Construction of T7-Like Expression System in Pseudomonas putida KT2440 to Enhance the Heterologous Expression Level

Tianxin Liang1, Jun Sun1, Shuyun Ju2,1, Shenyi Su3, Lirong Yang2,1, Jianping Wu2,1
1Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, China
2Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, China
3Hwa Chong Institution, Singapore

Tóm tắt

Pseudomonas putida KT2440 has become an attractive chassis for heterologous expression with the development of effective genetic manipulation tools. Improving the level of transcriptional regulation is particularly important for extending the potential of P. putida KT2440 in heterologous expression. Although many strategies have been applied to enhance the heterologous expression level in P. putida KT2440, it was still at a relatively low level. Herein we constructed a T7-like expression system in P. putida KT2440, mimicking the pET expression system in Escherichia coli, which consisted of T7-like RNA polymerase (MmP1) integrated strain and the corresponding expression vector for the heterologous expression enhancement. With the optimization of the insertion site and the copy number of RNA polymerase (RNAP), the relative fluorescence intensity (RFI) of the super-folder green fluorescent protein (sfGFP) was improved by 1.4-fold in MmP1 RNAP integrated strain. The induction point and IPTG concentration were also optimized. This strategy was extended to the gene-reduced strain EM42 and the expression of sfGFP was improved by 2.1-fold. The optimal RNAP integration site was also used for introducing T7 RNAP in P. putida KT2440 and the expression level was enhanced, indicating the generality of the integration site for the T7 expression system. Compared to other inducible expression systems in KT2440, the heterologous expression level of the Mmp1 system and T7 system were more than 2.5 times higher. Furthermore, the 3.6-fold enhanced expression level of a difficult-to-express nicotinate dehydrogenase from Comamonas testosteroni JA1 verified the efficiency of the T7-like expression system in P. putida KT2440. Taken together, we constructed and optimized the T7-like and T7 expression system in P. putida, thus providing a set of applicable chassis and corresponding plasmids to improve recombinant expression level, expecting to be used for difficult-to-express proteins.

Từ khóa


Tài liệu tham khảo

Calero, 2016, Broad-Host-Range ProUSER Vectors Enable Fast Characterization of Inducible Promoters and Optimization Ofp-Coumaric Acid Production in Pseudomonas putida KT2440, ACS Synth. Biol., 5, 741, 10.1021/acssynbio.6b00081

Christina, 2012, Novel Broad Host Range Shuttle Vectors for Expression in Escherichia coli , Bacillus Subtilis and Pseudomonas putida, J. Biotechnol., 161, 71, 10.1016/j.jbiotec.2012.02.020

Cook, 2018, Genetic Tools for Reliable Gene Expression and Recombineering in Pseudomonas putida, J. Ind. Microbiol. Biotechnol., 45, 517, 10.1007/s10295-017-2001-5

Damalas, 2020, SEVA 3.1: Enabling Interoperability of DNA Assembly Among the SEVA, BioBricks and Type IIS Restriction Enzyme Standards, Microb. Biotechnol., 13, 1793, 10.1111/1751-7915.13609

Dammeyer, 2011, Efficient Production of Soluble Recombinant Single Chain Fv Fragments by a Pseudomonas putida Strain KT2440 Cell Factory, Microb. Cell Fact, 10, 11, 10.1186/1475-2859-10-11

dos Santos, 2004, Insights into the Genomic Basis of Niche Specificity of Pseudomonas putida KT2440, Environ. Microbiol., 6, 1264, 10.1111/j.1462-2920.2004.00734.x

Ebert, 2011, Response of Pseudomonas putida KT2440 to Increased NADH and ATP Demand, Appl. Environ. Microbiol., 77, 6597, 10.1128/AEM.05588-11

Elmore, 2017, Development of a High Efficiency Integration System and Promoter Library for Rapid Modification of Pseudomonas putida KT2440, Metab. Eng. Commun., 5, 1, 10.1016/J.METENO.2017.04.001

Gauttam, 2020, Construction of a Novel Dual-Inducible Duet-Expression System for Gene (Over)expression in Pseudomonas putida, Plasmid, 110, 102514, 10.1016/j.plasmid.2020.102514

Gong, 2016, Metabolic Engineering of Pseudomonas putida KT2440 for Complete Mineralization of Methyl Parathion and γ-Hexachlorocyclohexane, ACS Synth. Biol., 5, 434, 10.1021/acssynbio.6b00025

