Contribution to rust flora in China I, tremendous diversity from natural reserves and parks

Aime MC (2006) Toward resolving family-level relationships in rust fungi (Uredinales). Mycoscience 47:112–122 Aime MC, McTaggart AR (2021) A higher-rank classification for rust fungi, with notes on genera. Fungal Syst Evol 7:21–47 Aime MC, Matheny PB, Henk DA, Frieders EM, Nilsson RH, Piepenbring M, McLaughlin DJ, Szabo LJ, Begerow D, Sampaio JP, Bauer R, Weiß M, Oberwinkler F, Hibbett D (2006) An overview of the higher-level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98:896–905 Aime MC, Castlebury LA, Abbasi M, Begerow D, Berndt R, Kirschner R, Marvanová L, Ono Y, Padamsee M, Scholler M, Thines M, Rossman AY (2018) Competing sexual and asexual generic names in Pucciniomycotina and Ustilaginomycotina (Basidiomycota) and recommendations for use. IMA Fungus 9:75–89 Anikster Y, Szabo LJ, Eilam T, Manisterski J, Koike ST, Bushnell WR (2004) Morphology, life cycle biology, and DNA sequence analysis of rust fungi on garlic and chives from California. Phytopathology 94:569–577 Arthur JC (1934) Manual of the rusts in United States and Canada. Purdue Research Foundation, Lafayette Azbukina Z (1972) Rust fungi of Far East Lec. Komarovianae (Komarov Read.). Vladivost 19:15–62 Beenken L (2014) Pucciniales on Annona (Annonaceae) with special focus on the genus Phakopsora. Mycol Progr 13:791–809 Beenken L (2017) Austropuccinia: a new genus name for the myrtle rust Puccinia psidii placed within the redefined family Sphaerophragmiaceae (Pucciniales). Phytotaxa 1:53–61 Berkeley MJ (1878) Contribution to the botany of H.M.S. ‘Challenger’ 38. Enumeration of the fungi collected during the expedition of H.M.S. ‘Challenger’. III. J Lin Soc Bot 16:52 Cao J, Tian CM, Liang YM, You CJ (2017) A new rust species of Diaphanopellis on Rhododendron oreodoxa from Southern China. Phytotaxa 309:55–65 Chatasiri S, Ono Y (2008) Phylogeny and taxonomy of the Asian grapevine leaf rust fungus, Phakopsora euvitis, and its allies (Uredinales). Mycoscience 49:66–74 Crane PE (2005) Rust fungi on rhododendrons in Asia: Diaphanopellis forrestii gen. et sp. nov., new species of Caeoma, and expanded descriptions of Chrysomyxa dietelii and C. succinea. Mycologia 97:534–548 Cummins GB (1978) Rust fungi on legumes and composites in North America. University of Arizona Press, Tucson Cummins GB, Hiratsuka Y (1983) Illustrated genera of rust fungi, 2nd edn. American Phytopathological Society Press, St Paul Cummins GB, Hiratsuka Y (2003) Illustrated genera of rust fungi, 3rd edn. American Phytopathological Society Press, St Paul Cummins GB, Hiratsuka Y (2003) Families of Uredinales. Rep Tottori Mycol Ins 22:191–208 Dai YC, Zhuang JY (2015) Numbers of fungal species hitherto known in China. Mycosystema 29:652–658 Dean R, Van Kan JA, Pretorius ZA, Hammond-Kosack KE, Pietro AD, Spanu PD, Rudd JJ, Dickman M, Kahmann R, Ellis J (2012) The top 10 fungal pathogens in molecular plant pathology. Mol Plant Path 13:414–430 Dietel P (1928) Uredinales. In: Engler A, Prantl K (eds) Die Natürlichen Pflanzenfamilien Vol II. Engelmann, Leipzig, pp 24–98 Dietel P (1897) Einige neue Uredineen. Hedwigia 36: 297–298 Doungsaard C, Mctaggart AR, Geering ADW, Shivas RG (2018) Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia. Persoonia 40:221–238 