DIA-based proteome reveals the involvement of cuticular proteins and lipids in the wing structure construction in the silkworm

Journal of Proteomics - Tập 238 - Trang 104155 - 2021
Chunyan Fang1, Zhanfeng Ye1, Tingting Gai1, Kunpeng Lu1, Fangyin Dai1, Cheng Lu1, Xiaoling Tong1
1State Key Laboratory of Silkworm Genome Biology, Key Laboratory of Sericultural Biology and Genetic Breeding, Ministry of Agriculture and Rural Affairs, Southwest University, Chongqing 400715, China

Tài liệu tham khảo

Zera, 1997, Physiology and ecology of dispersal polymorphism in insects, Annu. Rev. Entomol., 42, 10.1146/annurev.ento.42.1.207 McCulloch, 2009, Do insects lose flight before they lose their wings? Population genetic structure in subalpine stoneflies, Mol. Ecol., 10.1111/j.1365-294X.2009.04337.x Xia, 2004, A draft sequence for the genome of the domesticated silkworm (Bombyx mori), Science Stossberg, 1938, Die zellvorgänge bei der entwicklung der flügelschuppen von ephestia kühniella Z, Zeitschrift Für Morphol. Und Ökologie Der Tiere, 10.1007/BF00408757 Von Henke, 1952, Differentielle Zellteilungen und Polyploidie bei der Schuppenbildung der Mehlmotte Ephestia kühniella Z, Zeitschrift Fur Naturforsch. B. J. Chem. Sci. Shahin, 2016, Cuticular protein and transcription factor genes expressed during prepupal-pupal transition and by ecdysone pulse treatment in wing discs of Bombyx mori, Insect Mol Biol., 25, 138, 10.1111/imb.12207 Shahin, 2018, Expression profiles of cuticular protein genes in wing tissues during pupal to adult stages and the deduced adult cuticular structure of Bombyx mori, Gene, 10.1016/j.gene.2017.11.076 Jasrapuria, 2012, Gene families of cuticular proteins analogous to peritrophins (CPAPs) in Tribolium castaneum have diverse functions, PLoS One, 10.1371/journal.pone.0049844 Rebers, 1988, Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes, J. Mol. Biol., 10.1016/0022-2836(88)90009-5 Arakane, 2012, Formation of rigid, non-flight forewings (Elytra) of a beetle requires two major cuticular proteins, PLoS Genet., 10.1371/journal.pgen.1002682 Noh, 2014, Two major cuticular proteins are required for assembly of horizontal laminae and vertical pore canals in rigid cuticle of Tribolium castaneum, Insect Biochem. Mol. Biol., 10.1016/j.ibmb.2014.07.005 Zhao, 2019, The wing-specific cuticular protein LmACP7 is essential for normal wing morphogenesis in the migratory locust, Insect Biochem. Mol. Biol., 10.1016/j.ibmb.2019.103206 Qiao, 2014, Mutation of a cuticular protein, BmorCPR2, alters larval body shape and adaptability in silkworm, Bombyx mori, Genetics, 10.1534/genetics.113.158766 Charles, 2010, The regulation of expression of insect cuticle protein genes, Insect Biochem. Mol. Biol., 10.1016/j.ibmb.2009.12.005 Becker, 2011, Epidemiology of multiple myeloma, Recent Results Cancer Res., 10.1007/978-3-540-85772-3_2 Deng, 2011, Transcription factors BmPOUM2 and BmβFTZ-F1 are involved in regulation of the expression of the wing cuticle protein gene BmWCP4 in the silkworm, Bombyx mori, Insect Mol. Biol., 10.1111/j.1365-2583.2010.01041.x Wigglesworth, 1975, Incorporation of lipid into the epicuticle of Rhodnius (Hemiptera), J. Cell Sci., 19, 459, 10.1242/jcs.19.3.459 Wigglesworth, 1985, The transfer of lipid in insects from the epidermal cells to the cuticle, Tissue Cell, 10.1016/0040-8166(85)90092-8 Moussian, 2013, The apical plasma membrane of chitin-synthesizing epithelia, Insect Sci., 10.1111/j.1744-7917.2012.01549.x Lockey, 1987, Fatalities from immunotherapy (IT) and skin testing (ST), J. Allergy Clin. Immunol., 10.1016/S0091-6749(87)80164-1 Lockey, 1988, Lipids of the insect cuticle: origin, composition and function, Comp. Biochem. Physiol. B. Biochem., 10.1016/0305-0491(88)90305-7 Ou, 2014, Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis, BMC Genomics, 10.1186/1471-2164-15-820 Zhang, 2017, Comparative transcriptomes analysis of the wing disc between two silkworm strains with different size of wings, PLoS One Wang, 2008, Label-free mass spectrometry-based protein quantification technologies in proteomic analysis, Brief. Funct. Genomics Proteomics, 10.1093/bfgp/eln031 Sandin, 2014, Data processing methods and quality control strategies for label-free LC-MS protein quantification, Biochim. Biophys. Acta, Proteins Proteomics, 10.1016/j.bbapap.2013.03.026 Arike, 2014, Spectral counting label-free proteomics, Methods Mol. Biol., 10.1007/978-1-4939-0685-7_14 Weisser, 2013, An automated pipeline for high-throughput label-free quantitative proteomics, J. Proteome Res., 10.1021/pr300992u Navarro, 2016, A multicenter study benchmarks software tools for label-free proteome quantification, Nat. Biotechnol., 10.1038/nbt.3685 Tate, 2013, Label-free quantitative proteomics trends for protein-protein interactions, J. Proteome, 10.1016/j.jprot.2012.10.027 Clough, 2009, Protein quantification in label-free LC-MS experiments, J. Proteome Res., 10.1021/pr900610q Lavallée-Adam, 2014, PSEA-quant: a protein set enrichment analysis on label-free and label-based protein quantification data, J. Proteome Res., 10.1021/pr500473n Grossmann, 2010, Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods, J. Proteome, 10.1016/j.jprot.2010.05.011 Arike, 2012, Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli, J. Proteome, 10.1016/j.jprot.2012.06.020 Engel, 2004, New light shed on the oldest insect, Nature, 10.1038/nature02291 Goldsmith, 2013, Bombyx mori Chen, 2013, Antennapedia is involved in the development of thoracic legs and segmentation in the silkworm, Bombyx mori, Heredity, 111, 182, 10.1038/hdy.2013.36 Wigglesworth, 1972, A comparative assessment of eye protective devices and a proposed system of acceptance testing and grading, Optom. Vis. Sci., 10.1097/00006324-197204000-00001 Andersen, 2000, Studies on proteins in post-ecdysial nymphal cuticle of locust, Locusta migratoria, and cockroach, Blaberus craniifer, Insect Biochem. Mol. Biol., 10.1016/S0965-1748(00)00029-1 Andersen, 2002, Characteristic properties of proteins from pre-ecdysial cuticle of larvae and pupae of the mealworm Tenebrio molitor, Insect Biochem. Mol. Biol., 10.1016/S0965-1748(02)00045-0 Futahashi, 2008, Genome-wide identification of cuticular protein genes in the silkworm, Bombyx mori, Insect Biochem. Mol. Biol., 10.1016/j.ibmb.2008.05.007 Michael, 1961, Pore canals and related structures in insect cuticle, J. Biophys. Biochem. Cytol., 10, 589, 10.1083/jcb.10.4.589 Arrese, 2010, Insect fat body: energy, metabolism, and regulation, Annu. Rev. Entomol., 10.1146/annurev-ento-112408-085356