Deformation-based shape analysis of the hippocampus in the semantic variant of primary progressive aphasia and Alzheimer’s disease

Addis, 2011, Hippocampal contributions to the episodic simulation of specific and general future events, Hippocampus, 21, 1045, 10.1002/hipo.20870 Amaral, 2018, Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging, Neuroimage, 170, 132, 10.1016/j.neuroimage.2016.10.027 Ashburner, 2007, A fast diffeomorphic image registration algorithm, NeuroImage, 38, 95, 10.1016/j.neuroimage.2007.07.007 Barnes, 2006, Measurements of the amygdala and hippocampus in pathologically confirmed Alzheimer disease and frontotemporal lobar degeneration, Arch Neurol, 63, 1434, 10.1001/archneur.63.10.1434 Braak, 1991, Neuropathological stageing of Alzheimer-related changes, Acta Neuropathol, 82, 239, 10.1007/BF00308809 Brambati, 2015, Longitudinal gray matter contraction in three variants of primary progressive aphasia: A tenser-based morphometry study, NeuroImag. Clinic., 8, 345, 10.1016/j.nicl.2015.01.011 Brambati, 2009, Atrophy progression in semantic dementia with asymmetric temporal involvement: A tensor-based morphometry study, Neurobiol. Aging, 30, 103, 10.1016/j.neurobiolaging.2007.05.014 Chakravarty, 2015, Striatal shape abnormalities as novel neurodevelopmental endophenotypes in schizophrenia: A longitudinal study, Hum Brain Mapp, 36, 1458, 10.1002/hbm.22715 Chakravarty, 2013, Performing label-fusion-based segmentation using multiple automatically generated templates, Hum Brain Mapp, 34, 2635, 10.1002/hbm.22092 Chan, 2001, Patterns of temporal lobe atrophy in semantic dementia and Alzheimer’s disease, Ann. Neurol., 49, 433, 10.1002/ana.92 Chapleau, 2016, Atrophy in Alzheimer’s disease and semantic dementia: An ALE meta-analysis of voxel-based morphometry studies, J. Alzheimer’s Dis. JAD, 54, 941, 10.3233/JAD-160382 Chapleau, 2019, The role of the hippocampus in the semantic variant of primary progressive aphasia: A resting-state fcMRI study, Hippocampus, 29, 1127, 10.1002/hipo.23156 Chetelat, 2008, Three-dimensional surface mapping of hippocampal atrophy progression from MCI to AD and over normal aging as assessed using voxel-based morphometry, Neuropsychologia, 46, 1721, 10.1016/j.neuropsychologia.2007.11.037 Csernansky, 2000, Early DAT is distinguished from aging by high-dimensional mapping of the hippocampus Dementia of the Alzheimer type, Neurology, 55, 1636, 10.1212/WNL.55.11.1636 Csernansky, 2005, Preclinical detection of Alzheimer’s disease: Hippocampal shape and volume predict dementia onset in the elderly, Neuroimage, 25, 783, 10.1016/j.neuroimage.2004.12.036 Davatzikos, 1996, Using a deformable surface model to obtain a shape representation of the cortex, IEEE Trans. Med. Imaging, 15, 785, 10.1109/42.544496 Davies, 2004, The human perirhinal cortex and semantic memory, Eur. J. Neurosci., 20, 2441, 10.1111/j.1460-9568.2004.03710.x Davies, 2009, The neural basis of semantic memory: Evidence from semantic dementia, Neurobiol. Aging, 30, 2043, 10.1016/j.neurobiolaging.2008.02.005 Desgranges, 2007, Anatomical and functional alterations in semantic dementia: A voxel-based MRI and PET study, Neurobiol. Aging, 28, 1904, 10.1016/j.neurobiolaging.2006.08.006 Dubois, 2007, Research criteria for the diagnosis of Alzheimer’s disease: Revising the NINCDS–ADRDA criteria, Lancet Neurol., 6, 734, 10.1016/S1474-4422(07)70178-3 Eskildsen, 2012, BEaST: brain extraction based on nonlocal segmentation technique, Neuroimage, 59, 2362, 10.1016/j.neuroimage.2011.09.012 