Farr DF, Rossman AY (2019) Fungal Databases, U.S. National Fungus Collections, ARS, USDA. https://nt.ars-grin.gov/fungaldatabases/. Accessed 1 Feb 2019 Guo L, Wang YC (1986) Taxonomic study of the genus Uromyces from China. Acta Mycol Sin Suppl 1:107–148 He MQ, Zhao RL, Hyde KD et al (2019) Notes, outline and divergence times of Basidiomycota. Fungal Divers 99:105–367 Hennen JF, Buriticá P (1980) A brief summary of modern rust taxonomic and evolutionary theory. Rep Tottori Mycol Inst 18:243–256 Hennen JF, McCain JW (1993) New species and records of Uredinales from the neotropics. Mycologia 85:970–986 Hiratsuka Y, Hiratsuka N (1980) Morphology of spermogonia and taxonomy of rust fungi. Rep Tottori Mycol Inst 18:257–268 Hiratsuka N, Sato S, Katsuya K, Kakishima M, Hiratsuka Y, Kaneko S, Ono Y, Sato T, Harada Y, Hiratsuka T, Nakayama K (1992) The rust flora of Japan. Tsukuba Shuppankai, Tsukuba Hodges CS, Gardner DE (1984) Hawaiian forest fungi. IV. Rusts on endemic Acacia species. Mycologia 76:332–349 Huelsenbeck JP, Ronquist F (2001) Mrbayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755 Ji JX, Wang Q, Li Z, Li Y, Kakishima M (2016) Notes on rust fungi in China 1. Autoecious life cycle of Puccinia tatarinovii on Prenanthes. Mycotaxon 131:653–661 Ji JX, Li Z, Wang Q, Li Y, Kakishima M (2017) Life cycle of Aecidium klugkistianum on Ligustrum and its new combination, Puccinia klugkistiana. Mycoscience 58:307–311 Ji JX, Li Z, Li Y, Kakishima M (2018) Notes on rust fungi in China 6. Distribution of Puccinia punctiformis and occurrence of its albino teliospores. Mycotaxon 133:339–347 Ji JX, Li Z, Li Y, Kakishima M (2019) Life cycle of Nothoravenelia japonica and its phylogenetic position in Pucciniales, with special reference to the genus Phakopsora. Mycol Progr 18:855–864 Ji JX, Li Z, Li Y, Kakishima M (2020) Life cycle and taxonomy of Chrysomyxa succinea in China and phylogenetic positions of Caeoma species on Rhododendron. Forest Path 50:e12585 Kakishima M, Ji JX, Kasuya T (2018) Puccinia neovelutina nom. nov., a replaced name for Aecidium elaeagni and its new aecial host from Japan. Phytotaxa 336:197–200 Kaneko S (1981) The species of Coleosporium, the cause of pine needle rusts, in the Japanese Archipelago. Rep Tottori Mycol Inst 19:1–159 Katoh K, Rozewicki J, Yamada KD (2017) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform. https://doi.org/10.1093/bib/bbx108 Kew (2018) State of the world’s plants and fungi. The Royal Botanic Gardens Kew, London Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Dictionary of the fungi, 10th edn. CABI, Wallingford Kirk PM, Stalpers JA, Braun U, Crous PW, Hansen K, Hawksworth DL, Hyde KD, Lücking R, Lumbsch TH, Rossman AY, Seifert KA, Stadler M (2013) A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi, and plants. IMA Fungus 4:381–443 Kuprevich VF, Tranzschel VG (1957) Rust fungi. 