Conservation genetics of elasmobranchs of the Mexican Pacific Coast, trends and perspectives
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Abercrombie, 2005, Global-scale genetic identification of hammerhead sharks: application to assessment of the international fin trade and law enforcement, Conserv. Genet., 6, 775, 10.1007/s10592-005-9036-2
Aguilar, 2019, Modelling the differences between El Niño and La Niña years and planktonic larval duration on dispersal across the southeast Australian biogeographic barrier, Geo Geogr. Environ., 6
Allendorf, 2010, Genomics and the future of conservation genetics, Nat. Rev. Genet., 11, 697, 10.1038/nrg2844
Allendorf, 2013
Applegate, 1993, An overview of Mexican shark fisheries, with suggestions for shark conservation in Mexico, 115, 31
Attard, 2018, From conservation genetics to conservation genomics: a genome-wide assessment of blue whales (Balaenoptera musculus) in Australian feeding aggregations, R. Soc. Open Sci., 5, 170925, 10.1098/rsos.170925
Avise, 1987, Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics, Annu. Rev. Ecol. Syst., 18, 489, 10.1146/annurev.es.18.110187.002421
Bailleul, 2018, Large-scale genetic panmixia in the blue shark (Prionace glauca): A single worldwide population, or a genetic lag-time effect of the “grey zone” of differentiation?, Evol. Appl., 11, 614, 10.1111/eva.12591
Balkenhol, 2019, Landscape genomics: understanding relationships between environmental heterogeneity and genomic characteristics of populations, 261
Barker, 2015, Genetic structure of leopard shark (Triakis semifasciata) populations along the Pacific coast of North America, J. Exp. Mar. Biol. Ecol., 472, 151, 10.1016/j.jembe.2015.06.020
Beheregaray, 2008, Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere, Mol. Ecol., 17, 3754
Benavides, 2011, Phylogeography of the copper shark (Carcharhinus brachyurus) in the southern hemisphere: implications for the conservation of a coastal apex predator, Mar. Freshwater Res., 62, 861, 10.1071/MF10236
Bernard, 2018, Transcriptome-derived microsatellites demonstrate strong genetic differentiation in Pacific White Sharks, J. Hered., 109, 771
Bester-van der Merwe, 2015, Molecular species identification and population genetics of chondrichthyans in South Africa: current challenges, priorities and progress, Afr. Zool., 50, 205, 10.1080/15627020.2015.1063408
Bond, 2019, Top predators induce habitat shifts in prey within marine protected areas, Oecologia, 190, 375, 10.1007/s00442-019-04421-0
Boomer, 2013, Frequency of multiple paternity in gummy shark, Mustelus antarcticus, and rig, Mustelus lenticulatus, and the implications of mate encounter rate, postcopulatory influences, and reproductive mode, J. Hered., 104, 371, 10.1093/jhered/est010
Bornatowski, 2018, Ecological role and historical trends of large pelagic predators in a subtropical marine ecosystem of the South Atlantic, Rev. Fish Biol. Fish., 28, 241, 10.1007/s11160-017-9492-z
Boulton, 2018, An inconvenient truth: the unconsidered benefits of convenience polyandry, Trends Ecol. Evol., 33, 904, 10.1016/j.tree.2018.10.002
Brauer, 2017, Comparative ecological transcriptomics and the contribution of gene expression to the evolutionary potential of a threatened fish, Mol. Ecol., 26, 6841, 10.1111/mec.14432
Byrne, 2012, Genetic mating system of the brown smoothhound shark (Mustelus henlei), including a literature review of multiple paternity in other elasmobranch species, Mar. Biol., 159, 749, 10.1007/s00227-011-1851-z
Caballero, 2012, Application of multiplex PCR approaches for shark molecular identification: feasibility and applications for fisheries management and conservation in the Eastern Tropical Pacific, Mol. Ecol. Resour., 12, 233, 10.1111/j.1755-0998.2011.03089.x
Camhi, 2009
