Design of self-organizing microtubule networks for molecular communication

Arcizet, 2008, Temporal analysis of active and passive transport in living cells, Physical Review Letters, 101, 248103, 10.1103/PhysRevLett.101.248103 Bieling, 2007, Reconstitution of a microtubule plus-end tracking system in vitro, Nature, 450, 1100, 10.1038/nature06386 Bloom, 2000, It’s a kar9ochore to capture microtubules, Nature Cell Biology, 2, E96, 10.1038/35014089 Cai, 2007, Tracking single kinesin molecules in the cytoplasm of mammalian cells, Biophysical Journal, 92, 4137, 10.1529/biophysj.106.100206 de Kievit, 2000, Bacterial quorum sensing in pathogenic relationships, Infection and Immunity, 68, 4839, 10.1128/IAI.68.9.4839-4849.2000 Desai, 1997, Microtubule polymerization dynamics, Annual Review of Cell and Developmental Biology, 13, 83, 10.1146/annurev.cellbio.13.1.83 Doot, 2007, Engineered networks of oriented microtubule filaments for directed cargo transport, Soft Matter, 3, 349, 10.1039/B607281J Dwyer, 2004, DNA self-assembled parallel computer architectures, Nanotechnology, 15, 1688, 10.1088/0957-4484/15/11/055 Hoa, 2007, Towards integrated and sensitive surface plasmon resonance biosensors: a review of recent progress, Biosensors and Bioelectronics, 23, 151, 10.1016/j.bios.2007.07.001 Jahn, 2003, Membrane fusion, Cell, 112, 519, 10.1016/S0092-8674(03)00112-0 Janson, 2003, Dynamic instability of microtubules is regulated by force, Journal of Cell Biology, 161, 1029, 10.1083/jcb.200301147 Job, 2003, Microtubule nucleation, Current Opinion in Cell Biology, 15, 111, 10.1016/S0955-0674(02)00003-0 Kirschner, 1986, Beyond self-assembly: from microtubules to morphogenesis, Cell, 45, 329, 10.1016/0092-8674(86)90318-1 Kojima, 1997, Mechanics of single Kinesin molecules measured by optical trapping nanometry, Biophysical Journal, 73, 2012, 10.1016/S0006-3495(97)78231-6 Kralj, 2003, Medicine on a small scale, EMBO Report, 4, 1008, 10.1038/sj.embor.7400017 Mimori-Kiyosue, 2005, CLASP1 and CLASP2 bind to Eb1 and regulate microtubule plus-end dynamics at the cell cortex, Journal of Cell Biology, 168, 141, 10.1083/jcb.200405094 Mimori-Kiyosue, 2003, “Search-and-capture” of microtubules through plus-end-binding proteins (+TIPs), Journal of Biochemistry, 134, 321, 10.1093/jb/mvg148 Mitchison, 1993, Localization of an exchangeable GTP binding site at the plus end of microtubules, Science, 261, 1044, 10.1126/science.8102497 Mitchison, 1984, Dynamic instability of microtubule growth, Nature, 312, 237, 10.1038/312237a0 Moore, 2009, Molecular communication: modeling noise effects on information rate, IEEE Transactions on Nanobioscience, 8, 180, 10.1109/TNB.2009.2025039 Nedelec, 1997, Self-organization of microtubules and motors, Nature, 389, 305, 10.1038/38532 Pryer, 1992, Brain microtubule-associated proteins modulate microtubule dynamic instability in vitro. Real-time observations using video microscopy, Journal of Cell Science, 103, 965, 10.1242/jcs.103.4.965 Ross, 2008, Kinesin and Dynein-Dynactin at intersecting microtubules: motor density affects Dynein function, Biophysical Journal, 94, 3115, 10.1529/biophysj.107.120014 Rothman, 2002, The machinery and principles of vesicle transport in the cell, Nature Medicine, 8, 1059, 10.1038/nm770 Sakamoto, 2000, Molecular computation by DNA hairpin formation, Science, 288, 1223, 10.1126/science.288.5469.1223 Sasaki, 2009, A nano sensory device fabricated on a liposome for detection of chemical signals, Biotechnology & Bioengineering, 105, 37, 10.1002/bit.22521 Schliwa, 2003, Molecular motors, Nature, 422, 759, 10.1038/nature01601 Seeman, 2005, From genes to machines: DNA nanomechanical devices, Trends in Biochemical Sciences, 30, 119, 10.1016/j.tibs.2005.01.007 Surrey, 2001, Physical properties determining self-organization of motors and microtubules, Science, 292, 1167, 10.1126/science.1059758 Thies, 2008, Abstraction layers for scalable microfluidic biocomputing, Natural Computing, 7, 10.1007/s11047-006-9032-6 van den Heuvel, 2007, Motor proteins at work for nanotechnology, Science, 317, 333, 10.1126/science.1139570 Yokokawa, 2004, Hybrid nanotransport system by biomolecular linear motors, Journal of Micro Electro Mechanical Systems, 13, 612, 10.1109/JMEMS.2004.832193 Zheng, 1995, Nucleation of microtubule assembly by a gamma-tubulin-containing ring complex, Nature, 378, 578, 10.1038/378578a0