Comparative proteomic analysis of spleen reveals key immune-related proteins in the yak (Bos grunniens) at different growth stages

Yao Zheng1, Jiuqiang Guan2, Li Wang1, Xiaolin Luo2, Xiangfei Zhang2
1Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education and Sichuan Province, Southwest Minzu University, Chengdu 610041, China
2Sichuan Academy of Grassland Sciences, Chengdu, 611731, China

Tài liệu tham khảo

Baker, 2011, NF-κB, inflammation, and metabolic disease, Cell Metab., 13, 11, 10.1016/j.cmet.2010.12.008 Barrington, 2001, Bovine neonatal immunology, Vet. Clin. North Am. Food Anim. Pract., 17, 463, 10.1016/S0749-0720(15)30001-3 Barrios, 2001, Oxygen-induced pulmonary injury in gamma-glutamyl transpeptidase-deficient mice, Lung, 179, 319, 10.1007/s004080000071 Boja, 2012, Mass spectrometry-based targeted quantitative proteomics: achieving sensitive and reproducible detection of proteins, Proteomics, 12, 1093, 10.1002/pmic.201100387 Brenner, 2015, Regulation of tumour necrosis factor signalling: live or let die, Nat. Rev. Immunol., 15, 362, 10.1038/nri3834 Bronte, 2013, The spleen in local and systemic regulation of immunity, Immunity, 39, 806, 10.1016/j.immuni.2013.10.010 Cai, 2010, Hypoxic training increases metabolic enzyme activity and composition of alpha-myosin heavy chain isoform in rat ventricular myocardium, Eur. J. Appl. Physiol., 108, 105, 10.1007/s00421-009-1189-0 Cortés, 2017, Th2 and Th1 responses: clear and hidden sides of immunity against intestinal helminths, Trends Parasitol., 33, 678, 10.1016/j.pt.2017.05.004 Dalle-Donne, 2007, S-glutathionylation in protein redox regulation, Free Radic. Biol. Med., 43, 883, 10.1016/j.freeradbiomed.2007.06.014 De Falco, 2016, Novel non-peptide small molecules preventing IKKβ/NEMO association inhibit NF-κB activation in LPS-stimulated J774 macrophages, Biochem. Pharmacol., 104, 83, 10.1016/j.bcp.2016.01.008 Deponte, 2017, The incomplete glutathione puzzle: just guessing at numbers and figures?, Antioxid. Redox Signal., 27, 1130, 10.1089/ars.2017.7123 Downey, 1999, Phagosomal maturation, acidification, and inhibition of bacterial growth in nonphagocytic cells transfected with FcgammaRIIA receptors, J. Biol. Chem., 274, 28436, 10.1074/jbc.274.40.28436 Doyle, 2004, Toll-like receptors induce a phagocytic gene program through p38, J. Exp. Med., 199, 81, 10.1084/jem.20031237 Edilova, 2018, TRAF1 signaling in human health and disease, Front. Immunol., 9, 2969, 10.3389/fimmu.2018.02969 Ellyard, 2005, Contribution of stromal cells to the migration, function and retention of plasma cells in human spleen: potential roles of CXCL12, IL-6 and CD54, Eur. J. Immunol., 35, 699, 10.1002/eji.200425442 Herre, 2004, Dectin-1 uses novel mechanisms for yeast phagocytosis in macrophages, Blood, 104, 4038, 10.1182/blood-2004-03-1140 Hoffman, 2006, Identification of novel genes and transcription factors involved in spleen, thymus and immunological development and function, Genes Immun., 7, 101, 10.1038/sj.gene.6364270 Jaumouillé, 2016, Molecular mechanisms of phagosome formation, Microbiol. Spectr., 4, 10.1128/microbiolspec.MCHD-0013-2015 Jean, 2002, Gamma-glutamyl transferase deficiency results in lung oxidant stress in normoxia, Am. J. Physiol. Lung Cell. Mol. Physiol., 283, L766, 10.1152/ajplung.00250.2000 Kong, 2014, Study on blood physiological indicators of adaptation to hypoxia in Tibet pig, J. Yunnan Agric. Univ., 29, 297 Kristensen, 2017, Expression of soluble CD83 in plasma from early-stage rheumatoid arthritis patients is not modified by anti-TNF-α therapy, Cytokine, 96, 1, 10.1016/j.cyto.2017.02.017 Kumar, 2011, Glutathione revisited: a vital function in iron metabolism and ancillary role in thiol-redox control, EMBO J., 30, 2044, 10.1038/emboj.2011.105 Li, 2015, Transcriptomic profiling of spleen in grass-fed and grain-fed Angus cattle, PLoS One, 10 Li, 2018, Comparative iTRAQ proteomics revealed proteins associated with horn development in yak, Proteome Sci., 16, 14, 