Cardeñosa, 2014, Genetic diversity and population structure of the pelagic thresher shark (Alopias pelagicus) in the Pacific Ocean: evidence for two evolutionarily significant units, PLoS One, 9, 10.1371/journal.pone.0110193
Carrillo-Briceño, 2018, Shark and ray diversity in the Tropical America (Neotropics)—an examination of environmental and historical factors affecting diversity, PeerJ, 6, 10.7717/peerj.5313
Castillo-Olguín, 2012, Assessment of the population genetic structure of Sphyrna lewini to identify conservation units in the Mexican Pacific, Cienc. Mar., 38, 635, 10.7773/cm.v38i4.2110
Castillo-Páez, 2013, Strong population structure and shallow mitochondrial phylogeny in the banded guitarfish, Zapteryx exasperata (Jordan y Gilbert, 1880), from the northern Mexican Pacific, J. Hered., 105, 91, 10.1093/jhered/est067
Castillo-Páez, 2017, Cutting through the Gordian knot: unravelling morphological, molecular, and biogeographical patterns in the genus Zapteryx (guitarfish) from the Mexican Pacific, ICES J. Mar. Sci., 74, 1630, 10.1093/icesjms/fsx021
Castro, 2007, Population genetic structure of Earth's largest fish, the whale shark (Rhincodon typus), Mol. Ecol., 16, 5183, 10.1111/j.1365-294X.2007.03597.x
Ceballos, 2015, Accelerated modern human–induced species losses: Entering the sixth mass extinction, Sci. Adv., 1, 10.1126/sciadv.1400253
Ceballos, 2017, Biological annihilation via the ongoing sixth mass extinction signaled by vertebrate population losses and declines, Proc. Natl. Acad. Sci., 114, E6089, 10.1073/pnas.1704949114
Chabot, 2009, Global population structure of the tope (Galeorhinus galeus) inferred by mitochondrial control region sequence data, Mol. Ecol., 18, 545, 10.1111/j.1365-294X.2008.04047.x
Chabot, 2014, Frequency of multiple paternity varies between two populations of brown smoothhound shark, Mustelus henlei, Mar. Biol., 161, 797, 10.1007/s00227-013-2378-2
Chabot, 2015, The effect of biogeographic and phylogeographic barriers on gene flow in the brown smoothhound shark, Mustelus henlei, in the northeastern Pacific, Ecol. Evol., 5, 1585, 10.1002/ece3.1458
Chana-Munoz, 2017, Multi-tissue RNA-seq and transcriptome characterisation of the spiny dogfish shark (Squalus acanthias) provides a molecular tool for biological research and reveals new genes involved in osmoregulation, PLoS One, 12, 10.1371/journal.pone.0182756
Clarke, 2015, Global mitochondrial DNA phylogeography and population structure of the silky shark, Carcharhinus falciformis, Mar. Biol., 162, 945, 10.1007/s00227-015-2636-6
Coissac, 2016, From barcodes to genomes: extending the concept of DNA barcoding, Mol. Ecol., 25, 1423, 10.1111/mec.13549
Compagno, 1990, Alternative life-history styles of cartilaginous fishes in time and space, Environ. Biol. Fishes, 28, 33, 10.1007/BF00751027
Compagno, 2005
CONAPESCA-INP, 2004
Cornuet, 2008, Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation, Bioinformatics, 24, 2713, 10.1093/bioinformatics/btn514
Corrigan, 2015, A multilocus comparative study of dispersal in three codistributed demersal sharks from eastern Australia, Can. J. Fish. Aquat. Sci., 73, 406, 10.1139/cjfas-2015-0085
Corrigan, 2015, A case of genetic polyandry in the shortfin mako Isurus oxyrinchus, J. Fish Biol., 87, 794, 10.1111/jfb.12743
Corrigan, 2017, Historical introgression drives pervasive mitochondrial admixture between two species of pelagic sharks, Mol. Phylogen. Evol., 110, 122, 10.1016/j.ympev.2017.03.011
Dallarés, 2017, Composition and seasonal dynamics of the parasite communities of Scyliorhinus canicula (L., 1758) and Galeus melastomus Rafinesque, 1810 (Elasmobranchii) from the NW Mediterranean Sea in relation to host biology and ecological features, Hydrobiologia, 799, 275, 10.1007/s10750-017-3226-z