Herrero, 1993, A T7 RNA Polymerase-Based System for the Construction of Pseudomonas Strains with Phenotypes Dependent on TOL-Meta Pathway Effectors, Gene, 134, 103, 10.1016/0378-1119(93)90181-2

Lieder, 2015, Genome Reduction Boosts Heterologous Gene Expression in Pseudomonas putida, Microb. Cell Fact., 14, 23, 10.1186/s12934-015-0207-7

Lu, 2020, Efficient Heterologous Expression of Nicotinate Dehydrogenase in Comamonas Testosteroni CNB-2 with Transcriptional, Folding Enhancement Strategy, Enzyme Microb. Tech., 134, 109478, 10.1016/j.enzmictec.2019.109478

Martínez-García, 2015, SEVA 2.0: An Update of the Standard European Vector Architecture for De-/re-construction of Bacterial Functionalities, Nucleic Acids Res., 43, D1183, 10.1093/nar/gku1114

Martínez-García, 2017, Molecular Tools and Emerging Strategies for Deep Genetic/genomic Refactoring of Pseudomonas, Curr. Opin. Biotechnol., 47, 120, 10.1016/j.copbio.2017.06.013

Martínez-García, 2019, Pseudomonas putida in the Quest of Programmable Chemistry, Curr. Opin. Biotechnol., 59, 111, 10.1016/j.copbio.2019.03.012

Martínez-García, 2014, Pseudomonas 2.0: Genetic Upgrading of P. Putida KT2440 as an Enhanced Host for Heterologous Gene Expression, Microb. Cell Fact., 13, 159, 10.1186/s12934-014-0159-3

Nikel, 2016, From Dirt to Industrial Applications: Pseudomonas putida as a Synthetic Biology Chassis for Hosting Harsh Biochemical Reactions, Curr. Opin. Chem. Biol., 34, 20, 10.1016/j.cbpa.2016.05.011

Nikel, 2018, Pseudomonas putida as a Functional Chassis for Industrial Biocatalysis: From Native Biochemistry to Trans-metabolism, Metab. Eng., 50, 142, 10.1016/j.ymben.2018.05.005

Nikel, 2014, Biotechnological Domestication of Pseudomonads Using Synthetic Biology, Nat. Rev. Microbiol., 12, 368, 10.1038/nrmicro3253

Poblete-Castro, 2012, Industrial Biotechnology of Pseudomonas putida and Related Species, Appl. Microbiol. Biotechnol., 93, 2279, 10.1007/s00253-012-3928-0

Shilling, 2020, Improved Designs for pET Expression Plasmids Increase Protein Production Yield in Escherichia coli, Commun. Biol., 3, 10.1038/s42003-020-0939-8

Sun, 2018, Genome Editing and Transcriptional Repression in Pseudomonas putida KT2440 via the Type II CRISPR System, Microb. Cell Fact., 17, 41, 10.1186/s12934-018-0887-x

Timmis, 2002, Pseudomonas putida: a Cosmopolitan Opportunist Par Excellence, Environ. Microbiol., 4, 779, 10.1046/j.1462-2920.2002.00365.x

Walker, 2002, The Effect of Increasing Plasmid Size on Transformation Efficiency in Escherichia coli, J. Exp. Microbiol. Immunol., 2, 207

Wang, 2018, Bacteriophage T7 Transcription System: an Enabling Tool in Synthetic Biology, Biotechnol. Adv., 36, 2129, 10.1016/j.biotechadv.2018.10.001

Xiao, 2014, CasOT: A Genome-Wide Cas9/gRNA Off-Target Searching Tool, Bioinformatics, 30, 1180, 10.1093/bioinformatics/btt764

Yang, 2012, Plasmid Size Can Affect the Ability of Escherichia coli to Produce High-Quality Plasmids, Biotechnol. Lett., 34, 2017, 10.1007/s10529-012-0994-4

Yang, 2010, Cloning, Expression and Functional Analysis of Nicotinate Dehydrogenase Gene Cluster From Comamonas Testosteroni JA1 That Can Hydroxylate 3-Cyanopyridine, Biodegradation, 21, 593, 10.1007/s10532-010-9327-2

Zhao, 2017, Novel T7-like Expression Systems Used for Halomonas, Metab. Eng., 39, 128, 10.1016/j.ymben.2016.11.007

Zobel, 2015, Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida, ACS Synth. Biol., 4, 1341, 10.1021/acssynbio.5b00058