Concurrent Drought Stress and Vascular Pathogen Infection Induce Common and Distinct Transcriptomic Responses in Chickpea

Abd El-Rahim, 1998, Alterations in transpiration and stem vascular tissues of two maize cultivars under conditions of water stress and late wilt disease., Plant Pathol., 47, 216, 10.1046/j.1365-3059.1998.00211.x

Achuo, 2006, Influence of drought, salt stress and abscisic acid on the resistance of tomato to Botrytis cinerea and Oidium neolycopersici., Plant Pathol., 55, 178, 10.1111/j.1365-3059.2005.01340.x

Bartels, 2009, MAP KINASE PHOSPHATASE1 and PROTEIN TYROSINE PHOSPHATASE1 are repressors of salicylic acid synthesis and SNC1-mediated responses in Arabidopsis., Plant Cell, 21, 2884, 10.1105/tpc.109.067678

Bhaskara, 2012, Unique drought resistance functions of the highly ABA-induced clade a protein phosphatase 2Cs., Plant Physiol., 160, 379, 10.1104/pp.112.202408

Bhuiyan, 2009, Role of lignification in plant defense., Plant Signal. Behav., 4, 158, 10.4161/psb.4.2.7688

Bidzinski, 2016, Transcriptional basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae., Front. Plant Sci., 7, 10.3389/fpls.2016.01558

Bonawitz, 2010, The genetics of lignin biosynthesis?: connecting genotype to phenotype., Annu. Rev. Genet., 44, 337, 10.1146/annurev-genet-102209-163508

Brown, 2011, Arabidopsis genes IRREGULAR XYLEM (IRX15) and IRX15L encode DUF579-containing proteins that are essential for normal xylan deposition in the secondary cell wall., Plant J., 66, 401, 10.1111/j.1365-313X.2011.04501.x

Chan, 2016, RDM4 modulates cold stress resistance in Arabidopsis partially through the CBF-mediated pathway., New Phytol., 209, 1527, 10.1111/nph.13727

Chen, 2014, Dynamics in the resistant and susceptible peanut (Arachis hypogaea L.) root transcriptome on infection with the Ralstonia solanacearum., BMC Genomics, 15, 10.1186/1471-2164-15-1078

Choi, 2013, Water deficit modulates the response of Vitis vinifera to the Pierce’s disease pathogen Xylella fastidiosa., Mol. Plant Microbe Interact., 26, 1, 10.1094/MPMI-09-12-0217-R

De Souza, 2013, Morphophysiology, morphoanatomy, and grain yield under field conditions for two maize hybrids with contrasting response to drought stress., Acta Physiol. Plant., 35, 3201, 10.1007/s11738-013-1355-1

Dempsey, 2011, Salicylic acid biosynthesis and metabolism., Arabidopsis Book, 9, 10.1199/tab.0156

Denancé, 2013, Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and tryptophan metabolism., Plant J., 73, 225, 10.1111/tpj.12027

Dittrich, 1991, Molecular cloning, expression, and induction of berberine bridge enzyme, an enzyme essential to the formation of benzophenanthridine alkaloids in the response of plants to pathogenic attack., Proc. Natl. Acad. Sci. U.S.A., 88, 9969, 10.1073/pnas.88.22.9969

Douglas, 1981, The relationship between vascular alterations and symptom development in Verticillium wilt of Chrysanthemum., Physiol. Plant Pathol., 19, 31, 10.1016/S0048-4059(81)80005-7

Garcia, 2008, A small plant-specific protein family of ABI five binding proteins (AFPs) regulates stress response in germinating Arabidopsis seeds and seedlings., Plant Mol. Biol., 67, 643, 10.1007/s11103-008-9344-2

Gaur, 2012, Impact of genomic technologies on chickpea breeding strategies., Agronomy, 2, 199, 10.3390/agronomy2030199

Genin, 2010, Molecular traits controlling host range and adaptation to plants in Ralstonia solanacearum., New Phytol., 187, 920, 10.1111/j.1469-8137.2010.03397.x

Gupta, 2016, Global transcriptional analysis reveals unique and shared responses in Arabidopsis thaliana exposed to combined drought and pathogen stress., Front. Plant Sci., 7, 10.3389/fpls.2016.00686