1. Family Melampsoraceae. In: Savich VP (ed) Cryptogamic plants of the USSR, vol 4. Botanicheskogo Instituta, Komarova, pp 1–518 Laundon GF (1965) The generic names of Uredinales. Mycol Pap Commonw Mycol Inst 99:1–24 Liu Y, Ono Y, Kakishima M, Gafforov Y, Liang YM (2019) Taxonomy and phylogenetic position of Phragmidium altaicum, a newly described rust fungus on Rosa, based on molecular and morphological data. Phytotaxa 423:187–194 Magnus P (1899) Über die bei verwandten Arten auftretenden Modifikationen der Charaktere von Uredineengattungen. Berichte Der Deutschen Botanischen Gesellschaft 17:178–184 Maier W, Wingfield BD, Mennicken M, Wingfeld MJ (2007) Polyphyly and two emerging lineages in the rust genera Puccinia and Uromyces. Mycol Res 111:176–185 McAlpine D (1905) A new genus of Uredineae—Uromycladium. Ann Mycol 3(4):303–323 McTaggart AR, Doungsa-ard C, Geering ADW, Aime MC, Shivas RG (2015) A co-evolutionary relationship exists between Endoraecium (Pucciniales) and its Acacia hosts in Australia. Persoonia 35:50–62 McTaggart AR, Shivas RG, Doungsa-ard C, Weese TL, BeasleyDR HBH, Metcalf DA, Geering ADW (2016) Identification of rust fungi (Pucciniales) on species of Allium in Australia. Australas Plant Pathol 45:581–592 Mennicken M, Maier W, Crous PW, Oberwinkler F (2005) A contribution to the rust flora (Uredinales) on Aizoaceae in southern Africa. Mycol Progr 4:215–224 Monoson HL (1969) The species of Hamaspora. Mycopathol Mycol Appl 37:263–272 Mulenko W, Majewski T, Ruszkiewicz-Michalska M (2008) A preliminary checklist of Micromycetes in Poland. W. Szafer Institute of Botany, Polish Academy of Sciences, Kraków Okane I, Kakishima M (1992) Puccinia nigrolinearis, a new caricicolous rust, and its anamorph Aecidium elaeagn-umbellatae. Trans Myco Soc Japan 33:497–503 Okane I, Ando Y, Yamaoka Y, Akiba M, Kubo S (2020) First report of heteroecism in Stereostratum corticioides, the causal agent of bamboo culm rust. Mycoscience 61:172–178 Ono Y (2000) Taxonomy of the Phakopsora ampelopsidis species complex on vitaceous hosts in Asia including a new species, P. euvitis. Mycologia 92:154–173 Ono Y, Buriticá P, Hennen JF (1992) Delimitation of Phakopsora, Physopella and Cerotelium and their species on Leguminosae. Mycol Res 96:825–850 Ono Y, Chatasiri S, Pota S, Yamaoka Y (2012) Phakopsora montana, another grapevine leaf rust pathogen in Japan. J Plant Pathol 78:338–347 Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817–818 Pota S, Chatasiri S, Ono Y, Yamaoka Y (2013) Taxonomy of two host specialized Phakopsora populations on Meliosma in Japan. Mycoscience 54:19–28 Qi XH, Cai L, Zhao P (2019) Quasipucciniastrum agrimoniae, gen. et sp. nov. on Agrimonia (Rosaceae) from China. Mycology 10:1–10 Salazar-Yepes M, Pardo Cardona VM, Buritica P (2007) Species from Colombia, Ecuador and Peru belonging to the genus Gerwasia Raciborski from the order Uredinales. Caldasia 29:105–120 Savile DBO (1976) Evolution of the rust fungi (Uredinales) as reflected by their ecological problems. Evol Biol 9:137–237 Sawada K (1959) Descriptive catalogue of Taiwan (Formosan) fungi. XI. The College of Agriculture. National Taiwan University Special Publications 8:1–268 Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690 Sydow P, Sydow H (1904) Monographia Uredinearum. I: Genus Puccinia. Borntraeger, Leipzig Sydow P, Sydow H (1910) Monographia Uredinearum. II: Genus Uromyces. Borntraeger, Leipzig Sydow P, Sydow H (1915) Monographia Uredinearum. III: Melampsoraceae, Zaghouaniaceae, Coleosporiaceae. Borntraeger, Leipzig Sydow P, Sydow H (1924) Monographia Uredinearum. IV: Uredineae Imperfectae. Borntraeger, Leipzig Tai FL (1979) Sylloge Fungorum Sinicorum (in Chinese). Science Press, Beijing Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 