Complete genome sequence of Siansivirga zeaxanthinifaciens CC-SAMT-1T, a flavobacterium isolated from coastal surface seawater
Tóm tắt
Từ khóa
Tài liệu tham khảo
Abell, 2005, Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean, FEMS Microbiol. Ecol., 51, 265, 10.1016/j.femsec.2004.09.001
Bauer, 2006, Whole genome analysis of the marine Bacteroidetes ‘Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter, Environ. Microbiol., 8, 2201, 10.1111/j.1462-2920.2006.01152.x
Chan, 2009, Functional analysis of three sulfide:quinone oxidoreductase homologs in Chlorobaculum tepidum, J. Bacteriol., 191, 1026, 10.1128/JB.01154-08
Fankhauser, 2001, The phytochromes, a family of Red/Far-red absorbing photoreceptors, J. Biol. Chem., 276, 11453, 10.1074/jbc.R100006200
Gomelsky, 2002, BLUF: a novel FAD-binding domain involved in sensory transduction in microorganisms, Trends Biochem. Sci., 27, 497, 10.1016/S0968-0004(02)02181-3
Gómez-Consarnau, 2007, Light stimulates growth of proteorhodopsin-containing marine Flavobacteria, Nature, 445, 210, 10.1038/nature05381
González, 2008, Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria), Proc. Natl. Acad. Sci. U. S. A., 105, 8724, 10.1073/pnas.0712027105
González, 2011, Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134, Appl. Environ. Microbiol., 77, 8676, 10.1128/AEM.06152-11
Grant, 2012, Comparing thousands of circular genomes using the CGView Comparison Tool, BMC Genomics, 13, 202, 10.1186/1471-2164-13-202
Gregersen, 2011, Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria, Front. Microbiol., 2
Hameed, 2012, Siansivirga zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing member of the family Flavobacteriaceae isolated from coastal seawater of Taiwan, FEMS Microbiol. Lett., 333, 37, 10.1111/j.1574-6968.2012.02596.x
Hitomi, 2000, Bacterial cryptochrome and photolyase: characterization of two photolyase-like genes of Synechocystis sp. PCC6803, Nucleic Acids Res., 28, 2353, 10.1093/nar/28.12.2353
Inoue, 2013, A light-driven sodium ion pump in marine bacteria, Nat. Commun., 4
Kirchman, 2002, The ecology of Cytophaga-Flavobacteria in aquatic environments, FEMS Microbiol. Ecol., 39, 91
Klassen, 2010, Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics, PLOS One, 5
Mann, 2013, The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides, Appl. Environ. Microbiol., 79, 6813, 10.1128/AEM.01937-13
Park, 2014, Siansivirga jejuensis [corrected] sp. nov., isolated from seawater of Jeju Island in Korea and emendation of the genus Siansivirga, Antonie Van Leeuwenhoek, 106, 763, 10.1007/s10482-014-0246-9
Pinhassi, 2004, Changes in bacterioplankton composition under different phytoplankton regimens, Appl. Environ. Microbiol., 70, 6753, 10.1128/AEM.70.11.6753-6766.2004
Price, 2004, Identification of a SulP-type bicarbonate transporter in marine cyanobacteria, Proc. Natl. Acad. Sci. U. S. A., 101, 18228, 10.1073/pnas.0405211101
Shindo, 2007, Rare carotenoids, (3R)-saproxanthin and (3R,2′ S)-myxol, isolated from novel marine bacteria (Flavobacteriaceae) and their antioxidative activities, Appl. Microbiol. Biotechnol., 74, 1350, 10.1007/s00253-006-0774-y
Sun, 2016, Isolation and complete genome sequence of Algibacter alginolytica sp. nov., a novel seaweed-degrading Bacteroidetes bacterium with diverse putative polysaccharide utilization loci, Appl. Environ. Microbiol., 82, 2975, 10.1128/AEM.00204-16
Takatani, 2014, Identification of a novel carotenoid, 2 '-isopentenylsaproxanthin, by Jejuia pallidilutea strain 11shimoA1 and its increased production under alkaline condition, Appl. Microbiol. Biotechnol., 98, 6633, 10.1007/s00253-014-5702-y
Taylor, 1999, PAS domains: internal sensors of oxygen, redox potential, and light, Microbiol. Mol. Biol. Rev., 63, 479, 10.1128/MMBR.63.2.479-506.1999
Yilmaz, 2011, Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications, Nat. Biotechnol., 29, 415, 10.1038/nbt.1823