Dancing in local space: rolling hoop orbital amplification combined with local cascade nanozyme catalytic system to achieve ultra-sensitive detection of exosomal miRNA

Journal of Nanobiotechnology - Tập 20 Số 1 - Trang 1-14 - 2022
Gao, Xin1, Wu, Haiping1, Li, Yujian2, Zhang, Lu1, Song, Mingxuan1, Fu, Xuhuai3, Chen, Rui1, Ding, Shijia1, Zeng, Jiawei4, Li, Jia5, Liu, Ping1,6
1Key Laboratory of Clinical Laboratory Diagnostics (Ministry of Education), College of Laboratory Medicine, Chongqing Medical University, Chongqing, People’s Republic of China
2Department of Orthopedics, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People’s Republic of China
3Department of Clinical Laboratory, Chongqing University Cancer Hospital, Chongqing Cancer Institute, Chongqing Cancer Hospital, Chongqing, People’s Republic of China
4Department of Clinical Laboratory, School of Medicine, Mianyang Central Hospital, University of Electronic Science and Technology of China, Mianyang, People’s Republic of China
5The Center for Clinical Molecular Medical Detection, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People’s Republic of China
6Bioscience (Tianjin) Diagnostic Technology CO., LTD, Tianjin, People’s Republic of China

Tóm tắt

The exosomal miRNA (exo-miRNA) derived from tumor cells contains rich biological information that can effectively aid in the early diagnosis of disease. However, the extremely low abundance imposes stringent requirements for accurate detection techniques. In this study, a novel, protease-free DNA amplification strategy, known as “Rolling Hoop Orbital Amplification” (RHOA), was initially developed based on the design concept of local reaction and inspired by the childhood game of rolling iron ring. Benefiting from the local space constructed by the DNA orbital, the circular DNA enzyme rolls directionally and interacts efficiently with the amplification element, making it nearly 3-fold more productive than conventional free-diffusion amplification. Similarly, the localized cascade nanozyme catalytic system formed by bridging DNA probes also exhibits outperformed than free ones. Therefore, a localized energized high-performance electrochemiluminescence (ECL) biosensor was constructed by bridging cascading nanozymes on the electrode surface through DNA probes generated by RHOA, with an impressive limit of detection (LOD) of 1.5 aM for the detection of exosomal miRNA15a-5p and a stable linearity over a wide concentration range from 10− 2 to 108 fM. Thus, this work is a focused attempt at the localized reaction, which is expected to provide a reliable method for accurately detecting of exo-miRNAs.

Tài liệu tham khảo

citation_journal_title=Adv Cancer Res; citation_title=Ceramide and exosomes: a novel target in cancer biology and therapy; citation_author=A Elsherbini, E Bieberich; citation_volume=140; citation_publication_date=2018; citation_pages=121-154; citation_doi=10.1016/bs.acr.2018.05.004; citation_id=CR1 citation_journal_title=J Biol Chem; citation_title=Vesicle formation during reticulocyte maturation. Association of plasma membrane activities with released vesicles (exosomes); citation_author=RM Johnstone, M Adam, JR Hammond, L Orr, C Turbide; citation_volume=262; citation_issue=19; citation_publication_date=1987; citation_pages=9412-20; citation_doi=10.1016/S0021-9258(18)48095-7; citation_id=CR2 citation_journal_title=Blood Cells Mol Dis; citation_title=Revisiting the road to the discovery of exosomes; citation_author=RM Johnstone; citation_volume=34; citation_issue=3; citation_publication_date=2005; citation_pages=214-9; citation_doi=10.1016/j.bcmd.2005.03.002; citation_id=CR3 