Fanselow, 2010, Are the dorsal and ventral hippocampus functionally distinct structures?, Neuron, 65, 7, 10.1016/j.neuron.2009.11.031 Fischl, 2008, Cortical folding patterns and predicting cytoarchitecture, Cereb. Cortex, 18, 1973, 10.1093/cercor/bhm225 Fischl, 1999, Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system, Neuroimage, 9, 195, 10.1006/nimg.1998.0396 Folstein, 1975, “Mini-mental state”: A practical method for grading the cognitive state of patients for the clinician, J. Psychiatr. Res., 12, 189, 10.1016/0022-3956(75)90026-6 Frisoni, 2010, The clinical use of structural MRI in Alzheimer disease, Nat Rev Neurol, 6, 67, 10.1038/nrneurol.2009.215 Frisoni, 2006, In vivo neuropathology of the hippocampal formation in AD: a radial mapping MR-based study, Neuroimage, 32, 104, 10.1016/j.neuroimage.2006.03.015 Galton, 2001, Differing patterns of temporal atrophy in Alzheimer’s disease and semantic dementia, Neurology, 57, 216, 10.1212/WNL.57.2.216 Gerardin, 2009, Multidimensional classification of hippocampal shape features discriminates Alzheimer’s disease and mild cognitive impairment from normal aging, Neuroimage, 47, 1476, 10.1016/j.neuroimage.2009.05.036 Gorno-Tempini, 2004, Cognition and anatomy in three variants of primary progressive aphasia, Ann. Neurol., 55, 335, 10.1002/ana.10825 Gorno-Tempini, 2011, Classification of primary progressive aphasia and its variants, Neurol., 76, 1006, 10.1212/WNL.0b013e31821103e6 Hodges, J. R., Patterson, K., Oxbury, S., & Funnell, E. (1992). Semantic dementia. Progressive fluent aphasia with temporal lobe atrophy. Brain, 115 (Pt 6), 1783–806. https://doi.org/10.1093/brain/115.6.1783. Jack, 2011, Steps to standardization and validation of hippocampal volumetry as a biomarker in clinical trials and diagnostic criterion for Alzheimer’s disease, Alzheimers Dement, 7, 474, 10.1016/j.jalz.2011.04.007 Kramer, 2003, Distinctive neuropsychological patterns in frontotemporal dementia, semantic dementia, and Alzheimer disease, Cogn. Behav. Neurol., 16, 211, 10.1097/00146965-200312000-00002 Laakso, 1998, MRI of the hippocampus in Alzheimer’s disease: Sensitivity, specificity, and analysis of the incorrectly classified subjects, Neurobiol. Aging, 19, 23, 10.1016/S0197-4580(98)00006-2 La Joie, 2014, Intrinsic connectivity identifies the hippocampus as a main crossroad between Alzheimer’s and semantic dementia-targeted networks, Neuron, 81, 1417, 10.1016/j.neuron.2014.01.026 La Joie, 2013, Hippocampal subfield volumetry in mild cognitive impairment, Alzheimer’s disease and semantic dementia, Neuroimage Clin, 3, 155, 10.1016/j.nicl.2013.08.007 Lehmann, 2010, Atrophy patterns in Alzheimer’s disease and semantic dementia: A comparison of FreeSurfer and manual volumetric measurements, Neuroimage, 49, 2264, 10.1016/j.neuroimage.2009.10.056 Li, 2007, Hippocampal shape analysis of Alzheimer disease based on machine learning methods, AJNR Am J Neuroradiol, 28, 1339, 10.3174/ajnr.A0620 Lindberg, 2012, Hippocampal shape analysis in Alzheimer’s disease and frontotemporal lobar degeneration subtypes, J. Alzheimers Dis., 30, 355, 10.3233/JAD-2012-112210 McKhann, 2011, The diagnosis of dementia due to Alzheimer’s disease: Recommendations from the National Institute on Aging-Alzheimer’s Association workgroups on diagnostic guidelines for Alzheimer’s disease, Alzheimers Dement, 7, 263, 10.1016/j.jalz.2011.03.005 Morris, 1993, The Clinical Dementia Rating (CDR): Current version and scoring rules, Neurology, 43, 2412, 10.1212/WNL.43.11.2412-a