Hatmi, 2015, Drought stress tolerance in grapevine involves activation of polyamine oxidation contributing to improved immune response and low susceptibility to Botrytis cinerea., J. Exp. Bot., 66, 775, 10.1093/jxb/eru436

Hernández-Blanco, 2007, Impairment of cellulose synthases required for Arabidopsis secondary cell wall formation enhances disease resistance., Plant Cell, 19, 890, 10.1105/tpc.106.048058

Hwang, 2011, Microarray analysis of the transcriptome for bacterial wilt resistance in pepper (Capsicum annuum L.)., Notulae Botanicae Horti Agrobotanici Cluj Napoca, 39, 49, 10.15835/nbha3926820

Ishihara, 2012, Transcriptome analysis of quantitative resistance-specific response upon Ralstonia solanacearum infection in tomato., PLoS ONE, 7, 10.1371/journal.pone.0046763

Kavak, 2011, Trends of sudden wilt syndrome in sesame plots irrigated with delayed intervals., Afr. J. Microbiol. Res., 5, 1837, 10.5897/AJMR11.289

Kendziorski, 2005, On the utility of pooling biological samples in microarray experiments., PNAS, 102, 4252, 10.1073/pnas.0500607102

Kubasek, 1992, Regulation of flavonoid biosynthetic genes in germinating Arabidopsis seedlings., Plant Cell, 4, 1229, 10.1105/tpc.4.10.1229

Liu, 2014, bHLH122 is important for drought and osmotic stress resistance in Arabidopsis and in the repression of ABA catabolism., New Phytol., 201, 1192, 10.1111/nph.12607

Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2 (-Delta Delta C(T)) method., Methods, 25, 402, 10.1006/meth.2001.1262

Mayek-Péreza, 2002, Water relations, histopathology and growth of common bean (Phaseolus vulgaris l.) during pathogenesis of Macrophomina phaseolina under drought stress., Physiol. Mol. Plant Pathol., 60, 185, 10.1006/pmpp.2001.0388

McElrone, 2001, Effects of water stress on symptomatology and growth of Parthenocissus quinquefolia infected by Xylella fastidiosa., Plant Dis., 85, 1160, 10.1094/PDIS.2001.85.11.1160

Mcfarlane, 2014, The cell biology of cellulose synthesis., Annu. Rev. Plant Biol., 65, 69, 10.1146/annurev-arplant-050213040240

Mohr, 2003, Abscisic acid influences the susceptibility of Arabidopsis thaliana to Pseudomonas syringae pv.tomato and Peronospora parasitica., Funct. Plant Biol., 30, 461, 10.1071/FP02231

Mortimer, 2010, Absence of branches from xylan in Arabidopsis gux mutants reveals potential for simplification of lignocellulosic biomass., Proc. Natl. Acad. Sci. U.S.A, 107, 17409, 10.1073/pnas.1005456107

Narancio, 2013, Insights on gene expression response of a characterized resistant genotype of Solanum commersonii Dun against Ralstonia solanacearum., J. Plant Pathol., 136, 823, 10.1007/s10658-013-0210-y

Nene, 2012, Field Diagnosis of Chickpea Diseases and Their Control. Information Bulletin No. 28 (revised). Technical Report.

Ochola, 2015, Effects of water stress on the development of banana Xanthomonas wilt disease., Plant Pathol., 64, 552, 10.1111/ppa.12281

Olson, 1990, Effects of drought stress and infection by maize dwarf mosaic virus on sweet corn., Plant Dis., 74, 147, 10.1094/PD-74-0147

Pennypacker, 1991, Impact of drought stress on the expression of resistance to Verticillium albo-atrum in Alfalfa., Phytopathology, 81, 1014, 10.1094/Phyto-81-1014

Prasath, 2014, Comparison of the transcriptomes of ginger (Zingiber officinale Rosc.) and mango ginger (Curcuma amada Roxb.) in response to the bacterial wilt infection., PLoS ONE, 9, 10.1371/journal.pone.0099731

Prasch, 2013, Simultaneous application of heat, drought, and virus to Arabidopsis plants reveals significant shifts in signaling networks., Plant Physiol., 162, 1849, 10.1104/pp.113.221044