citation_journal_title=Gene; citation_title=MicroRNA profiling in kidney disease: plasma versus plasma-derived exosomes; citation_author=JX Xie, X Fan, CA Drummond, R Majumder, Y Xie, T Chen, L Liu, ST Haller, PS Brewster, LD Dworkin, CJ Cooper, J Tian; citation_volume=627; citation_publication_date=2017; citation_pages=1-8; citation_doi=10.1016/j.gene.2017.06.003; citation_id=CR4 citation_journal_title=Science; citation_title=The biology, function, and biomedical applications of exosomes; citation_author=R Kalluri, VS LeBleu; citation_volume=367; citation_issue=6478; citation_publication_date=2020; citation_pages=eaau6977; citation_doi=10.1126/science.aau6977; citation_id=CR5 citation_journal_title=Cell; citation_title=Reassessment of exosome composition; citation_author=DK Jeppesen, AM Fenix, JL Franklin, JN Higginbotham, Q Zhang, LJ Zimmerman, DC Liebler, J Ping, Q Liu, R Evans, WH Fissell, JG Patton, LH Rome, DT Burnette, RJ Coffey; citation_volume=177; citation_issue=2; citation_publication_date=2019; citation_pages=428-445.e18; citation_doi=10.1016/j.cell.2019.02.029; citation_id=CR6 citation_journal_title=J Nanobiotechnol; citation_title=Image-guided selection of Gd@C-dots as sensitizers to improve radiotherapy of non-small cell lung cancer; citation_author=X Ma, C Lee, T Zhang, J Cai, H Wang, F Jiang, Z Wu, J Xie, G Jiang, Z Li; citation_volume=19; citation_issue=1; citation_publication_date=2021; citation_pages=284; citation_doi=10.1186/s12951-021-01018-9; citation_id=CR7 citation_journal_title=Int J Mol Sci; citation_title=Deciphering miRNAs’ Action through miRNA Editing; citation_author=M Correia de Sousa, M Gjorgjieva, D Dolicka, C Sobolewski, M Foti; citation_volume=20; citation_issue=24; citation_publication_date=2019; citation_pages=6249; citation_doi=10.3390/ijms20246249; citation_id=CR8 citation_journal_title=Cell Commun Signal; citation_title=Tumor-derived extracellular vesicles: reliable tools for Cancer diagnosis and clinical applications; citation_author=R Rahbarghazi, N Jabbari, NA Sani, R Asghari, L Salimi, SA Kalashani, M Feghhi, T Etemadi, E Akbariazar, M Mahmoudi, J Rezaie; citation_volume=17; citation_issue=1; citation_publication_date=2019; citation_pages=73; citation_doi=10.1186/s12964-019-0390-y; citation_id=CR9 citation_journal_title=Nature; citation_title=MicroRNA silencing for cancer therapy targeted to the tumour microenvironment; citation_author=CJ Cheng, R Bahal, IA Babar, Z Pincus, F Barrera, C Liu, A Svoronos, DT Braddock, PM Glazer, DM Engelman, WM Saltzman, FJ Slack; citation_volume=518; citation_issue=7537; citation_publication_date=2015; citation_pages=107-10; citation_doi=10.1038/nature13905; citation_id=CR10 citation_journal_title=Mol Oncol; citation_title=The validity of circulating microRNAs in oncology: five years of challenges and contradictions; citation_author=J Jarry, D Schadendorf, C Greenwood, A Spatz, LC Kempen; citation_volume=8; citation_issue=4; citation_publication_date=2014; citation_pages=819-29; citation_doi=10.1016/j.molonc.2014.02.009; citation_id=CR11 citation_journal_title=Biosens Bioelectron; citation_title=Electrochemical biosensor for ultrasensitive exosomal miRNA analysis by cascade primer exchange reaction and MOF@Pt@MOF nanozyme; citation_author=X Li, X Li, D Li, M Zhao, H Wu, B Shen, P Liu, S Ding; citation_volume=168; citation_publication_date=2020; citation_pages=112554; citation_doi=10.1016/j.bios.2020.112554; citation_id=CR12 citation_journal_title=Front Mol Neurosci; citation_title=Circulating exosomal miRNA as diagnostic biomarkers of neurodegenerative diseases; citation_author=L