Compilation of Pseudomonad Sequences Present in a Database on the Structure of Ribosomal RNA

Anders, 1995, Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and K 740 and their description as new members of the genera Thauera, as Thauera aromatica sp, nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria. Int. J. Syst. Bacteriol, 45, 327 Bennasar, 1996, 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp, nov. Int. J. Syst. Bacteriol, 46, 200, 10.1099/00207713-46-1-200 Benson, 1996, Genbank, Nucleic Acids Res, 24, 1, 10.1093/nar/24.1.1 Bowman, 1993, Telluria mixta (Pseudomonas mixta, Bowman Sly, and Hayward 1988) gen. nov., comb. nov., and Telluria chitinolytica sp. nov.. soil-dwelling organisms which actively degrade polysaccharides, Int. J. Syst. Bacteriol, 43, 120, 10.1099/00207713-43-1-120 De Rijk, 1993, DCSE, an interactive tool for sequence alignment and secondary structure research, Comput. Applic. Biosci, 9, 735 De Rijk, 1994, Database on the structure of large ribosomal subunit RNA, Nucleic Acids Res, 22, 3495, 10.1093/nar/22.17.3495 De Rijk, 1996, Database on the structure of large ribosomal subunit RNA, Nucleic Acids Res, 24, 92, 10.1093/nar/24.1.92 Dewhirst, 1989, Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison, Int. J. Syst. Bacteriol, 39, 258, 10.1099/00207713-39-3-258 Dewhirst, 1990, Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen, 40, 426 Dobron, 1993, Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio, Int. J. Syst. Bacteriol, 43, 665, 10.1099/00207713-43-4-665 Doolittle, 1994, Tempo, mode, the progenote, and the universal root, Proc. Natl. Acad. Sci. USA, 91, 6721, 10.1073/pnas.91.15.6721 Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678 Gutell, 1994, Lessons from an evolving rRNA 16S and 23S rRNA structures from a comparative perspective, Microbiol. Rev, 58, 10, 10.1128/MMBR.58.1.10-26.1994 Hildebrand, 1994, Pseudomonas flavescens sp, nov., isolated from walnut blight cankers. Int. J. Syst. Bacteriol, 44, 410, 10.1099/00207713-44-3-410 Hoepfl, 1989, The 23S ribosomal RNA higher-order structure of Pseudomonas cepacia and other prokaryotes, Eur. J. Biochem, 185, 355, 10.1111/j.1432-1033.1989.tb15123.x Kersters, K., Ludwig, W., Vancanneyt, M., De Vos, P., Gillis, M., Schleifer, K.-H.: Recent changes in the classification of the pseudomonads: an overview. Syst. Appl. Microbiol. (this issue) Li, 1993, Phylogenetic studies on rRNA group II Pseudomonas using 16S rRNA sequences, J. Appl. Microbiol, 74, 324 Moore, 1996, The determination and comparison of the 16S rRNA gene sequences of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships, Syst. Appl. Microbiol, 196, 478, 10.1016/S0723-2020(96)80021-X Neefs, 1993, Compilation of small ribosomal subunit RNA structures, Nucleic Acids Res, 21, 3025, 10.1093/nar/21.13.3025 Nelles, 1984, Nucleotide sequence of a crustacean 185 ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs, Nucleic Acids Res, 12, 8749, 10.1093/nar/12.23.8749 Rodriguez-Tome, 1996, The European Bioinformatics Institute (EBI) databases, Nucleic Acids Res, 24, 6, 10.1093/nar/24.1.6 Takeuchi, 1994, Phylogenetic evidence for Sphingomonas and Rhizomonas as nonphotosynthetic members of the alpha-4 subclass of the proteobacteria, Int. J. Syst. Bacteriol, 44, 308, 10.1099/00207713-44-2-308 Toschka, 1987, Complete Nucleotide Sequence of a 23S Ribosomal RNA gene from Pseudomonas aeruginosa, Nucleic Acids Res, 15, 7182, 10.1093/nar/15.17.7182 Toschka, 1988, Complete nucleotide sequence of a 16S ribosomal RNA gene from Pseudomonas aeruginosa, Nucleic Acids Res, 16, 2348, 10.1093/nar/16.5.2348 Van de Peer, 1993, TREECON: a software package for the construction and drawing of evolutionary trees, Comput. Applic. Biosci, 9, 177 Van de Peer, 1994, TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment, Comput. Applic. Biosci, 10, 569 Van de Peer, 1996, Database on the structure of small ribosomal subunit RNA, Nucleic Acids Res, 24, 86, 10.1093/nar/24.1.86 Woese, 1987, Bacterial evolution, Microbiol. Rev, 51, 221, 10.1128/MMBR.51.2.221-271.1987 Yabuuchi, 1992, Proposal of Burkholderia gen, nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol. Immunol, 36, 1251 Yamamoto, 1995, PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains, Appl. Environ. Microbiol, 61, 1104, 10.1128/AEM.61.3.1104-1109.1995 Yang, 1985, Mitochondrial origins, Proc. Natl. Acad. Sci. USA, 82, 4443, 10.1073/pnas.82.13.4443