Conversion of acetate and glyoxylate to fumarate by a cell-free synthetic enzymatic biosystem

Synthetic and Systems Biotechnology - Tập 8 - Trang 235-241 - 2023
Congli Hou1,2,3, Linyue Tian2, Guoli Lian2, Li-Hai Fan1,3, Zheng-Jun Li2
1College of Chemical Engineering, Fujian Engineering Research Center of Advanced Manufacturing Technology for Fine Chemicals, Fuzhou University, Fuzhou, 350108, People's Republic of China
2College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, People's Republic of China
3Qingyuan Innovation Laboratory, Quanzhou, 362801, People's Republic of China

Tài liệu tham khảo

Guo, 2020, Current advances on biological production of fumaric acid, Biochem Eng J, 153, 10.1016/j.bej.2019.107397 Roa Engel, 2008, Fumaric acid production by fermentation, Appl Microbiol Biotechnol, 78, 379, 10.1007/s00253-007-1341-x Wei, 2023, The ornithine-urea cycle involves fumaric acid biosynthesis in Aureobasidium pullulans var. aubasidani, a green and eco-friendly process for fumaric acid production, Synth Syst Biotechnol, 8, 33, 10.1016/j.synbio.2022.10.004 Papadaki, 2017, Biotechnological production of fumaric acid: the effect of morphology of Rhizopus arrhizus NRRL 2582, Fermentation, 3, 33, 10.3390/fermentation3030033 Gao, 2022, Advances in microbial engineering for the production of value-added products in a biorefinery, Syst Microbiol Biomanuf, 1 Chen, 2019, Kinetic Study on the Preparation of fumaric acid from maleic acid by batch noncatalytic isomerization, ACS Omega, 4, 8274, 10.1021/acsomega.9b00316 Gao, 2018, Study on the isomerization of maleic acid to fumaric acid without catalyst, Bull Kor Chem Soc, 39, 920, 10.1002/bkcs.11499 Kato, 1995, Maleate cis-trans isomerase from Arthrobacter sp. TPU 5446, J Ferment Bioeng, 80, 610, 10.1016/0922-338X(96)87741-5 Liu, 2015, Production of fumaric acid from L-malic acid by solvent engineering using a recombinant thermostable fumarase from Thermus thermophilus HB8, Appl Biochem Biotechnol, 175, 2823, 10.1007/s12010-014-1468-z Ichikawa, 2003, Improvement of production rate and yield of fumaric acid from maleic acid by heat treatment of Pseudomonas alcaligenes strain XD-1, Biochem Eng J, 13, 7, 10.1016/S1369-703X(02)00080-3 Sebastian, 2019, Bioproduction of fumaric acid: an insight into microbial strain improvement strategies, Crit Rev Biotechnol, 39, 817, 10.1080/07388551.2019.1620677 Lee, 2019, A comprehensive metabolic map for production of bio-based chemicals, Nat Catal, 2, 18, 10.1038/s41929-018-0212-4 Fu, 2010, Enhancement of fumaric acid production by Rhizopus oryzae using a two-stage dissolved oxygen control strategy, Appl Biochem Biotechnol, 162, 1031, 10.1007/s12010-009-8831-5 Liu, 2018, Genetic manipulation of Escherichia coli central carbon metabolism for efficient production of fumaric acid, Bioresour Technol, 270, 96, 10.1016/j.biortech.2018.08.024 Li, 2014, Engineering Escherichia coli for fumaric acid production from glycerol, Bioresour Technol, 174, 81, 10.1016/j.biortech.2014.09.147 Chen, 2016, Modular optimization of multi-gene pathways for fumarate production, Metab Eng, 33, 76, 10.1016/j.ymben.2015.07.007 DeVries, 1967, DNA-directed peptide synthesis. II. The synthesis of the alpha-fragment of the enzyme beta-galactosidase, Proc Natl Acad Sci USA, 57, 1010, 10.1073/pnas.57.4.1010 Nirenberg, 1961, The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides, Proc Natl Acad Sci USA, 47, 1588, 10.1073/pnas.47.10.1588 Zhang, 2010, Production of biocommodities and bioelectricity by cell‐free synthetic enzymatic pathway biotransformations: challenges and opportunities, Biotechnol Bioeng, 105, 663 Bergquist, 2020, Cell-free biocatalysis for the production of platform chemicals, Front Energy Res, 8, 193, 10.3389/fenrg.2020.00193 Guterl, 2012, Cell‐free metabolic engineering: production of chemicals by minimized reaction cascades, ChemSusChem, 5, 2165, 10.1002/cssc.201200365 Swartz, 2012, Transforming biochemical engineering with cell‐free biology, AIChE J, 