Comparative transcriptome analysis of Phascolosoma esculenta under different salinities

Bairoch, 1991, The SWISS-PROT protein sequence data bank, Nucleic Acids Research, 19, 2247, 10.1093/nar/19.suppl.2247 Chen, 2007, Characters of early morphological development of peanutworm (Phascolosoma esculenta), Journal of Oceanography in Taiwan Strait, 26, 395 Chen, 2007, An exploration for the experimental conditions (water, temperature and salinity) to keep Phascolosoma esculenta. in the laboratory temporarily, Journal of Quanzhou Normal University (Natural Science), 25, 95 Conesa, 2008, Blast2GO: A comprehensive suite for functional analysis in plant genomics, International Journal of Plant Genomics, 2008, 1, 10.1155/2008/619832 Deng, 2007, Morphological and histological characteristics of body wall in Phascolosoma esculenta, Fisheries Science, 26, 335 El-Gebali, 2019, The Pfam protein families database in 2019, Nucleic Acids Research, 47, 10.1093/nar/gky995 Garber, 2011, Computational methods for transcriptome annotation and quantification using RNA-seq, Nature Methods, 8, 469, 10.1038/nmeth.1613 Gene Ontology Consortium, 2004, The Gene Ontology (GO) database and informatics resource, Nucleic Acids Research, 32, 10.1093/nar/gkh036 Gu, 2009, Oogenesis of Phascolosoma esculenta: Histological study, Oceanologia et Limnologia Sinica, 40, 283 Hall, 1966, Morphology of North Atlantic sipunculid larvae, American Zoologist, 6, 193 Huerta-cepas, 2016, eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences, Nucleic Acids Research, 44, D286, 10.1093/nar/gkv1248 Ji, 2007, The cells and composition in the coelomic fluid of Phascolosoma esculenta, Fisheries Science, 26, 387 Jin, 2011, Study on the embryonic and larval development of Phascolosoma esculenta, Oceanologia et Limnologia Sinica, 42, 94 Kanehisa, 2000, KEGG: Kyoto Encyclopedia of genes and genomes, Nucleic Acids Research, 28, 27, 10.1093/nar/28.1.27 Lan, 2003, A study on embryonic and larval developments of Sipunculus nudus, Journal of Tropical Oceanography, 22, 70 Lei, 2013, The morphology of the digestive trace of Phascolosoma esculenta, Journal of Biology, 30, 33 Li, 1989, Studies on the genus Phascolosoma (Sipuncula) off the China coasts, Journal of Ocean University of China, 19, 78 Li, 2009, Vol. 25, 1754 Liu, 2013, Molecular evolution and phylogenetic analysis of ferritin of Phascolosoma esculenta, Oceanologia et Limnologia Sinica, 44, 973 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method, Methods, 25, 402, 10.1006/meth.2001.1262 Li, 2002, Feeding ecology progress of the herbivorous copepod, Acta Ecologica Sinica, 22, 593 Long, 2014, Distribution and structural features of Nephridial Cilia in the Sipunculan Phascolosoma esculenta, Chinese Journal of Zoology, 49, 253 Lv, 2013, Transcriptome analysis of Portunus trituberculatus in response to salinity stress provides insights into the molecular basis of osmoregulation, PLoS One, 8, 10.1371/journal.pone.0082155 Mortazavi, 2008, Lorian Schaeffer and Barbara wold mapping and quantifying mammalian transcriptomes by RNA-seq, Methods, 5, 621 Mu, 2013, Morphological features of nephridium in the sipunculan Phascolosoma esculenta under light and electron microscopy, Oceanologia et Limnologia Sinica, 44, 996 Murina, 1965, Some data on the structure of pelagosphere sipunculid larvae, Zoologicheskii Zhurnal, 44, 1610 PruittK, 2005, NCBI reference sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins, Nucleic Acids Research, 33 Rice, 1976, Larval development and metamorphosis in Sipuncula, America Zoologist, 16, 563—571 Rice, 1978, 83—102 Rice, 1986, Factors influencing larval metamorphosis in Golfingia misakiana (Sipuncula), Bulletin of Marine Science, 39, 362—375 Romano, 2012, Osmoregulation in decapod crustaceans: Implications to aquaculture productivity, methods for potential improvement and interactions with elevated ammonia exposure, Aquaculture, 334–337, 12, 10.1016/j.aquaculture.2011.12.035 Su, 2008, Microstructure and ultrastructure of coelomocytes of the sipunculan Phascolosoma esculenta, Acta Zoologica Sinica, 54, 157 Talbot, 2002, The effect of salinity on respiration, excretion, regeneration and production in Ophiophragmus filograneus (Echinodermata: Ophiuroidea), Journal of Experimental Marine Biology and Ecology, 275, 1, 10.1016/S0022-0981(02)00208-3 Wang, 2009, RNA-seq: A revolutionary tool for transcriptomics, Nature Reviews Genetics, 10, 57, 10.1038/nrg2484 Wei, 2000 Wu, 2006, Embryo and larval development of Phasocolosoma esculenta (Chenet Yeh), Acta Zoologica Sinica, 52, 765 Yang, 2016 Yao, 2011 Ying, 2009, Development of germ cells and reproductive biology in the sipunculid Phascolosoma esculenta, Aquaculture Research, 40, 305, 10.1111/j.1365-2109.2008.02093.x Ying, 2010, The fine structure of coelomocytes in the sipunculid Phascolosoma esculenta, Micron, 41, 71, 10.1016/j.micron.2009.08.006 Ying, 2005, The morphological and histological characteristics of digestive tract in Phascolosoma esculenta, Chinese Journal of Zoology, 40, 14 Zhu, 2012, Ultrastructural observation on oogenesis, vitellogenesis and vitelline membrane formation during yolk-synthesizing stage in Phascolosoma esculenta, Oceanologia et Limnologia Sinica, 43, 870 Zhu, 2007, Spermatogenesis and sperm morphology of Phascolosoma esculenta, Acta Zoologica Sinica, 53, 733 Zhu, 2008, Cytological changes of fertilization and early cleavage in Phascolosoma esculenta, Acta Zoologica Sinca, 54, 290