Constructing a genetic linkage map of Vitis aestivalis-derived “Norton” and its use in comparing Norton and Cynthiana
Tóm tắt
The first microsatellite-based linkage map for Vitis aestivalis was constructed using 183 progeny from the crosses of V. aestivalis-derived “Norton” and V. vinifera “Cabernet Sauvignon”. A total of 1157 simple sequence repeat (SSR) markers were tested, 859 were amplified via PCR and 413 were polymorphic for at least one parent. The map for Norton consisted of 376 markers and covered 1496.6 centimorgan (cM) on 19 chromosomes. The consensus map consisted of 411 markers on 19 linkage groups with a total distance of 1678.6 cM. Although isozyme and SSR marker analyses in 1993 and 2009 provided preliminary evidence that Norton and Cynthiana grapes are genetically identical, only five banding patterns and four microsatellite loci were reported. This study characterized the relationship between these two cultivars using 185 microsatellites spanning 19 linkage groups for a genome-wide analysis. Four accessions of Norton and three accessions of Cynthiana were used; capillary electrophoresis results revealed Norton and Cynthiana to be identical at all selected loci.
Tài liệu tham khảo
Adam-Blondon A-F, Roux C, Claux D, Butterlin G, Merdinoglu D, This P (2004) Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics. Theor Appl Genet 109:1017–1027
Adhikari P, Chen L-L, Chen X, Sapkota SD, Hwang C-F (2014) Interspecific hybrid identification of Vitis aestivalis-derived ‘Norton’-based populations using microsatellite markers. Sci Hortic 179:363–366
Ambers CP (2013) A historical hypothesis on the origin of the Norton grape. J Wine Res 24:85–95
Ambers RK, Ambers CP (2004) Dr. Daniel Norborne Norton and the origin of the Norton grape. Amer Wine Soc J 36:77–87
Bautista J, Dangl GS, Yang J, Reisch B, Stover E (2008) Use of genetic markers to assess pedigrees of grape cultivars and breeding program selections. Am J Enol Vitic 59:248–254
Bellin D, Peressotti E, Merdinoglu D, Wiedemann-Merdinoglu S, Adam-Blondon AF, Cipriani G, Morgante M, Testolin R, Di Gaspero G (2009) Resistance to Plasmopara viticola in grapevine 'Bianca' is controlled by a major dominant gene causing localised necrosis at the infection site. Theor Appl Genet 120:163–176
Blasi P, Blanc S, Wiedemann-Merdinoglu S, Prado E, Ruhl EH, Mestre P, Merdinoglu D (2011) Construction of a reference linkage map of Vitis amurensis and genetic mapping of Rpv8, a locus conferring resistance to grapevine downy mildew. Theor Appl Genet 123:43–53
Bordelon BP, Ellis MA, Foster R (2007) Midwest commercial small fruit and grape spray guide. Purdue University Extension Publication ID-169, West Lafayette
Bowers JE, Dangl GS, Vignani R, Meredith CP (1996) Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.) Genome 39:628–633
Bowers JE, Dangl GS, Meredith CP (1999) Development and characterization of additional microsatellite DNA markers for grape. Am J Enol Vitic 50:243–246
Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138:1251–1274
Dami I, Bordelon B, Ferree DC, Brown M, Ellis MA, Williams RN, Doohan D (2005) Midwest grape production guide. Ohio State University Extension 919:19
De Andrés M, Benito A, Perez-Rivera G, Ocete R, Lopez M, Gaforio L, Muñoz G, Cabello F, Jm MZ, Arroyo-García R (2012) Genetic diversity of wild grapevine populations in Spain and their genetic relationships with cultivated grapevines. Mol Ecol 21:800–816
Decroocq V, Fave M, Hagen L, Bordenave L, Decroocq S (2003) Development and transferability of apricot and grape EST microsatellite markers across taxa. Theor Appl Genet 106:912–922
Di Gaspero G, Cipriani G, Marrazzo MT, Andreetta D, Castro MJP, Peterlunger E, Testolin R (2005) Isolation of (AC) n-microsatellites in Vitis vinifera L. and analysis of genetic background in grapevines under marker assisted selection. Mol Breed 15:11–20
Di Gaspero G, Cipriani G, Adam-Blondon A-F, Testolin R (2007) Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates. Theor Appl Genet 114:1249–1263
Doligez A, Adam-Blondon AF, Cipriani G, Di Gaspero G, Laucou V, Merdinoglu D, Meredith CP, Riaz S, Roux C, This P (2006) An integrated SSR map of grapevine based on five mapping populations. Theor Appl Genet 113:369–382