Tian CM, Shang YZ, Zhuang JY, Wang Q, Kakishima M (2004) Morphological and molecular phylogenetic analysis of Melampsora species on poplars in China. Mycoscience 45:56–66 van der Merwe M, Ericson L, Walker J, Thrall PH, Burdon JJ (2007) Evolutionary relationships among species of Puccinia and Uromyces (Pucciniaceae, Uredinales) inferred from partial protein coding gene phylogenies. Mycol Res 111:163–175 Walker J (2001) A revision of the genus Atelocauda (Uredinales) and description of Racospermyces gen. nov. for some rusts of Acacia. Australas Mycol 20:3–29 Wang L, Jia Y, Zhang X, Qin H (2015) Overview of higher plant diversity in China. Biodivers Sci 23:217–224 Wang K, Kirk PM, Yao YJ (2020) Development trends in taxonomy, with special reference to fungi. J Syst Evol 58:406–412 Webster J, Weber RWS (2007) Introduction to fungi, 3rd edn. Cambridge University Press, Cambridge Wilson M, Henderson DM (1966) The British rust fungi. Cambridge University Press, Cambridge Wingfield BD, Ericson L, Szaro T, Burdor JJ (2004) Phylogenetic patterns in the Uredinales. Australas Plant Pathol 33:327–335 Yang T (2015) Phylogenetic and taxonomic studies of Pucciniastrum s.l. Ph.D. dissertation, Forestry College, Beijing Forestry University, Beijing, China Yang T, Chang W, Cao B, Tian CM, Zhao L, Liang YM (2015) Two new Phragmidium species identified on Rosa plants native to China. Phytotaxa 217:182–190 You CJ, Yang LJ, Tian CM (2019) Resolving the phylogenetic position of Caeoma spp. that infect Rhododendron and Chrysomyxa from China. Mycol Progr 18:1285–1299 Yun HY, Minnis AM, Kim YH, Castlebury LA, Aime MC (2011) The rust genus Frommeëlla revisited: a later synonym of Phragmidium after all. Mycologia 103:1451–1463 Zhao P, Wang QH, Tian CM, Kakishima M, Yamaoka Y (2015) Integrating a numerical taxonomic method and molecular phylogeny for species delimitation of Melampsora species (Melampsoraceae, Pucciniales) on willows in China. PLoS ONE 17:e0144883 Zhao P, Liu F, Li YM, Cai L (2016) Inferring phylogeny and speciation of Gymnosporangium species, and their coevolution with host plants. Sci Rep 6:29339 Zhao RL, Li GJ, Sanchez-Ramirez S et al (2017a) A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective. Fungal Divers 84:43–74 Zhao P, Kakishima M, Wang Q, Cai L (2017b) Resolving the Melampsora epitea complex. Mycologia 109:391–407 Zhao P, Qi XH, Crous PW, Duan WJ, Cai L (2020) Gymnosporangium species on Malus: species delineation, diversity and host alternation. Persoonia 45:68–100 Zhuang JY, Wei SX (1994) An annotated checklist of rust fungi from the Mt. Qomolangma region (Tibetan Everest Himalaya). Mycosystema 7:37–87 Zhuang JY, Zheng XH (2017) Known species of the genus Chrysomyxa Unger (Uredinales, Chrysomyxaceae) in China. J Xichang Univ (nat Sci Ed) 31:1–26 Zhuang JY, Wei SX, Wang YC (1998) Flora Fungorum Sinicorum. Vol 10. Uredinales (I). Science Press, Beijing Zhuang JY, Wei SX, Wang YC (2003) Flora Fungorum Sinicorum. Vol 19. Uredinales (II). Science Press, Beijing Zhuang JY, Wei SX, Wang YC (2005) Flora Fungorum Sinicorum. Vol 25. Uredinales (III). Science Press, Beijing Zhuang JY, Wei SX, Wang YC (2012) Flora Fungorum Sinicorum. Vol 41. Uredinales (IV). Science Press, Beijing Ziller WG (1974) The tree rusts of western Canada. Environment Canada Forestry Service, Ottawa