Wang, L Zhang; citation_volume=13; citation_publication_date=2020; citation_pages=53; citation_doi=10.3389/fnmol.2020.00053; citation_id=CR13 citation_journal_title=Cancer Lett; citation_title=Exosomes in cancer: small transporters with big functions; citation_author=X Li, Y Wang, Q Wang, Y Liu, W Bao, S Wu; citation_volume=435; citation_publication_date=2018; citation_pages=55-65; citation_doi=10.1016/j.canlet.2018.07.037; citation_id=CR14 citation_journal_title= J Cell Physiol ; citation_title=An overview of microRNAs: Biology, functions, therapeutics, and analysis methods; citation_author=K Saliminejad, Khorshid HR Khorram, Fard S Soleymani, SH Ghaffari; citation_volume=234; citation_issue=5; citation_publication_date=2019; citation_pages=5451-65; citation_doi=10.1002/jcp.27486; citation_id=CR15 citation_journal_title=Nucleic Acids Res; citation_title=Real-time expression profiling of microRNA precursors in human cancer cell lines; citation_author=J Jiang, EJ Lee, Y Gusev, TD Schmittgen; citation_volume=33; citation_issue=17; citation_publication_date=2005; citation_pages=5394-403; citation_doi=10.1093/nar/gki863; citation_id=CR16 citation_journal_title=Emerg Microbes Infect; citation_title=ddPCR: a more accurate tool for SARS-CoV-2 detection in low viral load specimens; citation_author=T Suo, X Liu, J Feng, M Guo, W Hu, D Guo, H Ullah, Y Yang, Q Zhang, X Wang, M Sajid, Z Huang, L Deng, T Chen, F Liu, K Xu, Y Liu, Q Zhang, Y Liu, Y Xiong, G Chen, K Lan, Y Chen; citation_volume=9; citation_issue=1; citation_publication_date=2020; citation_pages=1259-1268; citation_doi=10.1080/22221751.2020.1772678; citation_id=CR17 citation_journal_title=Biosens Bioelectron; citation_title=Rapid electrochemical biosensor for sensitive profiling of exosomal microRNA based on multifunctional DNA tetrahedron assisted catalytic hairpin assembly; citation_author=Y Zhang, X Zhang, B Situ, Y Wu, S Luo, L Zheng, Y Qiu; citation_volume=183; citation_publication_date=2021; citation_pages=113205; citation_doi=10.1016/j.bios.2021.113205; citation_id=CR18 citation_journal_title=Small; citation_title=Quantitative and specific detection of exosomal miRNAs for accurate diagnosis of breast cancer using a surface-enhanced raman scattering sensor based on plasmonic head-flocked gold nanopillars; citation_author=JU Lee, WH Kim, HS Lee, KH Park, SJ Sim; citation_volume=15; citation_issue=17; citation_publication_date=2019; citation_pages=e1804968; citation_doi=10.1002/smll.201804968; citation_id=CR19 citation_journal_title=Anal Chem; citation_title=In situ formation of gold nanoparticles decorated Ti; citation_author=H Zhang, Z Wang, F Wang, Y Zhang, H Wang, Y Liu; citation_volume=92; citation_issue=7; citation_publication_date=2020; citation_pages=5546-5553; citation_doi=10.1021/acs.analchem.0c00469; citation_id=CR20 citation_journal_title=Anal Chem; citation_title=Multivalency interface and g-C3N4 coated liquid metal nanoprobe signal amplification for sensitive electrogenerated chemiluminescence detection of exosomes and their surface proteins; citation_author=Y Zhang, F Wang, H Zhang, H Wang, Y Liu; citation_volume=91; citation_issue=18; citation_publication_date=2019; citation_pages=12100-12107; citation_doi=10.1021/acs.analchem.9b03427; citation_id=CR21 citation_journal_title=Talanta; citation_title=A ratiometric electrochemical sensor for the determination of exosomal glycoproteins; citation_author=Y An, R Li, F Zhang, P He; citation_volume=235; citation_publication_date=2021; citation_pages=122790; citation_doi=10.1016/j.talanta.2021.122790; citation_id=CR22 citation_journal_title=Chem Eng