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Asano Y, Compton JE, Church MR (2006) Hydrologic flowpaths influence inorganic and organic nutrient leaching in a forest soil. Biogeochemistry 81:191–204
Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Jones AJ, Weightman AJ (2006) New Screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microb 72:5733–5741
Barns SM, Takala SL, Kuske CR (1999) Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl Environ Microbiol 65:1731–1737
Bastias BA, Anderson IC, Xu Z, Cairney JWG (2007) RNA- and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation. Soil Biol Biochem 39:3108–3114
Brockerhoff EG, Jactel H, Parrotta JA, Quine CP, Sayer J (2008) Plantation forests and biodiversity: oxymoron or opportunity? Biodivers Conserv 17:925–951
Byrd KB, Parker VT, Vogler DR, Cullings KW (2000) The influence of clear-cutting on ectomycorrhizal fungus diversity in a lodgepole pine (Pinus contorta) stand, Yellowstone National Park, Wyoming, and Gallatin National Forest, Montana. Can J Bot-Rev Can Bot 78:149–156
Chan OC, Yang XD, Fu Y, Feng ZL, Sha LQ, Casper P, Zou XM (2006) 16S rRNA gene analyses of bacterial community structures in the soils of evergreen broad-leaved forests in south-west China. FEMS Microb Ecol 58:247–259
Chao A, Ma MC, Yang MCK (1993) Stopping rules and estimation for recapture debugging with unequal failure rates. Biometrika 80:193–201
Chaverri P, Vilchez B (2006) Hypocrealean (Hypocreales, Ascomycota) fungal diversity in different stages of tropical forest succession in Costa Rica. Biotropica 38:531–543
Courty PE, Buee M, Diedhiou AG, Frey-Klett P, Le Tacon F, Rineau F, Turpault MP, Uroz S, Garbaye J (2010) The role of ectomycorrhizal communities in forest ecosystem processes: new perspectives and emerging concepts. Soil Biol Biochem 42:679–698
Curlevski NJA, Xu ZH, Anderson IC, Cairney JWG (2010) Converting Australian tropical rainforest to native Araucariaceae plantations alters soil fungal communities. Soil Biol Biochem 42:14–20
DeFries RS, Rudel T, Uriarte M, Hansen M (2010) Deforestation driven by urban population growth and agricultural trade in the twenty-first century. Nat Geosci 3:178–181
Guerra CA, Snow RW, Hay SI (2006) A global assessment of closed forests, deforestation and malaria risk. Ann Trop Med Parasitol 100:189–204
Hagerman SM, Jones MD, Bradfield GE, Gillespie M, Durall DM (1999) Effects of clear-cut logging on the diversity and persistence of ectomycorrhizae at a subalpine forest. Can J For Res 29:124–134
Heck KL, Vanbelle G, Simberloff D (1975) Explicit calculation of rarefaction diversity measurement and determination of sufficient sample size. Ecology 56:1459–1461
Hiraishi A, Kishimoto N, Kosako Y, Wakao N, Tano T (1995) Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph Acidobacterium-Capsulatum. FEMS Microb Ecol 132:91–94
Jackson CR, Liew KC, Yule CM (2009) Structural and functional changes with depth in microbial communities in a Tropical Malaysian Peat Swamp Forest. Microb Ecol 57:402–412
Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths B, Watling R (2006) Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry 79:201–216
Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163
Lane DJ (1991) 16S/23 SrRNA sequencing. Wiley, New York
Lauber CL, Strickland MS, Bradford MA, Fierer N (2008) The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biol Biochem 40:2407–2415
Lee SM, Chao A (1994) Estimating population-size via sample coverage for closed capture-recapture models. Biometrics 50:88–97
Lei GC, Hanski I (1998) Spatial dynamics of two competing specialist parasitoids in a host metapopulation. J Anim Ecol 67:422–433
Liao CZ, Luo YQ, Fang CM, Li B (2010) Ecosystem carbon stock influenced by plantation practice: implications for planting forests as a measure of climate change mitigation. Plos One 5:e10867
