Coupling of folding and binding for unstructured proteins
Tóm tắt
Từ khóa
Tài liệu tham khảo
Wright, 1999, Intrinsically unstructured proteins: re-assessing the protein structure–function paradigm, J Mol Biol, 293, 321, 10.1006/jmbi.1999.3110
Dunker, 2001, Intrinsically disordered protein, J Mol Graph Model, 19, 26, 10.1016/S1093-3263(00)00138-8
Dunker, 2001, The protein trinity-linking function and disorder, Nat Biotechnol, 19, 805, 10.1038/nbt0901-805
Namba, 2001, Roles of partly unfolded conformations in macromolecular self-assembly, Genes Cells, 6, 1, 10.1046/j.1365-2443.2001.00384.x
Crivici, 1995, Molecular and structural basis of target recognition by calmodulin, Annu Rev Biophys Biomol Struct, 24, 85, 10.1146/annurev.bb.24.060195.000505
Spolar, 1994, Coupling of local folding to site-specific binding of proteins to DNA, Science, 263, 777, 10.1126/science.8303294
Love, 1995, Structural basis for DNA bending by the architectural transcription factor LEF-1, Nature, 376, 791, 10.1038/376791a0
Bowers, 1999, A folding transition and novel zinc finger accessory domain in the transcription factor ADR1, Nat Struct Biol, 6, 478, 10.1038/8283
Young, 2000, An accessory DNA binding motif in the zinc finger protein Adr1 assists stable binding to DNA and can be replaced by a third finger, Biochemistry, 39, 567, 10.1021/bi992049r
Holmbeck, 1998, DNA-induced conformational changes are the basis for cooperative dimerization by the DNA binding domain of the retinoid X receptor, J Mol Biol, 284, 533, 10.1006/jmbi.1998.2207
van Tilborg, 2000, Changes in dynamical behavior of the retinoid X receptor DNA-binding domain upon binding to a 14 base-pair DNA half site, Biochemistry, 39, 8747, 10.1021/bi991550g
Laity, 2000, DNA-induced α-helix capping in conserved linker sequences is a determinant of binding affinity in Cys2-His2 zinc fingers, J Mol Biol, 295, 719, 10.1006/jmbi.1999.3406
Laity, 2000, Molecular basis for modulation of biological function by alternate splicing of the Wilms’ tumor suppressor protein, Proc Natl Acad Sci USA, 97, 11932, 10.1073/pnas.97.22.11932
Young, 2001, Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation, Cell, 105, 115, 10.1016/S0092-8674(01)00301-4
Kimzey, 1999, Identification of a human T-cell leukemia virus type I tax peptide in contact with DNA, J Biol Chem, 274, 34226, 10.1074/jbc.274.48.34226
Twigg, 2001, Disordered to ordered folding in the regulation of diphtheria toxin repressor activity, Proc Natl Acad Sci USA, 98, 11259, 10.1073/pnas.191354798
Weaver, 2001, Corepressor-induced organization and assembly of the biotin repressor: a model for allosteric activation of a transcriptional regulator, Proc Natl Acad Sci USA, 98, 6045, 10.1073/pnas.111128198
Leulliot, 2001, Current topics in RNA–protein recognition: control of specificity and biological function through induced fit and conformational capture, Biochemistry, 40, 7947, 10.1021/bi010680y
Williamson, 2001, Proteins that bind RNA and the labs who love them, Nat Struct Biol, 8, 390, 10.1038/87540
Agalarov, 2000, Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain, Science, 288, 107, 10.1126/science.288.5463.107
Mogridge, 1998, Independent ligand-induced folding of the RNA-binding domain and two functionally distinct antitermination regions in the phage lambda N protein, Mol Cell, 1, 265, 10.1016/S1097-2765(00)80027-1
Henkels, 2001, Linked folding and anion binding of the Bacillus subtilis ribonuclease P protein, Biochemistry, 40, 2777, 10.1021/bi002078y
Bouvet, 2001, Recognition of pre-formed and flexible elements of an RNA stem-loop by nucleolin, J Mol Biol, 309, 763, 10.1006/jmbi.2001.4691
Allain, 2000, Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin, EMBO J, 19, 6870, 10.1093/emboj/19.24.6870
Radhakrishnan, 1997, Solution structure of the KIX domain of CBP bound to the transactivation domain of CREB: amodel for activator–coactivator interactions, Cell, 91, 741, 10.1016/S0092-8674(00)80463-8
Kussie, 1996, Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain, Science, 274, 948, 10.1126/science.274.5289.948
Uesugi, 1997, Induced α-helix in the VP16 activation domain upon binding to a human TAF, Science, 277, 1310, 10.1126/science.277.5330.1310
Ayed, 2001, Latent and active p53 are identical in conformation, Nat Struct Biol, 8, 756, 10.1038/nsb0901-756
Grossmann, 2001, Molecular shapes of transcription factors TFIIB and VP16 in solution: implications for recognition, Biochemistry, 40, 6267, 10.1021/bi0028946
