DNA Microarray Experiments: Biological and Technological Aspects

Alberts, 1994, Molecular Biology of the Cell

Bartosiewiez, 2000, Development of a toxicological gene array and quantitative assessment of this technology, Archives of Biochemistry and Biophysics, 376, 66, 10.1006/abbi.2000.1700

Chen, 1997, Ratio-based decisions and the quantitative analysis of cDNA microarray images, Journal of Biomedical Optics, 2, 364, 10.1117/12.281504

DeRisi, 1999, The MGuide: A Complete Guide to Building Your Own Microarrayer

Duggan, 1999, Expression profiling using cDNA micro-arrays, Nature Genetics, 21, 10, 10.1038/4434

Efron, 2001, Empirical Bayes analysis of a microarray experiment, Journal of the American Statistical Association, 96, 1151, 10.1198/016214501753382129

Griffiths, 2000, An Introduction to Genetic Analysis

Haab, 2001, Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions, Genome Biology, 2, 0004.1, 10.1186/gb-2001-2-2-research0004

Ideker, 2000, Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data, Journal of Computational Biology, 6, 805, 10.1089/10665270050514945

Kahn, 1999, Expression profiling in cancer using cDNA microarrays, Electrophoresis, 20, 223, 10.1002/(SICI)1522-2683(19990201)20:2<223::AID-ELPS223>3.0.CO;2-A

Kerr, 2001a, Experimental design for gene expression microarrays, Biostatistics, 2, 183, 10.1093/biostatistics/2.2.183

Kerr, 2001b, Statistical design and analysis of gene expression microarrays, Genetical Research, 77, 123, 10.1017/S0016672301005055

Lander, 2000, Journey to the center of biology, Science, 287, 1777, 10.1126/science.287.5459.1777

Lee, 2000, Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridization, Proceedings of the National Academy of Sciences, USA, 97, 9834, 10.1073/pnas.97.18.9834

Li, 2001a, Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection, Proceedings of the National Academy of Sciences, USA, 98, 31, 10.1073/pnas.011404098

Li, 2001b, Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application, Genome Biology, 2, 1

Lipshutz, 1999, High density synthetic oligonucleotide arrays, Nature Genetics, 21, 20, 10.1038/4447

Lockhart, 1996, Expression of monitoring by hybridization to high-density oligonucleotide arrays, Nature Biotechnology, 14, 1675, 10.1038/nbt1296-1675

May, 2001, Complete genomic sequence of Pasteurella multocida, Pm70, Proceedings of the National Academy of Sciences, USA, 98, 3460, 10.1073/pnas.051634598

Newton, 2001, On differential variability of the expression ratios: Improving statistical inference about gene expression changes from microarray data, Journal of Computational Biology, 8, 37, 10.1089/106652701300099074

Ramakrishnan, 2002, An assessment of Motorola CodeLinkTM microarray performance for gene expression profiling applications, Nucleic Acids Research, 30, e30, 10.1093/nar/30.7.e30

Rocke, 2001, A model for measurement error for gene expression arrays, Journal of Computational Biology, 8, 557, 10.1089/106652701753307485

Schadt, 2000, Analyzing high-density oligonucleotide gene expression array data, Journal of Cellular Biochemistry, 80, 192, 10.1002/1097-4644(20010201)80:2<192::AID-JCB50>3.0.CO;2-W

Schena, 1995, Quantitative monitoring of gene expression patterns with a complementary DNA microarray, Science, 270, 467, 10.1126/science.270.5235.467

Schermer, 1999, DNA Microarrays: A Practical Approach, 17, 10.1093/oso/9780199637775.003.0002

Schummer, 1999, Comparative hybridization of an array of 21 500 ovarian cDNA for the discovery of genes overexpressed in ovarian carcinomas, Gene, 238, 375, 10.1016/S0378-1119(99)00342-X

Stears, 2000, A novel, sensitive detection system for high-density microarrays using dendrimer technology, Physiological Genomics, 3, 93, 10.1152/physiolgenomics.2000.3.2.93

Tseng, 2001, Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects, Nucleic Acids Research, 29, 2549, 10.1093/nar/29.12.2549

Tusher, 2001, Significance analysis of microarrays applied to ionizing radiation response, Proceedings of the National Academy of Sciences, USA, 98, 5116, 10.1073/pnas.091062498

Watson, 1953, Genetical implications of the structure of deoxyribonucleic acid, Nature, 171, 964, 10.1038/171964b0

Wodicka, 1997, Genome-wide expression monitoring in Saccharomyces cerevisiae, Nature Biotechnology, 15, 1359, 10.1038/nbt1297-1359

Wong, 2001, Preparation of labeled cDNA without bias using FairPlay microarray labeling kit, Strategies Newsletter, 14, 62

Yang, 2001, Microarrays: Optical Technologies and Informatics, 141, 10.1117/12.427982

Yang, 2002, Comparison of methods for image analysis on cDNA microarray data, Journal of Computational and Graphical Statistics, 11, 108, 10.1198/106186002317375640