J; citation_title=Mathew. CelloZIFPaper: cellulose-ZIF hybrid paper for heavy metal removal and electrochemical sensing; citation_author=Hani Nasser Abdelhamid, Dimitrios Georgouvelas, Ulrica Edlund; citation_volume=446; citation_publication_date=2022; citation_pages=136614; citation_doi=10.1016/j.cej.2022.136614; citation_id=CR23 citation_journal_title=Antioxidants (Basel); citation_title=A review on electrochemical sensors and biosensors used in assessing antioxidant activity; citation_author=IG Munteanu, C Apetrei; citation_volume=11; citation_issue=3; citation_publication_date=2022; citation_pages=584; citation_doi=10.3390/antiox11030584; citation_id=CR24 citation_journal_title=Molecules; citation_title=Electrochemical impedance spectroscopy in the characterisation and application of modified electrodes for electrochemical sensors and biosensors; citation_author=CMA Brett; citation_volume=27; citation_issue=5; citation_publication_date=2022; citation_pages=1497; citation_doi=10.3390/molecules27051497; citation_id=CR25 citation_journal_title=Nanomaterials (Basel); citation_title=Gold nanomaterials-based electrochemical sensors and biosensors for phenolic antioxidants detection: recent advances; citation_author=R Petrucci, M Bortolami, P Matteo, A Curulli; citation_volume=12; citation_issue=6; citation_publication_date=2022; citation_pages=959; citation_doi=10.3390/nano12060959; citation_id=CR26 citation_journal_title=Small; citation_title=Enzyme-metal hybrid catalysts for chemoenzymatic reactions; citation_author=X Li, X Cao, J Xiong, J Ge; citation_volume=16; citation_issue=15; citation_publication_date=2020; citation_pages=e1902751; citation_doi=10.1002/smll.201902751; citation_id=CR27 citation_journal_title=Anal Chem; citation_title=DNA cascade reaction with high-efficiency target conversion for ultrasensitive electrochemiluminescence microRNA detection; citation_author=X Jiang, H Wang, Y Chai, H Li, W Shi, R Yuan; citation_volume=91; citation_issue=15; citation_publication_date=2019; citation_pages=10258-10265; citation_doi=10.1021/acs.analchem.9b02404; citation_id=CR28 citation_journal_title=Talanta; citation_title=Spatially localized amplification reaction with accelerated target conversion for sensitive microRNA detection; citation_author=M Qing, SL Chen, J Zhou, HQ Luo, NB Li; citation_volume=232; citation_publication_date=2021; citation_pages=122422; citation_doi=10.1016/j.talanta.2021.122422; citation_id=CR29 citation_journal_title=Biosens Bioelectron; citation_title=A sensitive electrochemiluminescence immunosensor based on luminophore capped Pd@Au core-shell nanoparticles as signal tracers and ferrocenyl compounds as signal enhancers; citation_author=Y Liu, H Wang, C Xiong, Y Yuan, Y Chai, R Yuan; citation_volume=81; citation_publication_date=2016; citation_pages=334-340; citation_doi=10.1016/j.bios.2016.03.014; citation_id=CR30 citation_journal_title=ACS Appl Mater Interfaces; citation_title=Recent progress in DNA hybridization chain reaction strategies for amplified biosensing; citation_author=H Chai, W Cheng, D Jin, P Miao; citation_volume=13; citation_issue=33; citation_publication_date=2021; citation_pages=38931-38946; citation_doi=10.1021/acsami.1c09000; citation_id=CR31 citation_journal_title=Adv Mater.; citation_title=Growth of Au nanoparticles on 2D metalloporphyrinic metal-organic framework nanosheets used as biomimetic catalysts for cascade reactions; citation_author=Y Huang, M Zhao, S Han, Z Lai, J Yang, C Tan, Q Ma, Q Lu, J Chen, X Zhang, Z Zhang, B Li, B Chen, Y Zong, H Zhang; citation_volume=29; citation_issue=32; citation_publication_date=2017; citation_pages=1700102; citation_doi=10.1002/adma.201700102; citation_id=CR32 