Denitrification gene pools, transcription and kinetics of NO, N2O and N2 production as affected by soil pH
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Amann, 1995, Phylogenetic identification and in situ detection of individual microbial cells without cultivation, Microbiol Rev, 59, 143, 10.1128/MMBR.59.1.143-169.1995
Baelum, 2008, Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil, ISME J, 2, 677, 10.1038/ismej.2008.21
Blumberg, 1987, Creating a ribonuclease-free environment, Method Enzymol, 152, 20, 10.1016/0076-6879(87)52005-5
Braker, 1998, Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples, Appl Environ Microb, 64, 3769, 10.1128/AEM.64.10.3769-3775.1998
Braker, 2000, Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities, Appl Environ Microb, 66, 2096, 10.1128/AEM.66.5.2096-2104.2000
Bremner, 1997, Sources of nitrous oxide in soils, Nutr Cycl Agroecosys, 49, 7, 10.1023/A:1009798022569
Chen, 2007, Identification of active methanotrophs in a landfill cover soil through detection of expression of 16S rRNA and functional genes, Environ Microbiol, 9, 2855, 10.1111/j.1462-2920.2007.01401.x
Crutzen, 2008, N2O release from agro-biofuel production negates global warming reduction by replacing fossil fuels, Atmos Chem Phys, 8, 389, 10.5194/acp-8-389-2008
Fierer, 2006, The diversity and biogeography of soil bacterial communities, P Natl Acad Sci USA, 103, 626, 10.1073/pnas.0507535103
Freitag, 2009, Correlation of methane production and functional gene transcriptional activity in a peat soil, Appl Environ Microb, 75, 6679, 10.1128/AEM.01021-09
Frostegård, 1993, Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty acid analysis, Soil Biol Biochem, 25, 723, 10.1016/0038-0717(93)90113-P
Greer, 2001, Genomics technologies for environmental science, Environ Sci Technol, 35, 364A, 10.1021/es0124616
Griffiths, 2000, Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition, Appl Environ Microb, 66, 5488, 10.1128/AEM.66.12.5488-5491.2000
Head, 1998, Microbial evolution, diversity, and ecology, a decade of ribosomal RNA analysis of uncultivated microorganisms, 35, 1
Kloos, 2001, Denitrification within the genus Azospirillum and other associative bacteria, Aust J Plant Physiol, 28, 991
Lane, 1991, Nucleic Acid Techniques in Bacterial Systematics, 131
Leininger, 2006, Archaea predominate among ammonia-oxidizing prokaryotes in soils, Nature, 442, 806, 10.1038/nature04983
Mahmood, 2006, The influence of synthetic sheep urine on ammonia oxidizing bacterial communities in grassland soil, FEMS Microbiol Ecol, 56, 444, 10.1111/j.1574-6941.2006.00070.x
Meckenstock, 1998, Quantification of bacterial mRNA involved in degradation of 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 from liquid culture and from river sediment by reverse transcriptase PCR (RT/PCR), FEMS Microbiol Lett, 167, 123, 10.1111/j.1574-6968.1998.tb13217.x
Michotey, 2000, Comparison of methods for quantification of cytochrome cd(1)-denitrifying bacteria in environmental marine samples, Appl Environ Microb, 66, 1564, 10.1128/AEM.66.4.1564-1571.2000
Molstad, 2007, Robotized incubation system for monitoring gases (O2, NO, N2O, N2) in denitrifying cultures, J Microbiol Meth, 71, 202, 10.1016/j.mimet.2007.08.011
Mørkved, 2007, The N2O product ratio of nitrification and its dependence on long-term changes in soil pH, Soil Biol Biochem, 39, 2048, 10.1016/j.soilbio.2007.03.006
Muyzer, 1993, Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl Environ Microb, 59, 695, 10.1128/AEM.59.3.695-700.1993
Nicolaisen, 2008, Transcription dynamics of the functional tfdA gene during MCPA herbicide degradation by Cupriavidus necator AEO106 (pRO101) in agricultural soil, Environ Microbiol, 10, 571, 10.1111/j.1462-2920.2007.01476.x
Sabersheikh, 2004, Quantification of virulence-associated gene transcripts in epidemic methicillin resistant Staphylococcus aureus by real-time PCR, Mol Cell Probe, 18, 23, 10.1016/j.mcp.2003.07.009
Schlesinger, 2009, On the fate of anthropogenic nitrogen, P Natl Acad Sci USA, 106, 203, 10.1073/pnas.0810193105
Sharma, 2005, Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes, Appl Environ Microb, 71, 2001, 10.1128/AEM.71.4.2001-2007.2005
Simek, 2002, The influence of soil pH on denitrification, progress towards the understanding of this interaction over the last 50 years, 53, 345
Simek, 2002, What is the so-called optimum pH for denitrification in soil?, Soil Biol Biochem, 34, 1227, 10.1016/S0038-0717(02)00059-7
Sitaula, 1992, Rapid analysis of climate gases by wide bore capillary gas-chromatography, J Environ Qual, 21, 493, 10.2134/jeq1992.00472425002100030030x
Skoog, 1992, Fundamentals of Analytical Chemistry
Smith, 2007, Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments, Appl Environ Microb, 73, 3612, 10.1128/AEM.02894-06
Sognnes, 2006, Effects of adding moraine soil or shell sand into peat soil on physical properties and grass yield in western Norway, ACTA Agr Scand B-S P, 56, 161
Thomsen, 1994, Mass spectrometric studies of the effect of pH on the accumulation of intermediates in denitrification by Paracoccus denitrificans, Appl Environ Microb, 60, 536, 10.1128/AEM.60.2.536-541.1994
Tourna, 2008, Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms, Environ Microbiol, 10, 1357, 10.1111/j.1462-2920.2007.01563.x
Zaman, 2007, Can soil amendments (zeolite or lime) shift the balance between nitrous oxide and dinitrogen emissions from pasture and wetland soils receiving urine or urea-N?, Aust J Soil Res, 45, 543, 10.1071/SR07034