara M, Uchida K, Fukushi S, Hoshino FB, Takeda N, Katayama K (2003) Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. J Clin Microbiol 41:1548–1557
Best EL, Powell EJ, Swift C, Grant KA, Frost JA (2003) Applicability of a rapid duplex real-time PCR assay for speciation of Campylobacter jejuni and Campylobacter coli directly from culture plates. FEMS Microbiol Lett 229:237–241
Frahm E, Obst U (2003) Application of the fluorogenic probe technique (TaqMan PCR) to the detection of Enterococcus spp. and Escherichia coli in water samples. J Microbiol Methods 52:123–131
Higgins JA, Fayer R, Trout JM, Xiao L, Lal AA, Kerby S, Jenkins MC (2001) Real-time PCR for the detection of Cryptosporidium parvum. J Microbiol Methods 47:323–337
Iturriza Gomarra M, Wong C, Blome S, Desselberger U, Gray J (2002) Molecular characterization of VP6 genes of human rotavirus isolates: correlation of genogroups with subgroups and evidence of independent segregation. J Virol 76:6596–6601
Noel JS, Liu BL, Humphrey CD, Rodriguez EM, Lambden PR, Clarke IN, Dwyer DM, Ando T, Glass RI, Monroe SS (1997) Parkville virus: a novel genetic variant of human calicivirus in the Sapporo virus clade, associated with an outbreak of gastroenteritis in adults. J Med Virol 52:173–178
Vinje J, Deijl H, van der Heide R, Lewis D, Hedlund KO, Svensson L, Koopmans MP (2000) Molecular detection and epidemiology of Sapporo-like viruses. J Clin Microbiol 38:530–536
Linton D, Owen RJ, Stanley J (1996) Rapid identification by PCR of the genus Campylobacter and of five Campylobacter species enteropathogenic for man and animals. Res Microbiol 147:707–718
Hall TA (1999) BioEdit: a friendly biological sequence alignment editor and analysis program for Window 95/98NT. Nucleic Acids Symp Ser 41:95–98
DeBiasi RL, Kleinschmidt-DeMasters BK, Weinberg A, Tyler KL (2002) Use of PCR for the diagnosis of herpesvirus infections of the central nervous system. J Clin Virol 25(Suppl 1):S5–S11
Quinn TC (1995) DNA amplification assays: a new standard for diagnosis of Chlamydia trachomatis infections. Ann Acad Med Singap 24:627–633
Jurstrand M, Jensen JS, Fredlund H, Falk L, Molling P (2005) Detection of Mycoplasma genitalium in urogenital specimens by real-time PCR and by conventional PCR assay. J Med Microbiol 54:23–29
Green J, Gallimore CI, Norcott JP, Lewis D, Brown DW (1995) Broadly reactive reverse transcriptase polymerase chain reaction for the diagnosis of SRSV-associated gastroenteritis. J Med Virol 47:392–398
Amar CF, East C, Maclure E, McLauchlin J, Jenkins C, Duncanson P, Wareing DR (2004) Blinded application of microscopy, bacteriological culture, immunoassays and PCR to detect gastrointestinal pathogens from faecal samples of patients with community-acquired diarrhoea. Eur J Clin Microbiol Infect Dis 23:529–534
Kulkarni SP, Lever S, Logan JM, Lawson AJ, Stanley J, Shafi MS (2002) Detection of Campylobacter species: a comparison of culture and polymerase chain reaction based methods. J Clin Pathol 55:749–753
Iijima Y, Asako NT, Aihara M, Hayashi K (2004) Improvement in the detection rate of diarrhoeagenic bacteria in human stool specimens by rapid real-time PCR assay. J Med Microbiol 53:617–622
Greig JD, Michel P, Wilson JB, Lammerding AM, Majowicz SE, Stratton J, Aramini JJ, Meyers RK, Middleton D, McEwen SA (2001) A descriptive analysis of giardiasis cases reported in Ontario 1990–1998. Can J Public Health 92:361–365
Keystone JS, Krajden S, Warren MR (1978) Person-to-person transmission of Giardia lamblia in day-care nurseries. Can Med Assoc J 119:241–248
Gray SF, Gunnell DJ, Peters TJ (1994) Risk factors for giardiasis: a case-control study in Avon and Somerset. Epidemiol Infect 113:95–102
Nguyen RN, Taylor LS, Tauschek M, Robins-Browne RM (2006) Atypical enteropathogenic Escherichia coli infection and prolonged diarrhea in children. Emerg Infect Dis 12:597–603
Kang G, Iturriza-Gomara M, Wheeler JG, Crystal P, Monica B, Ramani S, Primrose B, Moses PD, Gallimore CI, Brown DW, Gray J (2004) Quantitation of group A rotavirus by real-time reverse-transcription-polymerase chain reaction: correlation with clinical severity in children in south India. J Med Virol 73:118–122
Gray JJ, Cunliffe C, Ball J, Graham DY, Desselberger U, Estes MK (1994) Detection of immunoglobulin M (IgM), IgA, and IgG Norwalk virus-specific antibodies by indirect enzyme-linked immunosorbent assay with baculovirus-expressed Norwalk virus capsid antigen in adult volunteers challenged with Norwalk virus. J Clin Microbiol 32:3059–3063
Caprioli A, Pezzella C, Morelli R, Giammanco A, Arista S, Crotti D, Facchini M, Guglielmetti P, Piersimoni C, Luzzi I (1996) Enteropathogens associated with childhood diarrhea in Italy. The Italian Study Group on gastrointestinal infections. Pediatr Infect Dis J 15:876–883
Lima AA, Moore SR, Barboza MS, Soares AM, Schleupner MA, Newman RD, Sears CL, Nataro JP, Fedorko DP, Wuhib T, Schorling JB, Guerrant RL (2000) Persistent diarrhea signals a critical period of increased diarrhea burdens and nutritional shortfalls: a prospective cohort study among children in northeastern Brazil. J Infect Dis 181:1643–1651
Oyofo B, Subekti D, Tjaniadi P, Machpud N, Komalarini S, Setiawan B, Simanjuntak C, Punjabi N, Corwin A, Wasfy M, Campbell JR, Lesmana M (2002) Enteropathogens associated with acute diarrhea in community and hospital patients in Jakarta, Indonesia. FEMS Immunol Med Microbiol 34:139–146
de Wit MA, Koopmans MP, Kortbeek LM, van Leeuwen NJ, Vinje J, van Duynhoven YT (2001) Etiology of gastroenteritis in sentinel general practices in The Netherlands. Clin Infect Dis 33:280–288
de Wit MA, Koopmans MP, Kortbeek LM, Wannet WJB, Vinje J, van Leusden F, Bartelds AIM, van Duynhoven YT (2001) Sensor, a population-based cohort study on gastroenteritis in The Netherlands: incidence and etiology. Am J Epidemiol 154:666–674
DuPont HL, Sullivan PS (1986) Giardiasis: the clinical spectrum, diagnosis and therapy. Pediatr Infect Dis 5:S131–S138
Homan WL, Gilsing M, Bentala H, Limper L, van Knapen F (1998) Characterization of Giardia duodenalis by polymerase-chain-reaction fingerprinting. Parasitol Res 84:707–714