Daly-Engel, 2012, Global phylogeography with mixed-marker analysis reveals male-mediated dispersal in the endangered scalloped hammerhead shark (Sphyrna lewini), PLoS One, 7, 10.1371/journal.pone.0029986
Davidson, 2016, Why have global shark and ray landings declined: improved management or overfishing?, Fish Fish., 17, 438, 10.1111/faf.12119
Dent, 2015
Díaz-Gómez, 2018
Díaz-Jaimes, 2016, Assessing genetic variation in juvenile white sharks using teeth collected from landfills in Baja California, México. Conserv. Genet. Resour., 8, 431, 10.1007/s12686-016-0589-9
Dibattista, 2008, Are indirect genetic benefits associated with polyandry? Testing predictions in a natural population of lemon sharks, Mol. Ecol., 17, 783, 10.1111/j.1365-294X.2007.03623.x
Domingues, 2018, The importance of considering genetic diversity in shark and ray conservation policies, Conserv. Genet., 19, 501, 10.1007/s10592-017-1038-3
Donaldson, 2016, Taxonomic bias and international biodiversity conservation research, FACETS, 1, 105, 10.1139/facets-2016-0011
Dudgeon, 2015, The relationship between abundance and genetic effective population size in elasmobranchs: an example from the globally threatened zebra shark Stegostoma fasciatum within its protected range, Conserv. Genet., 16, 1443, 10.1007/s10592-015-0752-y
Dudgeon, 2012, A review of the application of molecular genetics for fisheries management and conservation of sharks and rays, J. Fish Biol., 80, 1789, 10.1111/j.1095-8649.2012.03265.x
Dulvy, 2014, Extinction risk and conservation of the world's sharks and rays, eLIFE, 3, 10.7554/eLife.00590
Dulvy, 2017, Challenges and priorities in shark and ray conservation, Curr. Biol., 27, R565, 10.1016/j.cub.2017.04.038
Duncan, 2006, Global phylogeography of the scalloped hammerhead shark (Sphyrna lewini), Mol. Ecol., 15, 2239, 10.1111/j.1365-294X.2006.02933.x
Ehemann, 2018, Updated checklist of the extant Chondrichthyes within the Exclusive Economic Zone of Mexico, ZooKeys, 774, 17, 10.3897/zookeys.774.25028
Eitner, 1995, Systematics of the genus Alopias (Lamniformes: Alopiidae) with evidence for the existence of an unrecognized species, Copeia, 1995, 562, 10.2307/1446753
Feldheim, 2014, Two decades of genetic profiling yields first evidence of natal philopatry and long-term fidelity to parturition sites in sharks, Mol. Ecol., 23, 110, 10.1111/mec.12583
Félix-López, 2019, Possible female philopatry of the smooth hammerhead shark, Sphyrna zygaena, revealed by genetic structure patterns, J. Fish Biol., 94, 671, 10.1111/jfb.13949
Fitzpatrick, 2012, Assessing the potential for post-copulatory sexual selection in elasmobranchs, J. Fish Biol., 80, 1141, 10.1111/j.1095-8649.2012.03256.x
Frankham, 2015, Genetic rescue of small inbred populations: meta-analysis reveals large and consistent benefits of gene flow, Mol. Ecol., 24, 2610, 10.1111/mec.13139
Frankham, 2010
Gagnaire, 2015, Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era, Evol. Appl., 8, 769, 10.1111/eva.12288
Galván-Tirado, 2013, Historical demography and genetic differentiation inferred from the mitochondrial DNA of the silky shark (Carcharhinus falciformis) in the Pacific Ocean, Fish. Res., 147, 36, 10.1016/j.fishres.2013.03.020
Gaughran, 2018, Theory, practice, and conservation in the age of genomics: the Galápagos giant tortoise as a case study, Evol. Appl., 11, 1084, 10.1111/eva.12551
Gervais, 2018, Too hot to handle? Using movement to alleviate effects of elevated temperatures in a benthic elasmobranch, Hemiscyllium ocellatum, Mar. Biol., 165, 162, 10.1007/s00227-018-3427-7
Glenn, 2011, Field guide to next-generation DNA sequencers, Mol. Ecol. Resour., 11, 759, 10.1111/j.1755-0998.2011.03024.x
Goldberg, 2007, Epigenetics: a landscape takes shape, Cell, 128, 635, 10.1016/j.cell.2007.02.006
Goodman, 2019, The relationship between geographic range extent, sea surface temperature and adult traits in coastal temperate fishes, J. Biogeogr., 46, 1438, 10.1111/jbi.13595
