Deciphering environmental factors and defense response of rice genotypes against sheath blight disease

Singh, 2019, Sheath blight of rice: a review and identification of priorities for future research, Planta, 10.1007/s00425-019-03246-8 2019 Margani, 2018, Utilizing Bacillus to inhibit the growth and infection by sheath blight pathogen, Rhizoctoniasolani in rice Molla, 2020, Understanding sheath blight resistance in rice: the road behind and the road ahead, Plant Biotechnol. J, 10.1111/pbi.13312 Dey, 2016, Identification and agro-morphological characterization of rice genotypes resistant to sheath blight, Australas. Plant Pathol., 10.1007/s13313-016-0404-9 Goswami, 2019, Morphological characterization and screening for sheath blight resistance using Indian isolates of Rhizoctonia solani AG1IA, Indian Phytopathol., 10.1007/s42360-018-0103-2 Liu, 2009, Mapping quantitative trait loci responsible for resistance to sheath blight in rice, Phytopathology, 10.1094/PHYTO-99-9-1078 Chandrakanth, 2018, Biochemical defence responses of resistant and susceptible rice genotypes against blast pathogen Magnaporthe oryzae, Arch. Phytopathol. Plant Protect., 10.1080/03235408.2018.1527745 Mondal, 2012, Changes in defence-related enzymes in rice responding to challenges by Rhizoctonia solani, Arch. Phytopathol. Plant Protect., 10.1080/03235408.2012.712831 Mohapatra, 2016, Histo-chemical and biochemical analysis reveals association of er1 mediated powdery mildew resistance and redox balance in pea, Plant Physiol. Biochem., 10.1016/j.plaphy.2016.04.035 Bolwell Mittler, 2002, Oxidative stress, antioxidants and stress tolerance, Trends Plant Sci., 10.1016/S1360-1385(02)02312-9 Srivastava, 1987, Peroxidase and poly-phenol oxidase in Brassica juncea plants infected with macrophomina phaseolina (Tassai) goid. And their implication in disease resistance, J. Phytopathol., 10.1111/j.1439-0434.1987.tb04439.x 2017 2013, Standard evaluation system for rice, Int. Rice Res. Instiitute., 55 Naveenkumar Sharma, 1990, Comparison of rice sheath blight (ShB) assessment methods, Int. Rice Res. Newsl. Baker, 1970 Shaner, 1977, The effect of nitrogen fertilization on the expression of slow-mildewing resistance in Knox wheat, Phytopathology, 10.1094/Phyto-67-1051 Murray, 1980, Rapid isolation of high molecular weight plant DNA, Nucleic Acids Res., 10.1093/nar/8.19.4321 Liu, 2005, PowerMaker: an integrated analysis environment for genetic maker analysis, Bioinformatics Perrier Peakall, 2012, GenALEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update, Bioinformatics, 10.1093/bioinformatics/bts460 Pritchard, 2000, Inference of population structure using multilocus genotype data, Genetics, 10.1093/genetics/155.2.945 Evanno, 2005, Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study, Mol. Ecol., 10.1111/j.1365-294X.2005.02553.x Earl, 2012, Structure harvester: a website and program for visualizing STRUCTURE output and implementing the Evanno method, Conserv. Genet. Resour., 10.1007/s12686-011-9548-7 Hammerschmidt, 1982, Association of enhanced peroxidase activity with induced systemic resistance of cucumber to Colletotrichum lagenarium, Physiol. Plant Pathol., 10.1016/0048-4059(82)90025-X Dickerson, 1984, Phenylalanine ammonia-lyase and hydroxycinnamate: CoA ligase in maize mesocotyls inoculated with Helminthosporium maydis or Helminthosporium carbonum, Physiol. Plant Pathol., 10.1016/0048-4059(84)90050-X Dhindsa, 1981, Leaf senescence: correlated with increased levels of membrane permeability and lipid peroxidation, and decreased levels of superoxide dismutase and catalase, J. Exp. Bot., 10.1093/jxb/32.1.93 Chaparro-Giraldo, 2000, Soybean leghemoglobin targeted to potato chloroplasts influences growth and development of transgenic plants, Plant Cell Rep., 10.1007/s002990000254 Lê, 2008, FactoMineR: an R package for multivariate analysis, J. Stat. Software, 10.18637/jss.v025.i01 Galili, 2015, dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering, Bioinformatics, 10.1093/bioinformatics/btv428 Wei, 2016 Pradhan, 2020, Linkage disequilibrium mapping for grain Fe and Zn enhancing QTLs useful for nutrient dense rice breeding, BMC Plant Biol., 20, 10.1186/s12870-020-2262-4 Anandan, 2016, Population structure, diversity and trait association analysis in rice (Oryza sativa L.) germplasm for early seedling vigor (ESV) using trait linked SSR markers, PLoS One, 10.1371/journal.pone.0152406 Yadav, 2019, Blast resistance in Indian rice landraces: genetic dissection by gene specific markers, PLoS One Cowan, 1999, Plant products as antimicrobial agents, Clin. Microbiol. Rev., 10.1128/CMR.12.4.564 Pavani, 2020, Screening for novel rice sheath blight resistant germplasm and their biochemical characterization, Indian Phytopathol., 10.1007/s42360-020-00284-1 Anushree, 2016, Activity profile of defence-related enzymes in rice genotypes (Oryza sativa L.) against rice blast (Magnaporthe oryzae), Arch. Phytopathol. Plant Protect., 10.1080/03235408.2016.1171424 Dixon, 2001, Natural products and plant disease resistance, Nature, 10.1038/35081178 Anandan, 2009, Analysis of resistance mechanism to Atherigona soccata in crosses of sorghum, Plant Breed., 10.1111/j.1439-0523.2008.01605.x Gupta, 2012, The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice, J. Exp. Bot., 10.1093/jxb/err297 Anandan, 2012, Relative proportion of antioxidative enzyme activity in locally grown Indian rice cultivars (Oryza sativa L.) under submergence condition, J. Plant Interact., 7, 183, 10.1080/17429145.2011.585247 Torres, 2006, Reactive oxygen species signaling in response to pathogens, Plant Physiol., 106 Pal, 2017, Effect of weather parameters on the initiation and progression of sheath blight of rice, J. Agrometeorol. Hashiba, 1982, Model of vertical development of sheath blight lesions on rice plants caused by Rhizoctonia solani Kuhn, Japanese J. Phytopathol., 10.3186/jjphytopath.48.499 Ahmed, 2014, Characterization of dihydroflavonol 4-reductase (DFR) genes and their association with cold and freezing stress in Brassica rapa, Gene, 10.1016/j.gene.2014.08.013 Zhang, 2019, Accumulation of anthocyanins: an adaptation strategy of mikania micrantha to low temperature in winter, Front. Plant Sci. Zhang, 2019, Genome-wide association analysis of the genetic basis for sheath blight resistance in rice, Rice, 10.1186/s12284-019-0351-5