Dali server: conservation mapping in 3D

Hasegawa, 2009, Advances and pitfalls of protein structural alignment, Curr. Opin. Struct. Biol., 19, 381, 10.1016/j.sbi.2009.04.003

Holm, 2008, Searching protein structure databases with DaliLite v.3, Bioinformatics, 24, 2780, 10.1093/bioinformatics/btn507

Veeramalai, 2008, TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ string model, BMC Bioinformatics, 9, 10.1186/1471-2105-9-358

Kawabata, 2000, Protein tertiary structure comparison using the Markov transition model of evolution, Proteins, 41, 108, 10.1002/1097-0134(20001001)41:1<108::AID-PROT130>3.0.CO;2-S

Krissinel, 2004, Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions, Acta Cryst., D60, 2256

Gibrat, 1996, Surprising similarities in structure comparison, Curr. Opin. Struct. Biol., 6, 377, 10.1016/S0959-440X(96)80058-3

Leslin, 2007, TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method, Nucleic Acids Res., 35, D317, 10.1093/nar/gkl809

Holm, 1995, Dali: a network tool for protein structure comparison, Trends Biochem. Sci., 20, 478, 10.1016/S0968-0004(00)89105-7

Lichtarge, 2002, Evolutionary predictions of binding surfaces and interactions, Curr. Opin. Struct. Biol., 12, 21, 10.1016/S0959-440X(02)00284-1

Landau, 2005, ConSurf: the projection of evolutionary conservation scores of residues on protein structures, Nucleic Acids Res., 33, W299, 10.1093/nar/gki370

Laskowski, 2005, ProFunc: a server for predicting protein function from 3D structure, Nucleic Acids Res., 33, W89, 10.1093/nar/gki414

Holm, 1996, Mapping the protein universe, Science, 273, 595, 10.1126/science.273.5275.595

Andreeva, 2007, Data growth and its impact on the SCOP database: new developments, Nucleic Acids Res., 36, D419, 10.1093/nar/gkm993

Sam, 2006, ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification, BMC Bioinformatics, 7, 206, 10.1186/1471-2105-7-206

Lindahl, 2000, Identification of related proteins on family, superfamily and fold level, J. Mol. Biol., 295, 613, 10.1006/jmbi.1999.3377

Rosado, 2007, A common fold mediates vertebrate defense and bacterial attack, Science, 317, 1548, 10.1126/science.1144706

Hadders, 2007, Structure of C8alpha-MACPF reveals mechanism of membrane attack in complement immune defense, Science, 317, 1552, 10.1126/science.1147103

Lukoyanova, 2008, Friend or foe: the same fold for attack and defense, Trends Immunol., 29, 51, 10.1016/j.it.2007.11.003