Comparative phylogeography of Trypanosoma cruzi TCIIc: New hosts, association with terrestrial ecotopes, and spatial clustering

Añez, 2004, Predominance of lineage I among Trypanosoma cruzi isolates from Venezuelan patients with different clinical profiles of acute Chagas’ disease, Trop. Med. Int. Health, 9, 1319, 10.1111/j.1365-3156.2004.01333.x

Añez, 2009, Trypanosoma cruzi congenital transmission in wild bats, Acta Trop., 109, 78, 10.1016/j.actatropica.2008.08.009

Anon., 1999, Recommendations from a satellite meeting, Mem. Inst. Oswaldo Cruz, 94, 429, 10.1590/S0074-02761999000700085

Barnabé, 2001, Trypanosoma cruzi: a considerable phylogenetic divergence indicates that the agent of Chagas disease is indigenous to the native fauna of the United States, Exp. Parasitol., 99, 73, 10.1006/expr.2001.4651

Barrett, 1980, Epidemiological aspects of three Trypanosoma cruzi zymodemes in Bahia State, Brazil, Trans. R. Soc. Trop. Med. Hyg., 74, 84, 10.1016/0035-9203(80)90016-4

Brisse, 2000, Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis, Int. J. Parasitol., 30, 35, 10.1016/S0020-7519(99)00168-X

Brisse, 2001, Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages, Int. J. Parasitol., 31, 1218, 10.1016/S0020-7519(01)00238-7

Brisse, 2003, Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype, Infect. Genet. Evol., 2, 173, 10.1016/S1567-1348(02)00097-7

Cardinal, 2008, Molecular epidemiology of domestic and sylvatic Trypanosoma cruzi infection in rural northwestern Argentina, Int. J. Parasitol., 38, 1533, 10.1016/j.ijpara.2008.04.010

Chapman, 1984, Trypanosoma cruzi from the Paraguayan Chaco: isoenzyme profiles of strains isolated at Makthlawaiya, J. Protozool., 31, 482, 10.1111/j.1550-7408.1984.tb02999.x

Crisante, 2006, Infected dogs as a risk factor in the transmission of human Trypanosoma cruzi infection in western Venezuela, Acta Trop., 98, 247, 10.1016/j.actatropica.2006.05.006

Diosque, 2003, Multilocus enzyme electrophoresis analysis of Trypanosoma cruzi isolates from a geographically restricted endemic area for Chagas’ disease in Argentina, Int. J. Parasitol., 33, 997, 10.1016/S0020-7519(03)00139-5

Fernandes, 2001, A mini-exon multiplex polymerase chain reaction to distinguish the major groups of Trypanosoma cruzi and T. rangeli in the Brazilian Amazon, Trans. R. Soc. Trop. Med. Hyg., 95, 97, 10.1016/S0035-9203(01)90350-5

Ferreira, 2008, A phylogenetic lineage of closely related trypanosomes (Trypanosomatidae, Kinetoplastida) of anurans and Sand Flies (Psychodidae, Diptera) sharing the same ecotopes in Brazilian Amazonia, J. Euk. Microbiol., 55, 427, 10.1111/j.1550-7408.2008.00342.x

Freitas, 2006, Ancestral genomes, sex, and the population structure of Trypanosoma cruzi, PloS Pathog., 2, e24, 10.1371/journal.ppat.0020024

Gaunt, 2000, The ecotopes and evolution of triatomine bugs (triatominae) and their associated trypanosomes, Mem. Inst. Oswaldo Cruz, 95, 557, 10.1590/S0074-02762000000400019

Gürtler, 2007, Domestic dogs and cats as sources of Trypanosoma cruzi infection in rural northwestern Argentina, Parasitology, 134, 69, 10.1017/S0031182006001259

Herrera, 2005, Trypanosoma cruzi infection in wild mammals of the National Park ‘Serra da Capivara’ and its surroundings (Piaui, Brazil), an area endemic for Chagas disease, Trans. R. Soc. Trop. Med. Hyg., 99, 379, 10.1016/j.trstmh.2004.07.006

Herrera, 2007, Identifying four Trypanosoma cruzi I isolate haplotypes from different geographic regions in Colombia, Infect. Genet. Evol., 7, 535, 10.1016/j.meegid.2006.12.003

Huelsenbeck, 2001, MRBAYES: Bayesian inference of phylogenetic trees, Bioinformatics, 17, 754, 10.1093/bioinformatics/17.8.754

Kjos, 2008, Distribution and characterization of canine Chagas disease in Texas, Vet. Parasitol., 152, 249, 10.1016/j.vetpar.2007.12.021