Botuyan, 1999, Binding of elongin A or a von Hippel–Lindau peptide stabilizes the structure of yeast elongin C, Proc Natl Acad Sci USA, 96, 9033, 10.1073/pnas.96.16.9033
Buchberger, 2000, Biophysical characterization of elongin C from Saccharomyces cerevisiae, Biochemistry, 39, 12512, 10.1021/bi005115u
Botuyan, 2001, Solution structure and dynamics of yeast elongin C in complex with a von Hippel–Lindau peptide, J Mol Biol, 312, 177, 10.1006/jmbi.2001.4938
He, 2001, Allosteric activation of a spring-loaded natriuretic peptide receptor dimer by hormone, Science, 293, 1657, 10.1126/science.1062246
Fairbrother, 1994, Solution conformation of an atrial natriuretic peptide variant selective for the type A receptor, Biochemistry, 33, 8897, 10.1021/bi00196a006
Abdul-Manan, 1999, Structure of Cdc42 in complex with the GTPase-binding domain of the ‘Wiskott–Aldrich syndrome’ protein, Nature, 399, 379, 10.1038/20726
Kim, 2000, Autoinhibition and activation mechanisms of the Wiskott–Aldrich syndrome protein, Nature, 404, 151, 10.1038/35010088
Lei, 2000, Structure of PAK1 in an autoinhibited conformation reveals a multistage activation switch, Cell, 102, 387, 10.1016/S0092-8674(00)00043-X
Huber, 2001, The cadherin cytoplasmic domain is unstructured in the absence of β-catenin — a possible mechanism for regulating cadherin turnover, J Biol Chem, 276, 12301, 10.1074/jbc.M010377200
Huber, 2001, The structure of the β-catenin/E-cadherin complex and the molecular basis of diverse ligand recognition by β-catenin, Cell, 105, 391, 10.1016/S0092-8674(01)00330-0
Graham, 2000, Crystal structure of a beta-catenin/Tcf complex, Cell, 103, 885, 10.1016/S0092-8674(00)00192-6
Zhou, 2001, Solution structure of DFF40 and DFF45 N-terminal domain complex and mutual chaperone activity of DFF40 and DFF45, Proc Natl Acad Sci USA, 98, 6051, 10.1073/pnas.111145098
Aivazian, 2000, Phosphorylation of T cell receptor zeta is regulated by a lipid dependent folding transition, Nat Struct Biol, 7, 1023, 10.1038/80930
Pfander, 1999, Structure of the active domain of the herpes simplex virus protein ICP47 in water/sodium dodecyl sulfate solution determined by nuclear magnetic resonance spectroscopy, Biochemistry, 38, 13692, 10.1021/bi9909647
Song, 2001, Molten-globule structure and membrane binding of the N-terminal protease-resistant domain (63–193) of the steroidogenic acute regulatory protein (StAR), Biochem J, 356, 151, 10.1042/0264-6021:3560151
Weikl, 1999, An unstructured C-terminal region of the Hsp90 co-chaperone p23 is important for its chaperone function, J Mol Biol, 293, 685, 10.1006/jmbi.1999.3172
Richardson, 2001, The importance of a mobile loop in regulating chaperonin/co-chaperonin interaction: humans versus Escherichia coli, J Biol Chem, 276, 4981, 10.1074/jbc.M008628200
Zhu, 2001, The quorum-sensing transcriptional regulator TraR requires its cognate signaling ligand for protein folding, protease resistance, and dimerization, Proc Natl Acad Sci USA, 98, 1507, 10.1073/pnas.98.4.1507
Lee, 2001, PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation, J Biol Chem, 276, 20821, 10.1074/jbc.C100106200
Lee, 2001, Folding and signaling share the same pathway in a photoreceptor, Proc Natl Acad Sci USA, 98, 9062, 10.1073/pnas.111153598
Genick, 1997, Structure of a protein photocycle intermediate by millisecond time-resolved crystallography, Science, 275, 1471, 10.1126/science.275.5305.1471
Craven, 2000, Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies, Biochemistry, 39, 14392, 10.1021/bi001628p
Garner, 1998, Predicting disordered regions from amino acid sequence: common themes despite differing structural characterization, Genome Informatics, 9, 201
Uversky, 2000, Why are ‘natively unfolded’ proteins unstructured under physiologic conditions?, Proteins, 41, 415, 10.1002/1097-0134(20001115)41:3<415::AID-PROT130>3.0.CO;2-7
Lee, 2001, Expression of the Oct-1 transcription factor and characterization of its interactions with the Bob1 coactivator, Biochemistry, 40, 6580, 10.1021/bi010095x
Salghetti, 2001, Regulation of transcriptional activation domain function by ubiquitin, Science, 293, 1651, 10.1126/science.1062079
Shoemaker, 2000, Speeding molecular recognition by using the folding funnel: the fly-casting mechanism, Proc Natl Acad Sci USA, 97, 8868, 10.1073/pnas.160259697
Koradi, 1996, MOLMOL: a program for display and analysis of macromolecular structures, J Mol Graphics, 14, 51, 10.1016/0263-7855(96)00009-4
Graham, 2001, Tcf4 can specifically recognize β-catenin using alternative conformations, Nat Struct Biol, 8, 1048, 10.1038/nsb718