Decoding molecular interactions in microbial communities

10.1016/j.cels.2015.08.013

Barnard, 1996, The alpha-hemolysin of Streptococcus gordonii is hydrogen peroxide, Infect Immun, 64, 3853, 10.1128/IAI.64.9.3853-3857.1996

Barnard, 1999, Influence of environmental conditions on hydrogen peroxide formation by Streptococcus gordonii, Infect Immun, 67, 6558, 10.1128/IAI.67.12.6558-6564.1999

10.1128/AEM.72.5.3593-3599.2006

10.1038/ismej.2013.78

10.1038/nrmicro3378

10.1038/nbt.3043

10.1002/mas.21468

10.1111/j.1365-2672.2005.02605.x

10.1128/JB.00554-07

10.1038/nature17645

10.1016/j.ijmm.2016.02.010

10.1073/pnas.0509384103

10.1016/0003-9969(67)90201-4

10.1017/S1431927613013482

10.1111/j.1600-0765.2010.01278.x

10.1111/j.1365-2958.2011.07741.x

10.1371/journal.pgen.1002272

10.1021/bi991752c

10.1074/jbc.M105390200

10.1074/jbc.M203535200

10.1038/nbt.3011

10.1016/j.imlet.2014.08.017

Crofts, 2014, A bioassay for the detection of benzimidazoles reveals their presence in a range of environmental samples, Front Microbiol, 5, 592, 10.3389/fmicb.2014.00592

10.1016/j.chembiol.2013.08.006

10.1038/nrn3346

10.1016/j.archoralbio.2011.02.009

10.1186/gb-2014-15-7-r89

10.1016/j.chom.2013.12.007

10.1126/science.1178223

10.1371/journal.pbio.0060280

10.1128/JB.00542-10

10.1073/pnas.0407024101

10.1016/j.chembiol.2010.02.010

10.1126/science.1110591

10.1126/science.1237439

10.1371/journal.pone.0097338

10.1126/science.281.5374.237

10.1016/j.chom.2011.10.002

10.1038/nrmicro3451

10.1002/cbic.200800099

10.1038/nrg.2015.16

Gomaa, 2014, Programmable removal of bacterial strains by use of genome-targeting CRISPR-Cas systems, MBio, 5.1, e00928

10.1073/pnas.1102938108

10.1016/j.chom.2009.08.003

10.1016/j.cell.2014.09.053

Gordon, 1971, The germ-free animal as a tool in the study of host microbial relationships, Bacteriol Rev, 35, 390, 10.1128/MMBR.35.4.390-429.1971

10.1073/pnas.0609270104

10.1111/j.1365-2958.2009.06928.x

10.1038/ismej.2011.191

10.1126/science.1100025

10.1073/pnas.1000071108

10.1016/j.celrep.2014.03.070

10.1073/pnas.1509132112

10.1016/j.chembiol.2013.08.007

10.3748/wjg.v20.i5.1192

10.1073/pnas.0801389105

10.1126/science.1165578

10.1038/nature11234

10.1038/ismej.2014.143

10.1016/j.archoralbio.2013.08.006

10.1126/science.1118052

10.1073/pnas.1519288112

10.1128/JB.185.16.4693-4698.2003

10.1126/science.1248575

10.1128/AEM.71.1.467-479.2005

Kolenbrander, 1989, Coaggregation of Fusobacterium nucleatum, Selenomonas flueggei, Selenomonas infelix, Selenomonas noxia, and Selenomonas sputigena with strains from 11 genera of oral bacteria, Infect Immun, 57, 3194, 10.1128/IAI.57.10.3194-3203.1989

10.1038/nrmicro2381

Kosina SM Danielewicz MA Mohammed M . Exometabolomics assisted design and validation of synthetic obligate mutualism. ACS Synth Biol 2016.

10.1002/hlca.200390313

10.1128/AEM.00653-09

10.1038/nchembio.1535

10.1098/rstl.1684.0030

10.1073/pnas.0504978102

10.1038/4441022a

Li, 2014, The importance of the viable but non-culturable state in human bacterial pathogens, Front Microbiol, 5, 258, 10.3389/fmicb.2014.00258

10.1073/pnas.1018391108

Loubinoux, 2002, Reclassification of the only species of the genus Desulfomonas, Desulfomonas pigra, as Desulfovibrio piger comb. nov, Int J Syst Evol Micr, 52, 1305

10.1038/nature15512

10.1038/ismej.2013.89

10.1146/annurev-anchem-062012-092628

10.1073/pnas.1522149113

10.1039/BK9781847559159-00053

Mehta, 2015, Anaerobic 5-hydroxybenzimidazole formation from aminoimidazole ribotide: an unanticipated intersection of thiamin and vitamin B12 biosynthesis, J Am Chem Soc, 137, 10444, 10.1021/jacs.5b03576