citation_journal_title=Sens Actuators B Chem.; citation_title=A modification free hybridization biosensor for detection of DNA sequence based on Zr(IV) ion glue mediated the adsorption on Au–MPA SAM electrode; citation_author=RK Shervedani, S Pourbeyram; citation_volume=160; citation_issue=1; citation_publication_date=2011; citation_pages=145-153; citation_doi=10.1016/j.snb.2011.07.025; citation_id=CR33 citation_journal_title=Anal Chim Acta; citation_title=In situ formation of fluorescent polydopamine catalyzed by peroxidase-mimicking FeCo-LDH for pyrophosphate ion and pyrophosphatase activity detection; citation_author=X Xu, X Zou, S Wu, L Wang, X Niu, X Li, J Pan, H Zhao, M Lan; citation_volume=1053; citation_publication_date=2019; citation_pages=89-97; citation_doi=10.1016/j.aca.2018.12.006; citation_id=CR34 citation_journal_title=Sens Actuators B Chem.; citation_title=DNA-grafted hemin with preferable catalytic properties than G-quadruplex/hemin for fluorescent miRNA biosensing; citation_author=J Li, T Yuan, T Yang, L Xu, L Zhang, L Huang, W Cheng, S Ding; citation_volume=271; citation_publication_date=2018; citation_pages=239-246; citation_doi=10.1016/j.snb.2018.05.045; citation_id=CR35 citation_journal_title=Nanoscale; citation_title=Controllable drug release from nano-layered hollow carrier by non-human enzyme; citation_author=D Choi, J Heo, J Hong; citation_volume=10; citation_issue=38; citation_publication_date=2018; citation_pages=18228-18237; citation_doi=10.1039/C8NR05269G; citation_id=CR36 citation_journal_title=Anal Chem; citation_title=Electrocatalytic efficiency regulation between target-induced HRP-mimicking DNAzyme and GOx with low background for ultrasensitive detection of thrombin; citation_author=L Kong, D Wang, Y Chai, Y Yuan, R Yuan; citation_volume=91; citation_issue=15; citation_publication_date=2019; citation_pages=10289-10294; citation_doi=10.1021/acs.analchem.9b02498; citation_id=CR37 citation_journal_title=J Nanobiotechnol; citation_title=Surface plasmon resonance biosensor for exosome detection based on reformative tyramine signal amplification activated by molecular aptamer beacon; citation_author=W Chen, Z Li, W Cheng, T Wu, J Li, X Li, L Liu, H Bai, S Ding, X Li, X Yu; citation_volume=19; citation_issue=1; citation_publication_date=2021; citation_pages=450; citation_doi=10.1186/s12951-021-01210-x; citation_id=CR38 citation_journal_title=Nat Nanotechnol; citation_title=Enzymatic reactions in confined environments; citation_author=A Küchler, M Yoshimoto, S Luginbühl, F Mavelli, P Walde; citation_volume=11; citation_issue=5; citation_publication_date=2016; citation_pages=409-20; citation_doi=10.1038/nnano.2016.54; citation_id=CR39 citation_journal_title=Angew Chem Int Ed Engl; citation_title=Cascaded nanozyme system with high reaction selectivity by substrate screening and channeling in a microfluidic device; citation_author=Q Zhou, H Yang, X Chen, Y Xu, D Han, S Zhou, S Liu, Y Shen, Y Zhang; citation_volume=61; citation_issue=2; citation_publication_date=2022; citation_pages=e202112453; citation_doi=10.1002/anie.202112453; citation_id=CR40 citation_journal_title=Biosens Bioelectron; citation_title=A highly sensitive electrochemiluminescence immunosensor for h-FABP determination based on self-enhanced luminophore coupled with ultrathin 2D nickel metal-organic framework nanosheets; citation_author=X Gan, D Han, J Wang, P Liu, X Li, Q Zheng, Y Yan; citation_volume=171; citation_publication_date=2021; citation_pages=112735; citation_doi=10.1016/j.bios.2020.112735; citation_id=CR41 