58, 5, 10.1002/aic.13701 Rollin, 2015, High-yield hydrogen production from biomass by in vitro metabolic engineering: mixed sugars coutilization and kinetic modeling, Proc Natl Acad Sci USA, 112, 4964, 10.1073/pnas.1417719112 Kay, 2015, Lysate of engineered Escherichia coli supports high-level conversion of glucose to 2,3-butanediol, Metab Eng, 32, 133, 10.1016/j.ymben.2015.09.015 Xie, 2018, Conversion of D-glucose to L-lactate via pyruvate by an optimized cell-free enzymatic biosystem containing minimized reactions, Synth Syst Biotechnol, 3, 204, 10.1016/j.synbio.2018.05.003 Li, 2017, Enzymatic cascades for efficient biotransformation of racemic lactate derived from corn steep water, ACS Sustainable Chem Eng, 5, 3456, 10.1021/acssuschemeng.7b00136 Liu, 2017, In vitro reconstitution and optimization of the entire pathway to convert glucose into fatty acid, ACS Synth Biol, 6, 701, 10.1021/acssynbio.6b00348 Cai, 2021, Cell-free chemoenzymatic starch synthesis from carbon dioxide, Science, 373, 1523, 10.1126/science.abh4049 Brown, 1977, The enzymic interconversion of acetate and acetyl-coenzyme A in Escherichia coli, Microbiology, 102, 327 Yasuda, 2007, Analyses of the acetate-producing pathways in Corynebacterium glutamicum under oxygen-deprived conditions, Appl Microbiol Biotechnol, 77, 853, 10.1007/s00253-007-1199-y Smith, 2003, Biochemical and structural studies of malate synthase from Mycobacterium tuberculosis, J Biol Chem, 278, 1735, 10.1074/jbc.M209248200 Ueda, 1991, Purification and characterization of two types of fumarase from Escherichia coli, J Biochem, 109, 728, 10.1093/oxfordjournals.jbchem.a123448 Alberty, 2006, Biochemical thermodynamics: applications of Mathematica, Methods Biochem Anal, 48, 1 Tseng, 2001, Oxygen-and growth rate-dependent regulation of Escherichia coli fumarase (FumA, FumB, and FumC) activity, J Bacteriol, 183, 461, 10.1128/JB.183.2.461-467.2001 Molina, 1994, Molecular characterization of Escherichia coli malate synthase G: differentiation with the malate synthase A isoenzyme, Eur J Biochem, 224, 541, 10.1111/j.1432-1033.1994.00541.x Cernia, 1996, Study of fumarase activity in non-conventional media. Part I, J Mol Catal B Enzym, 1, 81, 10.1016/1381-1177(95)00276-6 Liu, 2020, Recent advances in nano-carrier immobilized enzymes and their applications, Process Biochem, 92, 464, 10.1016/j.procbio.2020.02.005 Woods, 1988, Two biochemically distinct classes of fumarase in Escherichia coli, Biochim Biophys Acta, 954, 14, 10.1016/0167-4838(88)90050-7 Jang, 2022, Applications of artificial intelligence to enzyme and pathway design for metabolic engineering, Curr Opin Biotechnol, 73, 101, 10.1016/j.copbio.2021.07.024 Wu, 2019, Machine learning-assisted directed protein evolution with combinatorial libraries, Proc Natl Acad Sci USA, 116, 8852, 10.1073/pnas.1901979116 Su, 2014, Identification of a novel fumarase C from Streptomyces lividans TK54 as a good candidate for l-malate production, Mol Biol Rep, 41, 497, 10.1007/s11033-013-2885-8 Cui, 2021, Characterization of polyphosphate kinases for the synthesis of GSH with ATP regeneration from AMP, Enzym Microb Technol, 149, 10.1016/j.enzmictec.2021.109853 Tavanti, 2021, ATP regeneration by a single polyphosphate kinase powers multigram-scale aldehyde synthesis in vitro, Green Chem, 23, 828, 10.1039/D0GC03830J Cheng, 2018, Biological acetate production from carbon dioxide by Acetobacterium woodii and Clostridium ljungdahlii: the effect of cell immobilization, Bioresour Technol, 262, 229, 10.1016/j.biortech.2018.04.069 Liu, 2015, Efficient electrochemical reduction of carbon dioxide to acetate on nitrogen-doped nanodiamond, J Am Chem Soc, 137, 11631, 10.1021/jacs.5b02975 Yang, 2021, Exploring the oxygenase function of Form II Rubisco for production of glycolate from CO2, Amb Express, 11, 65, 10.1186/s13568-021-01224-6 Li, 2018, Metabolic engineering of Escherichia coli for the production of glyoxylate from xylose, Biochem Eng J, 129, 113, 10.1016/j.bej.2017.11.002