Goshima, 2016, The complement system of elasmobranches revealed by liver transcriptome analysis of a hammerhead shark, Sphyrna zygaena, Dev. Comp. Immunol., 61, 13, 10.1016/j.dci.2016.03.009
Green, 2017, Variability in multiple paternity rates for grey reef sharks (Carcharhinus amblyrhynchos) and scalloped hammerheads (Sphyrna lewini), Sci. Rep., 7, 1528, 10.1038/s41598-017-01416-w
Grijalva-Chon, 2002, Homogeneidad genética en tiburón angelito (Squatina californica) del Golfo de California, evidencia por análisis PCR–RFLP de la región control del ADN mitocondrial, Cienc. Mar, 17, 37
Grubbs, 2016, Critical assessment and ramifications of a purported marine trophic cascade, Sci. Rep., 6, 20970, 10.1038/srep20970
Grummer, 2019, Aquatic landscape genomics and environmental effects on genetic variation, Trends Ecol. Evol., 34, 641, 10.1016/j.tree.2019.02.013
Gubili, 2012, Application of molecular genetics for conservation of the white shark, Carcharodon carcharias, L. 1758, 357
Gutenkunst, 2009, Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data, PLoS Genet., 5, 10.1371/journal.pgen.1000695
Hanner, 2016, Conclusion: DNA-based authentication of shark products and implications for conservation and management, 171
Healy, 2018, Conserved patterns of alternative splicing in response to cold acclimation in fish, bioRxiv, 1, 429704
Hedrick, 1992, Conservation genetics: techniques and fundamentals, Ecol. Appl., 2, 30, 10.2307/1941887
Heupel, 2010, Science or slaughter: need for lethal sampling of sharks, Conserv. Biol., 24, 1212, 10.1111/j.1523-1739.2010.01491.x
Jorgensen, 2009, Philopatry and migration of Pacific white sharks, Proc. R. Soc. Lond. Ser. B: Biol. Sci., 277, 679
Karl, 2008, The effect of multiple paternity on the genetically effective size of a population, Mol. Ecol., 17, 3973, 10.1111/j.1365-294X.2008.03902.x
Keeney, 2006, Worldwide phylogeography of the blacktip shark (Carcharhinus limbatus) inferred from mitochondrial DNA reveals isolation of western Atlantic populations coupled with recent Pacific dispersal, Mol. Ecol., 15, 3669, 10.1111/j.1365-294X.2006.03036.x
King, 2015, Genetic analysis of stock structure of blue shark (Prionace glauca) in the north Pacific ocean, Fish. Res., 172, 181, 10.1016/j.fishres.2015.06.029
Kitamura, 1996, Mitochondrial DNA analysis for the cytochrome b gene and D-loop region from the bull shark Carcharhinus leucas, Fish. Sci., 62, 21, 10.2331/fishsci.62.21
Kyne, 2012
Lafferty, 2018, Detecting southern California's white sharks with environmental DNA, Front. Mar. Sci., 5, 1, 10.3389/fmars.2018.00355
Larson, 2011, Relatedness and polyandry of sixgill sharks, Hexanchus griseus, in an urban estuary, Conserv. Genet., 12, 679, 10.1007/s10592-010-0174-9
Larson, 2014, Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha), Evol. Appl., 7, 355, 10.1111/eva.12128
Larson, 2017, Review of current conservation genetic analyses of Northeast Pacific sharks, Adv. Mar. Biol., 77, 79, 10.1016/bs.amb.2017.06.005
Last, 2016
Lewallen, 2007, Genetic structure of leopard shark (Triakis semifasciata) populations in California waters, Mar. Biol., 152, 599, 10.1007/s00227-007-0714-0
Li, 2011, Inference of human population history from individual whole-genome sequences, Nature, 475, 493, 10.1038/nature10231
Lighten, 2016, Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae), R. Soc. Open Sci., 3, 160299, 10.1098/rsos.160299
Liu, 2018, Genetic diversity and connectivity of the megamouth shark (Megachasma pelagios), PeerJ, 6
Lowerre-Barbieri, 2017, Reproductive resilience: a paradigm shift in understanding spawner-recruit systems in exploited marine fish, Fish Fish., 18, 285, 10.1111/faf.12180
Luikart, 2019, Population genomics: advancing understanding of nature, 3