Doucleff M, Jin Y, Gao F, Riaz S, Krivanek AF, Walker MA (2004) A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica. Theor Appl Genet 109:1178–1187
Fatahi R, Ebadi A, Bassil N, Mehlenbacher S, Zamani Z (2015) Characterization of Iranian grapevine cultivars using microsatellite markers. Vitis 42:185–192
Fischer B, Salakhutdinov I, Akkurt M, Eibach R, Edwards K, Töpfer R, Zyprian E (2004) Quantitative trait locus analysis of fungal disease resistance factors on a molecular map of grapevine. Theor Appl Genet 108:501–515
Giannetto S, Caruana R, La Notte P, Costacurta A, Crespan M (2010) A survey of Maltese grapevine germplasm using SSR markers. Am J Enol Vitic 61:419–424
Grando MS, Bellin D, Edwards K, Pozzi C, Stefanini M, Velasco R (2003) Molecular linkage maps of Vitis vinifera L. and Vitis riparia Mchx. Theor Appl Genet 106:1213–1224
Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137:1121–1137
Guo Y, Lin H, Liu Z, Zhao Y, Guo X, Li K (2014) SSR and SRAP marker-based linkage map of Vitis vinifera L. Biotechnol & Biotechnol Equip 28:221–229
Harris J (2012) The great grape debate. The Midwest Wine Grower 4:19–21
Hedrick UP (1908) The grapes of New York. State of New York, Dept. of Agriculture 15th Annual Report, Volume III, part II. J.R. Lyon Co. State Printers, Albany
van Heerden CJ, Burger P, Vermeulen A, Prins R (2014) Detection of downy and powdery mildew resistance QTL in a ‘regent’בRedGlobe’population. Euphytica 200:281–295
Hoffmann S, Di Gaspero G, Kovacs L, Howard S, Kiss E, Galbacs Z, Testolin R, Kozma P (2008) Resistance to Erysiphe necator in the grapevine 'Kishmish vatkana' is controlled by a single locus through restriction of hyphal growth. Theor Appl Genet 116:427–438
Huang XC, Quesada MA, Mathies RA (1992) DNA sequencing using capillary array electrophoresis. Anal Chem 64:2149–2154
Huang H, Lu J, Ren Z, Hunter W, Dowd SE, Dang P (2011) Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping. Mol Breed 28:241–254
Husmann G (1883) American grape growing and wine making. Orange Judd Co., New York
Kamas J (2014) Growing grapes in Texas: from the commercial vineyard to the backyard vine. Texas A&M University Press, College Station, TX
Keeley K, Preece JE, Taylor BH (2003) Increased rooting of 'Norton' grape cuttings using auxins and gibberellin biosynthesis inhibitors. Hortscience 38:281–283
Kliman T (2010) The wild vine: a forgotten grape and the untold story of American wine. Clarkson Potter, NY
Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugenics 12:172–175
Lefort F, Roubelakis-Angelakis KK (2001) Genetic comparison of Greek cultivars of Vitis vinifera L. by nuclear microsatellite profiling. Am J Enol Vitic 52:101–108
Li C, Erwin A, Pap D, Coleman C, Higgins AD, Kiss E, Kozma P, Hoffmann S, Ramming DW, Kovács LG (2013) Selection for Run1-Ren1 dihybrid grapevines using microsatellite markers. Am J Enol Vitic 64:152–155
Lin H, Walker MA (1998) Identifying grape rootstocks with simple sequence repeat (SSR) DNA markers. Am J Enol Vitic 49:403–407
Lopes MS, Sefc KM, Dias EE, Steinkellner H, Machado MLC, Machado AC (1999) The use of microsatellites for germplasm management in a Portuguese grapevine collection. Theor Appl Genet 99:733–739
Lowe KM, Walker MA (2006) Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii)× riparia Gloire (Vitis riparia). Theor Appl Genet 112:1582–1592
Main GL, Morris JR (2004) Leaf-removal effects on Cynthiana yield, juice composition, and wine composition. Am J Enol Vitic 55:147–152
Martín JP, Borrego J, Cabello F, Ortiz JM (2003) Characterization of Spanish grapevine cultivar diversity using sequence-tagged microsatellite site markers. Genome 46:10–18
Martinez L, Cavagnaro P, Masuelli R, Zuniga M (2006) SSR-based assessment of genetic diversity in south American Vitis vinifera varieties. Plant Sci 170:1036–1044
Merdinoglu D, Butterlin G, Bevilacqua L, Chiquet V, Adam-Blondon A-F, Decroocq S (2005) Development and characterization of a large set of microsatellite markers in grapevine (Vitis vinifera L.) suitable for multiplex PCR. Mol Breed 15:349–366
Moreira FM, Madini A, Marino R, Zulini L, Stefanini M, Velasco R, Kozma P, Grando MS (2011) Genetic linkage maps of two interspecific grape crosses (Vitis spp.) used to localize quantitative trait loci for downy mildew resistance. Tree Genet & Genomes 7:153–167