10.1186/s12953-018-0141-9 Lu, 2018, Pentraxins and fc receptor-mediated immune responses, Front. Immunol., 9, 2607, 10.3389/fimmu.2018.02607 Luheshi, 2014, Th1 cytokines are more effective than Th2 cytokines at licensing anti-tumour functions in CD40-activated human macrophages in vitro, Eur. J. Immunol., 44, 162, 10.1002/eji.201343351 Matulova, 2012, Characterization of chicken spleen transcriptome after infection with salmonella enterica serovar enteritidis, PLoS One, 7, 10.1371/journal.pone.0048101 Pallardó, 2009, Role of nuclear glutathione as a key regulator of cell proliferation, Mol. Asp. Med., 30, 77, 10.1016/j.mam.2009.01.001 Paul, 2013, Phagocytosis dynamics depends on target shape, Biophys. J., 105, 1143, 10.1016/j.bpj.2013.07.036 Peng, 2018, Characterization and analysis of whole transcriptome of Giant panda spleens: implying critical roles of long non-coding RNAs in immunity, Cell. Physiol. Biochem., 46, 1065, 10.1159/000488837 Polando, 2018, Mannose receptor (MR) and toll-like receptor 2 (TLR2) influence phagosome maturation during Leishmania infection, Parasite Immunol., 40, 10.1111/pim.12521 Qi, 2017, Study on the blood physiological representation for hypoxia adaptation in yaks and Tibetan cattle, Heilongjiang Anim. Sci. Vet. Med., 517, 9 Rothe, 1994, A novel family of putative signal transducers associated with the cytoplasmic domain of the 75 kDa tumor necrosis factor receptor, Cell, 78, 681, 10.1016/0092-8674(94)90532-0 Ruan, 2019, Proteomic analysis of Tianzhu white yak (Bos grunniens) testis at different sexual developmental stages, Anim. Sci. J., 90, 333, 10.1111/asj.13157 Savitski, 2013, Measuring and managing ratio compression for accurate iTRAQ/TMT quantification, J. Proteome Res., 12, 3586, 10.1021/pr400098r Sughra, 2010, Interaction of the TNFR-receptor associated factor TRAF1 with I-kappa B kinase-2 and TRAF2 indicates a regulatory function for NF-kappa B signaling, PLoS One, 5, 10.1371/journal.pone.0012683 Tao, 2014, Proteomic analysis of the follicular fluid of tianzhu white yak during diestrus, Int. J. Mol. Sci., 15, 4481, 10.3390/ijms15034481 Thomas, 2000, Protection from lethal gram-positive infection by macrophage scavenger receptor-dependent phagocytosis, J. Exp. Med., 191, 147, 10.1084/jem.191.1.147 Wang, 2010, Phagocytosis of fungal agents and yeast via macrophage cell surface scavenger receptors, J. Surg. Res., 164, e273, 10.1016/j.jss.2010.08.039 Wen, 2019, Skeletal muscle proteome analysis provides insights on high altitude adaptation of yaks, Mol. Biol. Rep., 46, 2857, 10.1007/s11033-019-04732-8 Winslow, 2007, The role of hemoglobin oxygen affinity in oxygen transport at high altitude, Respir. Physiol. Neurobiol., 158, 121, 10.1016/j.resp.2007.03.011 Xie, 2013, TRAF molecules in cell signaling and in human diseases, J. Mol. Signal., 8, 7, 10.1186/1750-2187-8-7 Xin, 2020, Proteomics insights into the effects of MSTN on muscle glucose and lipid metabolism in genetically edited cattle, Gen. Comp. Endocrinol., 291, 10.1016/j.ygcen.2019.113237 Xue, 2017, Analysis of the spleen proteome of chickens infected with reticuloendotheliosis virus, Arch. Virol., 162, 1187, 10.1007/s00705-016-3180-5 Yang, 2015, Targeting signaling factors for degradation, an emerging mechanism for TRAF functions, Immunol. Rev., 266, 56, 10.1111/imr.12311 Yang, 2016, Comparative testis proteome dataset between cattleyak and yak, Data Brief, 8, 420, 10.1016/j.dib.2016.05.071 Yang, 2018, Parallel comparative proteomics and phosphoproteomics reveal that cattle myostatin regulates phosphorylation of key enzymes in glycogen metabolism and glycolysis pathway, Oncotarget, 9, 11352, 10.18632/oncotarget.24250 Zhang, 2013, Protein analysis by shotgun/bottom-up proteomics, Chem. Rev., 113, 2343, 10.1021/cr3003533 Zheng, 2017, Quantitative proteome analysis of bovine mammary gland reveals protein dynamic changes involved in peak and late lactation stages, Biochem. Biophys. Res. Commun., 494, 292, 10.1016/j.bbrc.2017.10.038