Lyons, 2017, Who's my daddy? Considerations for the influence of sexual selection on multiple paternity in elasmobranch mating systems, Ecol. Evol., 7, 5603, 10.1002/ece3.3086
Machado, 2018, De novo assembly of the kidney and spleen transcriptomes of the cosmopolitan blue shark, Prionace glauca, Mar. Genom., 37, 50, 10.1016/j.margen.2017.11.009
Magnussen, 2007, Genetic tracking of basking shark products in international trade, Anim. Conserv., 10, 199, 10.1111/j.1469-1795.2006.00088.x
McClenachan, 2012, Extinction risk and bottlenecks in the conservation of charismatic marine species, Conserv. Lett., 5, 73, 10.1111/j.1755-263X.2011.00206.x
Meijaard, 2015, Geographic bias in citation rates of conservation research, Conserv. Biol., 29, 920, 10.1111/cobi.12489
Mieras, 2017, The economy of shark conservation in the Northeast Pacific: the role of ecotourism and citizen science, Adv. Mar. Biol., 78, 121, 10.1016/bs.amb.2017.08.003
Nance, 2011, Demographic processes underlying subtle patterns of population structure in the scalloped hammerhead shark, Sphyrna lewini, PLoS One, 6, 10.1371/journal.pone.0021459
Nunziata, 2018, Estimation of contemporary effective population size and population declines using RAD sequence data, Heredity, 120, 196, 10.1038/s41437-017-0037-y
Oliver, 2015, Global patterns in the bycatch of sharks and rays, Mar. Policy, 54, 86, 10.1016/j.marpol.2014.12.017
Oñate-González, 2015, Mitochondrial genetic structure and matrilineal origin of white sharks, Carcharodon carcharias, in the Northeastern Pacific: implications for their conservation, J. Hered., 106, 347, 10.1093/jhered/esv034
Onimaru, 2018, A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra, Sci. Data, 5, 180197, 10.1038/sdata.2018.197
Ortega, 2010, Physical, chemical, and biological oceanography of the Gulf of California, 24
Ovenden, 2015, Ocean's eleven: a critical evaluation of the role of population, evolutionary and molecular genetics in the management of wild fisheries, Fish Fish., 16, 125, 10.1111/faf.12052
Ovenden, 2016, Can estimates of genetic effective population size contribute to fisheries stock assessments?, J. Fish Biol., 89, 2505, 10.1111/jfb.13129
Parmentier, 2013, How effective are DNA barcodes in the identification of african rainforest trees?, PLoS One, 8, 10.1371/journal.pone.0054921
Pazmiño, 2017, Genome-wide SNPs reveal low effective population size within confined management units of the highly vagile Galapagos shark (Carcharhinus galapagensis), Conserv. Genet., 18, 1151, 10.1007/s10592-017-0967-1
Pazmiño, 2018, Strong trans-Pacific break and local conservation units in the Galapagos shark (Carcharhinus galapagensis) revealed by genome-wide cytonuclear markers, Heredity, 120, 407, 10.1038/s41437-017-0025-2
Pérez Jiménez, 2005, A New Eastern North Pacific smoothhound shark (Genus Mustelus, Family Triakidae) from the Gulf of California, Copeia, 2005, 834, 10.1643/0045-8511(2005)005[0834:ANENPS]2.0.CO;2
Pérez-Jiménez, 2013, Morphological and molecular differentiation of smooth-hound sharks (Genus Mustelus, Family Triakidae) from the Gulf of California, J. Appl. Ichthyol., 29, 268, 10.1111/jai.12042
Phillips, 2017, Contrasting population structures of three Pristis sawfishes with different patterns of habitat use, Mar. Freshwat. Res., 68, 452, 10.1071/MF15427
Plank, 2010, Population genetic structure of the round stingray Urobatis halleri (Elasmobranchii: Rajiformes) in southern California and the Gulf of California, J. Fish Biol., 77, 329, 10.1111/j.1095-8649.2010.02677.x
Plata Zepeda, 2018, Economic assessment of tourism based on shark-seeing and diving as a more profitable activity than commercial fishing, 205
Portnoy, 2012, Molecular markers: progress and prospects for understanding reproductive ecology in elasmobranchs, J. Fish Biol., 80, 1120, 10.1111/j.1095-8649.2011.03206.x