Morris JR, Main GL (2010) An investigation of training system, pruning severity, spur length, and shoot positioning on Cynthiana/Norton grapes. Am J Enol Vitic 61:445–450
Morton LT (1985) Winegrowing in eastern America: an illustrated guide to viniculture east of the Rockies. Cornell University Press, Ithaca and London
van Ooijen JW (2006) JoinMap 4, software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Wageningen
Parker LD, Bordallo P, Colova VM (2005) Tracing the pedigree of Cynthiana grape by DNA microsatellite markers. Proc Fla State Hort Soc 118:200–204
Parker LD, Bordallo PN, Colova VM (2009) Phylogenetics analysis of north American native Cynthiana/Norton grape variety using DNA microsatellite markers. Acta Hort 827:225–228
Paterson AH, DeVerna JW, Lanini B, Tanksley SD (1990) Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. Genetics 124:735–742
Regner F, Stadlbauer A, Eisenheld C (2000) Molecular markers for genotyping grapevine and for identifying clones of traditional varieties. Acta Hort 546:331–341
Reisch BI, Goodman RN, Martens M-H, Weeden NF (1993) The relationship between Norton and Cynthiana, red wine cultivars derived from Vitis aestivalis. Am J Enol Vitic 44:441–444
Riaz S, Krivanek A, Xu K, Walker MA (2006) Refined mapping of the Pierce’s disease resistance locus, PdR1, and sex on an extended genetic map of Vitis rupestris× V. arizonica. Theor Appl Genet 113:1317–1329
Riaz S, Tenscher AC, Graziani R, Krivanek AF, Ramming DW, Walker MA (2009) Using marker-assisted selection to breed Pierce’s disease-resistant grapes. Am J Enol Vitic 60:199–207
Riaz S, Tenscher A, Ramming D, Walker MA (2011) Using a limited mapping strategy to identify major QTLs for resistance to grapevine powdery mildew (Erysiphe necator) and their use in marker-assisted breeding. Theor Appl Genet 122:1059–1073
Salmaso M, Malacarne G, Troggio M, Faes G, Stefanini M, Grando MS, Velasco R (2008) A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes. Theor Appl Genet 116:1129–1143
Sapkota S, Chen L-L, Schreiner K, Ge H, Hwang C-F (2015) A phenotypic study of Botrytis bunch rot resistance in Vitis aestivalis-derived ‘Norton’ grape. Trop Plant Pathol 40:279–282
Sawler J, Reisch B, Aradhya MK, Prins B, Zhong GY, Schwaninger H, Simon C, Buckler E, Myles S (2013) Genomics assisted ancestry deconvolution in grape. PLoS One 8:e80791
Scott KD, Eggler P, Seaton G, Rossetto M, Ablett EM, Lee LS, Henry RJ (2000) Analysis of SSRs derived from grape ESTs. Theor Appl Genet 100:723–726
Sefc K, Steinkellner H, Glössl J, Kampfer S, Regner F (1998) Reconstruction of a grapevine pedigree by microsatellite analysis. Theor Appl Genet 97:227–231
Sefc KM, Regner F, Turetschek E, Glossl J, Steinkellner H (1999) Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. Genome 42:367–373
Sevini F, Marino R, Segala C, Grando MS (2003) Development and transferability of grape EST-SSR markers suitable for mapping in Vitis spp. In: XLVII Italian society of agricultural genetics-SIGA annual congress: proceedings, Verona, Italy, 24–27 September 2003:5.57. ISBN 88–900622-4-X
Stover E, Aradhya M, Yang J, Bautista J, Dangl GS (2009) Investigations into the origin of ‘Norton’ grape using SSR markers. Proc Fla State Hort Soc 122:19–24
This P, Jung A, Boccacci P, Borrego J, Botta R, Costantini L, Crespan M, Dangl G, Eisenheld C, Ferreira-Monteiro F (2004) Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theor Appl Genet 109:1448–1458
Thomas M, Scott N (1993) Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86:985–990
Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M (2007) A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigs. Genetics 176:2637–2650
Voorrips R (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78
Welter LJ, Göktürk-Baydar N, Akkurt M, Maul E, Eibach R, Töpfer R, Zyprian EM (2007) Genetic mapping and localization of quantitative trait loci affecting fungal disease resistance and leaf morphology in grapevine (Vitis vinifera L). Mol Breed 20:359–374
Zhang J, Hausmann L, Eibach R, Welter LJ, Töpfer R, Zyprian EM (2009) A framework map from grapevine V3125 (Vitis vinifera ‘Schiava grossa’בRiesling’)× rootstock cultivar ‘Börner’(Vitis riparia× Vitis cinerea) to localize genetic determinants of phylloxera root resistance. Theor Appl Genet 119:1039–1051