Liao C, Luo Y, Fang C, Chen J, Li B (2011) The effects of plantation practice on soil properties based on the comparison between natural and planted forests: a meta-analysis. Glob Ecol Biogeogr. doi:10.1111/j.1466-8238.2011.00690.x
Lin YT, Huang YJ, Tang SL, Whitman WB, Coleman DC, Chiu CY (2010) Bacterial community diversity in undisturbed perhumid montane forest soils in Taiwan. Microb Ecol 59:369–378
Liu XZ, Wang L (2010) Scientific survey and study of biodiversity on the Lushan Nature Reserve in Jiangxi Province. Science Press, Beijing
Lonsdale D, Pautasso M, Holdenrieder O (2008) Wood-decaying fungi in the forest: conservation needs and management options. Eur J For Res 127:1–22
Lopez-Garcia P, Duperron S, Philippot P, Foriel J, Susini J, Moreira D (2003) Bacterial diversity in hydrothermal sediment and epsilon proteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge. Environ Microbiol 5:961–976
Moscatelli MC, Lagomarsino A, Marinari S, De Angelis P, Grego S (2005) Soil microbial indices as bioindicators of environmental changes in a poplar plantation. Ecol Indic 5:171–179
Norden B, Paltto H (2001) Wood-decay fungi in hazel wood: species richness correlated to stand age and dead wood features. Biol Conserv 101:1–8
Palmer MW (1994) Variation in species richness: towards a unification of hypotheses. Folia Geobot Phytotax 29:511–530
Pan KW, Xu ZH, Blumfield T, Totua S, Lu MX (2008) In situ mineral N-15 dynamics and fate of added (NH4 +)-N15 in hoop pine plantation and adjacent native forest in subtropical Australia. J Soils Sediments 8:398–405
Pawson SM, Brockerhoff EG, Meenken ED, Didham RK (2008) Non-native plantation forests as alternative habitat for native forest beetles in a heavily modified landscape. Biodivers Conserv 17:1127–1148
Pietikainen J, Fritze H (1995) Clear-cutting and prescribed burning in coniferous forest—comparison of effects on soil fungal and total microbial biomass, respiration activity and nitrification. Soil Biol Biochem 27:101–109
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig WG, Peplies J, Glockner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl Acids Res 35:7188–7196
Qualls RG, Haines BL (1991) Geochemistry of dissolved organic nutrients in water percolating through a forest ecosystem. Soil Sci Soc Am J 55:1112–1123
Saitou N, Nei M (1987) The neighbor-joining method—a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541
Shannon CE, Weaver W (1963) The mathematical theory of communication. University of Illinois Press, Urbana, IL
Silveira MLA (2005) Dissolved organic carbon and bioavailability of N and P as indicators of soil quality. Sci Agric 62:502–508
Singh BK, Munro S, Potts JM, Millard P (2007) Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Appl Soil Ecol 36:147–155
Singleton DR, Furlong MA, Rathbun SL, Whitman WB (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67:4374–4376
Smit E, Leeflang P, Glandorf B, van Elsas JD, Wernars K (1999) Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis. Appl Environ Microbiol 65:2614–2621
Trappe JM, Castellano MA (2000) New sequestrate Ascomycota and Basidiomycota covered by the Northwest Forest Plan. Mycotaxon 75:153–179
Tsukamoto J, Sabang J (2005) Soil macro-fauna in an Acacia mangium plantation in comparison to that in a primary mixed dipterocarp forest in the lowlands of Sarawak, Malaysia. Pedobiologia 49:69–80
Usuga JCL, Toro JAR, Alzate MVR, Tapias ADL (2010) Estimation of biomass and carbon stocks in plants, soil and forest floor in different tropical forests. For Ecol Manage 260:1906–1913
van Dijk A, Keenan RJ (2007) Planted forests and water in perspective. For Ecol Manage 251:1–9
Wardle DA, Yeates GW, Barker GM, Bonner KI (2006) The influence of plant litter diversity on decomposer abundance and diversity. Soil Biol Biochem 38:1052–1062
Xu ZH, Ward S, Chen CR, Blumfield T, Prasolova N, Liu JX (2008) Soil carbon and nutrient pools, microbial properties and gross nitrogen transformations in adjacent natural forest and hoop pine plantations of subtropical Australia. J Soils Sediments 8:99–105