Portnoy, 2007, Genetic polyandry and sexual conflict in the sandbar shark, Carcharhinus plumbeus, in the western North Atlantic and Gulf of Mexico, Mol. Ecol., 16, 187, 10.1111/j.1365-294X.2006.03138.x
Portnoy, 2008, Effective size closely approximates the census size in the heavily exploited western Atlantic population of the sandbar shark, Carcharhinus plumbeus, Conserv. Genet., 10, 1697, 10.1007/s10592-008-9771-2
Pouca, 2019, Quantity discrimination in Port Jackson sharks incubated under elevated temperatures, Behav. Ecol. Sociobiol., 73, 93, 10.1007/s00265-019-2706-8
Pratt, 2001, A review of elasmobranch reproductive behavior with a case study on the nurse shark, Ginglymostoma cirratum, 157
Primmer, 2009, From conservation genetics to conservation genomics, Ann. N. Y. Acad. Sci., 1162, 357, 10.1111/j.1749-6632.2009.04444.x
Ramírez-Amaro, 2017, Population structure of the Pacific angel shark (Squatina californica) along the northwestern coast of Mexico based on the mitochondrial DNA control region, Cienc. Mar., 43, 69, 10.7773/cm.v43i1.2692
Ramírez-Macías, 2007, Variations of the mitochondrial control region sequence in whale sharks (Rhincodon typus) from the Gulf of California, Mexico. Fish. Res., 84, 87, 10.1016/j.fishres.2006.11.038
Razgour, 2019, Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections, Proc. Natl. Acad. Sci., 116, 10418, 10.1073/pnas.1820663116
Rees, 2014, REVIEW: the detection of aquatic animal species using environmental DNA—a review of eDNA as a survey tool in ecology, J. Appl. Ecol., 51, 1450, 10.1111/1365-2664.12306
Reid-Anderson, 2019, Effective population size of the critically endangered east Australian grey nurse shark Carcharias taurus, Mar. Ecol. Prog. Ser., 610, 137, 10.3354/meps12850
Reis, 2016, Fish biodiversity and conservation in South America, J. Fish Biol., 89, 12, 10.1111/jfb.13016
Richards, 2013, Characterization of the heart transcriptome of the white shark (Carcharodon carcharias), BMC Genomics, 14, 697, 10.1186/1471-2164-14-697
Rick, 2002, Evaluating the economic significance of sharks, skates, and rays (Elasmobranchs) in prehistoric economies, J. Archaeol. Sci., 29, 111, 10.1006/jasc.2000.0637
Riginos, 2016, Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies, Curr. Zool., 62, 581, 10.1093/cz/zow067
Rodrigues-Filho, 2012, Shark DNA forensics: applications and impacts on genetic diversity, 269
Rodríguez-Correa, 2017, Perspectivas de la Ecología molecular en un país megadiverso, Rev. Mex. Biodivers., 88, 3, 10.1016/j.rmb.2017.10.002
Rossouw, 2016, Assessing multiple paternity in three commercially exploited shark species: Mustelus mustelus, Carcharhinus obscurus and Sphyrna lewini, J. Fish Biol., 89, 1125, 10.1111/jfb.12996
Sandoval-Castillo, 2015, Metapopulation structure informs conservation management in a heavily exploited coastal shark (Mustelus henlei), Mar. Ecol. Prog. Ser., 533, 191, 10.3354/meps11395
Sandoval-Castillo, 2019, Oceanographic heterogeneity drives ecological radiation in elasmobranchs, J. Biogeogr.
Sandoval-Castillo, 2011, Deep mitochondrial divergence in Baja California populations of an aquilopelagic elasmobranch: the golden cownose ray, J. Hered., 102, 269, 10.1093/jhered/esr004
Sandoval-Castillo, 2004, Cryptic isolation of Gulf of California shovelnose guitarfish evidenced by mitochondrial DNA, Mar. Biol., 145, 983, 10.1007/s00227-004-1378-7
Sandoval-Castillo, 2018, Seascape genomics reveals adaptive divergence in a connected and commercially important mollusc, the greenlip abalone (Haliotis laevigata), along a longitudinal environmental gradient, Mol. Ecol., 27, 1603, 10.1111/mec.14526
Sandoval-Castillo, 2019, Gene Expression Responses to Heat Stress to Future Climate in Australian Rainbowfishes, Clim. Change.
