S. Hammes-Schiffer, S.J. Benkovic, Annu. Rev. Biochem. 75, 519 (2006)
K. Eom, Multiscale Sci. Eng. 1, 1 (2019)
M. Karplus, G.A. Petsko, Nature 347, 631 (1990)
R.O. Dror, R.M. Dirks, J.P. Grossman, H. Xu, D.E. Shaw, Annu. Rev. Biophys. 41, 429 (2012)
V. Tozzini, Curr. Opin. Struct. Biol. 15, 144 (2005)
P. Sherwood, B.R. Brooks, M.S.P. Sansom, Curr. Opin. Struct. Biol. 18, 630 (2008)
K. Eom, G. Yoon, J.-I. Kim, S. Na, J. Comput. Theor. Nanosci. 7, 1210 (2010)
G.A. Voth, Coarse-Graining of Condensed Phase and Biomolecular Systems (CRC Press, Boca Raton, 2009)
M.M. Tirion, Phys. Rev. Lett. 77, 1905 (1996)
I. Bahar, T.R. Lezon, L.-W. Yang, E. Eyal, Annu. Rev. Biophys. 39, 23 (2010)
A.R. Atilgan et al., Biophys. J. 80, 505 (2001)
I. Bahar, A.J. Rader, Curr. Opin. Struct. Biol. 15, 586 (2005)
H. Jang, S. Na, K. Eom, J. Chem. Phys. 131, 245106 (2009)
K. Eom, S.-C. Baek, J.-H. Ahn, S. Na, J. Comput. Chem. 28, 1400 (2007)
M.Y. Lu, J.P. Ma, Biophys. J. 89, 2395 (2005)
F. Tama, Y.H. Sanejouand, Protein Eng. 14, 1 (2001)
I. Bahar, C. Chennubhotla, D. Tobi, Curr. Opin. Struct. Biol. 17, 633 (2007)
D. Tobi, I. Bahar, Proc. Natl. Acad. Sci. USA 102, 18908 (2005)
A. Bakan, I. Bahar, Proc. Natl. Acad. Sci. USA 106, 14349 (2009)
O. Miyashita, J.N. Onuchic, P.G. Wolynes, Proc. Natl. Acad. Sci. USA 100, 12570 (2003)
M. Ikeguchi, J. Ueno, M. Sato, A. Kidera, Phys. Rev. Lett. 94, 078102 (2005)
B. Isin, K. Schulten, E. Tajkhorshid, I. Bahar, Biophys. J. 95, 789 (2008)
N. Kantarci-Carsibasi, T. Haliloglu, P. Doruker, Biophys. J. 95, 5862 (2008)
M.K. Kim, W. Li, B.A. Shapiro, G.S. Chirikjian, J. Biomol. Struct. Dyn. 21, 395 (2003)
M.K. Kim, R.L. Jernigan, G.S. Chirikjian, Biophys. J. 89, 43 (2005)
K. Arora, C.L. Brooks III, Proc. Natl. Acad. Sci. USA 104, 18496 (2007)