citation_journal_title=Nucleic Acids Res; citation_title=Zippered G-quadruplex/hemin DNAzyme: exceptional catalyst for universal bioanalytical applications; citation_author=J Li, H Wu, Y Yan, T Yuan, Y Shu, X Gao, L Zhang, S Li, S Ding, W Cheng; citation_volume=49; citation_issue=22; citation_publication_date=2021; citation_pages=13031-13044; citation_doi=10.1093/nar/gkab1178; citation_id=CR42 citation_journal_title=J Colloid Interface Sci; citation_title=Characterization of glucose oxidation by gold nanoparticles using nanoceria; citation_author=NJ Lang, B Liu, J Liu; citation_volume=428; citation_publication_date=2014; citation_pages=78-83; citation_doi=10.1016/j.jcis.2014.04.025; citation_id=CR43 citation_journal_title=Sensors (Basel); citation_title=Cu2O and Au/Cu; citation_author=YH Won, LA Stanciu; citation_volume=12; citation_issue=10; citation_publication_date=2012; citation_pages=13019-33; citation_doi=10.3390/s121013019; citation_id=CR44 citation_journal_title=Biosens Bioelectron; citation_title=Enhanced electrochemiluminescence of luminol based on Cu; citation_author=X Zhu, H Liu, Y Dai, X Wang, C Luo, Q Wei; citation_volume=151; citation_publication_date=2020; citation_pages=111970; citation_doi=10.1016/j.bios.2019.111970; citation_id=CR45 citation_journal_title=J Am Chem Soc; citation_title=Size- controlled synthesis of porphyrinic netal-organic framework and functionalization for targeted photodynamic therapy; citation_author=J Park, Q Jiang, D Feng, L Mao, HC Zhou; citation_volume=138; citation_issue=10; citation_publication_date=2016; citation_pages=3518-25; citation_doi=10.1021/jacs.6b00007; citation_id=CR46 citation_journal_title=Adv Sci (Weinh); citation_title=A nanomedicine fabricated from gold nanoparticles-decorated metal-organic framework for cascade chemo/chemodynamic cancer therapy; citation_author=Y Ding, H Xu, C Xu, Z Tong, S Zhang, Y Bai, Y Chen, Q Xu, L Zhou, H Ding, Z Sun, S Yan, Z Mao, W Wang; citation_volume=7; citation_issue=17; citation_publication_date=2020; citation_pages=2001060; citation_doi=10.1002/advs.202001060; citation_id=CR47 citation_journal_title=J Am Chem Soc; citation_title=Size-controlled synthesis of porphyrinic metal-organic framework and functionalization for targeted photodynamic therapy; citation_author=J Park, Q Jiang, D Feng, L Mao, HC Zhou; citation_volume=138; citation_issue=10; citation_publication_date=2016; citation_pages=3518-25; citation_doi=10.1021/jacs.6b00007; citation_id=CR48 citation_journal_title=Chem Asian J; citation_title=Vancomycin-functionalized porphyrinic metal-organic framework PCN-224 with enhanced antibacterial activity against Staphylococcus aureus; citation_author=LJ Chen, YY Liu, X Zhao, XP Yan; citation_volume=16; citation_issue=15; citation_publication_date=2021; citation_pages=2022-2026; citation_doi=10.1002/asia.202100546; citation_id=CR49 citation_journal_title=J Am Chem Soc; citation_title=Construction of ultrastable porphyrin Zr metal-organic frameworks through linker elimination; citation_author=D Feng, WC Chung, Z Wei, ZY Gu, HL Jiang, YP Chen, DJ Darensbourg, HC Zhou; citation_volume=135; citation_issue=45; citation_publication_date=2013; citation_pages=17105-10; citation_doi=10.1021/ja408084j; citation_id=CR50 citation_journal_title=Sens Actuators B Chem; citation_title=Dynamic DNA self-assembly activated hemin-mimetic enzyme system for versatilefluorescent biosensing; citation_author=J Li, Y Xiang, L Zhang, L Huang, J Teng, S Ding, W Cheng; citation_volume=288; citation_publication_date=2019; citation_pages=757-762; citation_doi=10.1016/j.snb.2019.03.058; citation_id=CR51