Schmidt, 2009, Low genetic differentiation across three major ocean populations of the whale shark, Rhincodon typus, PloS one, 4, 10.1371/journal.pone.0004988
Schultz, 2008, Global phylogeography and seascape genetics of the lemon sharks (genus Negaprion), Mol. Ecol., 17, 5336, 10.1111/j.1365-294X.2008.04000.x
Shafer, 2013, Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology, Ecol. Lett., 16, 940, 10.1111/ele.12120
Shokralla, 2012, Next-generation sequencing technologies for environmental DNA research, Mol. Ecol., 21, 1794, 10.1111/j.1365-294X.2012.05538.x
Shokralla, 2015, A DNA mini-barcoding system for authentication of processed fish products, Sci. Rep., 5, 15894, 10.1038/srep15894
Sigsgaard, 2016, Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA, Nat. Ecol. Evol., 1, 0004, 10.1038/s41559-016-0004
Sigsgaard, 2017, Seawater environmental DNA reflects seasonality of a coastal fish community, Mar. Biol., 164, 128, 10.1007/s00227-017-3147-4
Smith, 2009, Morphometric convergence and molecular divergence: the taxonomic status and evolutionary history of Gymnura crebripunctata and Gymnura marmorata in the eastern Pacific Ocean, J. Fish Biol., 75, 761, 10.1111/j.1095-8649.2009.02300.x
Smith, 2012, Wolbachia and DNA barcoding insects: patterns, potential, and problems, PLoS One, 7
Snelson, 2009, The reproductive biology of pelagic elasmobranchs, 24
Stein, 2018, Global priorities for conserving the evolutionary history of sharks, rays and chimaeras, Nat. Ecol. Evol., 2, 288, 10.1038/s41559-017-0448-4
Steinke, 2017, DNA analysis of traded shark fins and mobulid gill plates reveals a high proportion of species of conservation concern, Sci. Rep., 7, 9505, 10.1038/s41598-017-10123-5
Stelbrink, 2010, Molecular systematics and global phylogeography of angel sharks (genus Squatina), Mol. Phylogen. Evol., 54, 395, 10.1016/j.ympev.2009.07.029
Stevens, 2000, The effects of fishing on sharks, rays, and chimaeras (chondrichthyans), and the implications for marine ecosystems, ICES J. Mar. Sci., 57, 476, 10.1006/jmsc.2000.0724
Tarula-Marin, 2019, First record of mating system of the gray smooth-hound shark (Mustelus californicus) in the Gulf of California: genetic monogamy in young females, J. Mar. Biol. Assoc. U.K.
Trejo, 2005
van der Valk, 2019, Historical genomes reveal the genomic consequences of recent population decline in Eastern gorillas, Curr. Biol., 29, 165, 10.1016/j.cub.2018.11.055
Vella, 2017, Population genetics of the deep-sea bluntnose sixgill shark, Hexanchus griseus, revealing spatial genetic heterogeneity, Mar. Genom., 36, 25, 10.1016/j.margen.2017.05.012
Veríssimo, 2017, World without borders—genetic population structure of a highly migratory marine predator, the blue shark (Prionace glauca), Ecol. Evol., 7, 4768, 10.1002/ece3.2987
Vignaud, 2014, Genetic structure of populations of whale sharks among ocean basins and evidence for their historic rise and recent decline, Mol. Ecol., 23, 2590, 10.1111/mec.12754
Wang, 2009, RNA-Seq: a revolutionary tool for transcriptomics, Nat. Rev. Genet., 10, 57, 10.1038/nrg2484
Ward, 2008, DNA barcoding Australasian chondrichthyans: results and potential uses in conservation, Mar. Freshwat. Res., 59, 57, 10.1071/MF07148
Wetherbee, 2004, Food consumption and feeding habits, 225
White, 2010, The status of chondrichthyan conservation in the Indo-Australasian region, J. Fish Biol., 76, 2090, 10.1111/j.1095-8649.2010.02654.x
White, 2017, Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family, Zool. J. Linn. Soc., 182, 50, 10.1093/zoolinnean/zlx018
Willing, 2012, Estimates of genetic differentiation measured by FST do not necessarily require large sample sizes when using many SNP markers, PloS one, 7, 10.1371/journal.pone.0042649
Worm, 2012, The future of fish, Trends Ecol. Evol., 27, 594, 10.1016/j.tree.2012.07.005
Worm, 2013, Global catches, exploitation rates, and rebuilding options for sharks, Mar. Policy, 40, 194, 10.1016/j.marpol.2012.12.034
Yates, 2015, Spatio-temporal occurrence patterns of young sharks in tropical coastal waters, Estuar. Coasts, 38, 2019, 10.1007/s12237-015-9952-4
Young, 2016, Patterns, causes, and consequences of anthropocene defaunation, Annu. Rev. Ecol. Evol. Syst., 47, 333, 10.1146/annurev-ecolsys-112414-054142