Mummery, 2000, A voxel-based morphometry study of semantic dementia: Relationship between temporal lobe atrophy and semantic memory, Ann. Neurol., 47, 36, 10.1002/1531-8249(200001)47:1<36::AID-ANA8>3.0.CO;2-L Neary, 1998, Frontotemporal lobar degeneration: A consensus on clinical diagnostic criteria, Neurology, 51, 1546, 10.1212/WNL.51.6.1546 Nestor, 2006, Declarative memory impairments in Alzheimer’s disease and semantic dementia, Neuroimage, 30, 1010, 10.1016/j.neuroimage.2005.10.008 Pedraza, 2004, Asymmetry of the hippocampus and amygdala in MRI volumetric measurements of normal adults, J. Int. Neuropsychol. Soc., 10, 664, 10.1017/S1355617704105080 Pipitone, 2014, Multi-atlas segmentation of the whole hippocampus and subfields using multiple automatically generated templates, Neuroimage, 101, 494, 10.1016/j.neuroimage.2014.04.054 Ponce, M., van Zon, R., Northrup, S., Gruner, D., Chen, J., Ertinaz, F., Fedoseev, A., Groer, L., Mao, F., Mundim, B. C., Nolta, M., Pinto, J., Saldarriaga, M., Slavnic, V., Spence, E., Yu, C.-H., & Peltier, W. R. (2019). Deploying a Top-100 Supercomputer for Large Parallel Workloads: The Niagara Supercomputer. Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning), 34:1–34:8. https://doi.org/10.1145/3332186.3332195. Raznahan, 2014, Longitudinal four-dimensional mapping of subcortical anatomy in human development, PNAS, 111, 1592, 10.1073/pnas.1316911111 Rohrer, 2008, Tracking progression in frontotemporal lobar degeneration: Serial MRI in semantic dementia, Neurology, 71, 1445, 10.1212/01.wnl.0000327889.13734.cd Rosen, 2002, Patterns of brain atrophy in frontotemporal dementia and semantic dementia, Neurology, 58, 198, 10.1212/WNL.58.2.198 Scher, 2007, Hippocampal shape analysis in Alzheimer’s disease: A population-based study, Neuroimage, 36, 8, 10.1016/j.neuroimage.2006.12.036 Seeley, 2009, Neurodegenerative diseases target large-scale human brain networks, Neuron, 62, 42, 10.1016/j.neuron.2009.03.024 Spreng, 2009, The common neural basis of autobiographical memory, prospection, navigation, theory of mind, and the default mode: A quantitative meta-analysis, J. Cogn. Neurosci., 21, 489, 10.1162/jocn.2008.21029 Tepest, 2008, Hippocampal surface analysis in subjective memory impairment, mild cognitive impairment and Alzheimer’s dementia, Dement. Geriatr. Cogn Disord., 26, 323, 10.1159/000161057 Tosun, 2008, A geometry-driven optical flow warping for spatial normalization of cortical surfaces, IEEE Trans. Med. Imaging, 27, 1739, 10.1109/TMI.2008.925080 Tustison, 2010, N4ITK: improved N3 bias correction, IEEE Trans. Med. Imaging, 29, 1310, 10.1109/TMI.2010.2046908 Voineskos, 2015, Hippocampal (subfield) volume and shape in relation to cognitive performance across the adult lifespan: Hippocampal Volume, Shape, and Age-Related Cognitive Performance, Hum. Brain Mapp., 36, 3020, 10.1002/hbm.22825 Wang, 2006, Abnormalities of hippocampal surface structure in very mild dementia of the Alzheimer type, Neuroimage, 30, 52, 10.1016/j.neuroimage.2005.09.017 Wang, 2003, Changes in hippocampal volume and shape across time distinguish dementia of the Alzheimer type from healthy aging, Neuroimage, 20, 667, 10.1016/S1053-8119(03)00361-6 Winterburn, 2013, A novel in vivo atlas of human hippocampal subfields using high-resolution 3T magnetic resonance imaging, NeuroImage, 74, 254, 10.1016/j.neuroimage.2013.02.003 Zeidman, 2016, Anterior hippocampus: The anatomy of perception, imagination and episodic memory, Nat. Rev. Neurosci., 17, 173, 10.1038/nrn.2015.24