Men, 2014, Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities, Environ Microbiol, 17, 4873, 10.1111/1462-2920.12500

10.1111/j.1462-2920.2009.02083.x

10.1128/JB.01282-12

10.3389/fmicb.2014.00190

10.1021/bi301142h

10.1128/AEM.01754-09

10.1128/AEM.00890-15

10.1016/j.tim.2008.04.004

10.1016/j.mib.2009.04.003

10.1038/nbt.1614

10.1038/ismej.2015.212

10.1038/ncomms7238

10.1146/annurev-marine-120308-081034

Partensky, 1999, Prochlorococcus, a marine photosynthetic prokaryote of global significance, Microbiol Mol Biol R, 63, 106, 10.1128/MMBR.63.1.106-127.1999

10.1128/JB.183.12.3770-3783.2001

10.1128/IAI.00345-09

10.1073/pnas.0711303105

10.1038/nchembio.739

Pollich, 1995, Identification and sequence analysis of genes involved in late steps in cobalamin (vitamin B12) synthesis in Rhodobacter capsulatus, J Bacteriol, 177, 4481, 10.1128/jb.177.15.4481-4487.1995

10.1371/journal.ppat.1002012

10.1073/pnas.0809533106

10.1021/cr050362v

Renz P . Biosynthesis of the 5,6-Dimethylbenzimidazole Moiety of Cobalamin and of the Other Bases Found in Natural Corrinoids, Chemistry and Biochemistry of B12. New York: John Wiley & Sons; 1999. p. 557-76.

10.1073/pnas.1312524110

10.1039/c0an00312c

10.1038/ismej.2011.3

10.1073/pnas.1307876110

10.1146/annurev.micro.50.1.137

10.1111/j.1399-302X.2007.00399.x

10.1023/A:1022525626986

Salyers, 1988, Importance of mucopolysaccharides as substrates for Bacteroides thetaiotaomicron growing in intestinal tracts of exgermfree mice, Appl Environ Microb, 54, 1970, 10.1128/AEM.54.8.1970-1976.1988

10.1073/pnas.0602187103

10.1126/science.aad7154

10.1038/nrc3610

10.1146/annurev.nu.02.070182.002015

10.3389/fmicb.2014.00350

10.1038/ismej.2011.1

10.1159/000351663

Simón-Soro, 2014, Metatranscriptomics reveals overall active bacterial composition in caries lesions, J Oral Microbiol, 6, 25443, 10.3402/jom.v6.25443

10.1128/AEM.06813-11

Socransky, 1985, Chemically defined medium for oral microorganisms, J Clin Microbiol, 22, 303, 10.1128/JCM.22.2.303-305.1985

10.1038/nature16504

10.1073/pnas.1400586111

10.1146/annurev.micro.58.030603.123605

10.1038/nature01929

10.1126/science.1261359

10.1038/nature05611

10.1038/srep08136

10.1111/1348-0421.12220

Tancula, 1992, Location and characterization of genes involved in binding of starch to the surface of Bacteroides thetaiotaomicron, J Bacteriol, 174, 5609, 10.1128/jb.174.17.5609-5616.1992

10.1016/j.febslet.2010.06.013

10.1016/j.celrep.2015.02.049

Thomson, 1999, Direct selection of IS903 transposon insertions by use of a broad-host-range vector: isolation of catalase-deficient mutants of Actinobacillus actinomycetemcomitans, J Bacteriol, 181, 7298, 10.1128/JB.181.23.7298-7307.1999

10.1128/AEM.02385-10

10.1128/mBio.00459-13

10.1074/jbc.272.28.17662

10.1016/j.chom.2008.02.015

10.1038/nature07540

10.1126/scitranslmed.3000322

10.1053/j.gastro.2014.03.001

10.1016/j.syapm.2012.03.004

10.1073/pnas.1101134108

10.1038/ismej.2013.18

10.1016/j.phrs.2012.11.006

Walsh EA Kirkpatrick JB Rutherford SD . Bacterial diversity and community composition from seasurface to subseafloor. 2015;10:979-89.

10.1039/b108967f

10.1016/0968-0004(90)90304-T

10.1038/nature15733

Willis CL Cummings JH Neale G . In vitro effects of mucin fermentation on the growth of human colonic sulphate-reducing bacteria. Anaerobe 1996:117-22.

10.1016/j.cell.2014.05.041

10.1111/j.1462-2920.2011.02511.x

10.1111/1462-2920.12745

10.1128/AEM.02150-12

10.1186/1471-2164-10-78