Ramegowda, 2013, Drought stress acclimation imparts tolerance to Sclerotinia sclerotiorum and Pseudomonas syringae in Nicotiana benthamiana., Int. J. Mol. Sci., 14, 9497, 10.3390/ijms14059497

Rizhsky, 2004, When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress., Plant Physiol., 134, 1683, 10.1104/pp.103.033431.1

Růžička, 2015, Xylem development – from the cradle to the grave., New Phytol., 207, 519, 10.1111/nph.13383

Rybel, 2016, Plant vascular development?: from early specification to differentiation., Nat. Rev. Mol. Cell Biol., 17, 30, 10.1038/nrm.2015.6

Scheller, 2010, Hemicelluloses., Annu. Rev. Plant Biol., 61, 263, 10.1146/annurev-arplant-042809-112315

Schmelzer, 1989, Temporal and spatial patterns of gene expression around sites of attempted fungal infection in parsley leaves., Plant Cell, 1, 993, 10.1105/tpc.1.10.993

Schulze-Lefert, 2004, Knocking on the heaven’s wall: pathogenesis of and resistance to biotrophic fungi at the cell wall., Curr. Opin. Plant Biol., 7, 377, 10.1016/j.pbi.2004.05.004

Singh, 2015, ABA inducible rice protein phosphatase 2C confers ABA insensitivity and abiotic stress tolerance in Arabidopsis., PLoS ONE, 10, 10.1371/journal.pone.0125168

Sinha, 2016, Understanding the impact of drought on foliar and xylem invading bacterial pathogen stress in chickpea., Front. Plant Sci., 7, 10.3389/fpls.2016.00902

Somerville, 2004, Toward a systems approach to understanding plant cell walls., Curr. Opin. Plant Biol., 7, 2206, 10.1016/j.pbi.2004.05.004

Suzuki, 2005, Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c., Plant Physiol., 139, 1313, 10.1104/pp.105.070110

Suzuki, 2011, Identification of the MBF1 heat-response regulon of Arabidopsis thaliana., Plant J., 66, 844, 10.1111/j.1365-313X.2011.04550.x

Taylor-Teeples, 2015, An Arabidopsis gene regulatory network for secondary cell wall synthesis., Nature, 517, 571, 10.1038/nature14099

Tsuda, 2004, Structure and expression analysis of three subtypes of Arabidopsis MBF1 genes., Biochim. Biophys. Acta, 1680, 1, 10.1016/j.bbaexp.2004.08.004

Vanitha, 2009, Variations in defense related enzyme activities in tomato during the infection with bacterial wilt pathogen., J. Plant Interact., 3, 245, 10.1080/17429140802032863

Verma, 2015, CTDB: an integrated chickpea transcriptome database for functional and applied genomics. PLoS ONE, 10, 10.1371/journal.pone.0136880

Vriet, 2013, From squalene to brassinolide: the steroid metabolic and signaling pathways across the plant kingdom., Mol. Plant, 6, 1738, 10.1093/mp/sst096

Xu, 2011, Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry., J. Exp. Bot., 62, 5607, 10.1093/jxb/err245

Yadeta, 2013, The xylem as battleground for plant hosts and vascular wilt pathogens., Front. Plant Sci., 4, 10.3389/fpls.2013.00097

Yang, 2012, A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice., J. Exp. Bot., 63, 2541, 10.1093/jxb/err431

Zhang, 2015, Multifaceted regulations of gateway enzyme phenylalanine ammonia-lyase in the biosynthesis of phenylpropanoids., Mol. Plant, 8, 17, 10.1016/j.molp.2014.11.001

Zhang, 2013, Ectopic expression of a novel ser/thr protein kinase from cotton (Gossypium barbadense), enhances resistance to Verticillium dahliae infection and oxidative stress in Arabidopsis., Plant Cell Rep., 32, 1703, 10.1007/s00299-013-1481-7

Zhao, 2013, Laccase is necessary and nonredundant with peroxidase for lignin polymerization during vascular development in Arabidopsis., Plant Cell, 25, 3976, 10.1105/tpc.113.117770

Zuluaga, 2015, Transcriptome responses to Ralstonia solanacearum infection in the roots of the wild potato Solanum commersonii., BMC Genomics, 16, 10.1186/s12864-015-1460-1