Lisboa, 2006, Stable infection of primates with Trypanosoma cruzi I and II, Parasitology, 133, 603, 10.1017/S0031182006000722

Llewellyn, 2009, The epidemiology of Trypanosoma cruzi TCI: genome-wide microsatellite analysis reveals phlyogeographic population structuring and specific genotypes associated with human infection, PloS Pathog., 5, e1000410, 10.1371/journal.ppat.1000410

Machado, 2001, Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi, Proc. Natl. Acad. Sci. U.S.A., 19, 7396, 10.1073/pnas.121187198

Maia da Silva, 2004, Randomly amplified polymorphic DNA analysis of Trypanosoma rangeli and allied species from human, monkeys and other sylvatic mammals of the Brazilian Amazon disclosed a new group and a species-specific marker, Parasitology, 128, 283, 10.1017/S0031182003004554

Maia da Silva, 2004, Phylogeny, taxonomy and grouping of Trypanosoma rangeli isolates from man, triatomines and sylvatic mammals from widespread geographical origin based on SSU and ITS ribosomal sequences, Parasitology, 129, 549, 10.1017/S0031182004005931

Maia da Silva, 2008, Infection rates and genotypes of Trypanosoma rangeli and Trypanosoma cruzi infecting free-ranging Saguinus bicolor (Callitrichidae), a critically endangered primate of the Amazon Rainforest, Acta Trop., 107, 168, 10.1016/j.actatropica.2008.05.015

Maia da Silva, 2009, Trypanosoma rangeli isolates of bats from Central Brazil: genotyping and phylogenetic analysis enable description of a new lineage using spliced-leader gene sequences, Acta Trop., 109, 199, 10.1016/j.actatropica.2008.11.005

Marcili, 2009, Trypanosoma cruzi in Brazilian Amazonia: lineages TCI and TCIIa in wild primates, Rhodnius spp. and in humans with Chagas disease associated with oral transmission, Int. J. Parasitol., 39, 615, 10.1016/j.ijpara.2008.09.015

Marcili, 2009, A new genotype of Trypanosoma cruzi associated with bats evidenced by phylogenetic analyses using SSU rDNA, cytochrome b and Histone H2B genes and genotyping on ITS1 rDNA, Parasitology, 136, 641, 10.1017/S0031182009005861

Martins, 2008, Rural Triatoma rubrovaria from southern Brazil harbors Trypanosoma cruzi of lineage IIc, Am. J. Trop. Med. Hyg., 79, 427, 10.4269/ajtmh.2008.79.427

Mendonça, 2002, Two main clusters within Trypanosoma cruzi zymodeme 3 are defined by distinct regions of the ribosomal RNA cistron, Parasitology, 124, 177, 10.1017/S0031182001001172

Miles, 1978, Isozymic heterogeneity of Trypanosoma cruzi in the first autochthonous patients with Chagas disease in Amazonian Brazil, Nature, 27, 819, 10.1038/272819a0

Miles, 1981, Chagas disease in the Amazon Basin: II. The distribution of Trypanosoma cruzi zymodemes 1 and 3 in Pará State, north Brazil, Trans. R. Soc. Trop. Med. Hyg., 75, 667, 10.1016/0035-9203(81)90145-0

Miles, 1981, Do radically dissimilar Trypanosoma cruzi strains (zymodemes) cause Venezuelan and Brazilian forms of Chagas disease?, Lancet, 20, 1338, 10.1016/S0140-6736(81)92518-6

Miles, 2003, American trypanosomiasis (Chagas disease) and the role of molecular epidemiology in guiding control strategies, BMJ, 28, 1444, 10.1136/bmj.326.7404.1444

O’Connor, 2007, Genetic clustering of Trypanosoma cruzi I lineage evidenced by intergenic miniexon gene sequencing, Infect. Genet. Evol., 7, 587, 10.1016/j.meegid.2007.05.003

Pedroso, 2007, Trypanosoma cruzi: exploring the nuclear genome of zymodeme 3 stocks by chromosome size polymorphism, Exp. Parasitol., 116, 71, 10.1016/j.exppara.2006.10.001

Roellig, 2008, Molecular typing of Trypanosoma cruzi isolates, United States, Emerg. Infect. Dis., 14, 1123, 10.3201/eid1407.080175

Samudio, 2007, Predominance of Trypanosoma cruzi I among Panamanian sylvatic isolates, Acta Trop., 101, 178, 10.1016/j.actatropica.2006.12.008

Schofield, 2000, Trypanosoma cruzi—the vector-parasite paradox, Mem. Inst. Oswaldo Cruz, 95, 535, 10.1590/S0074-02762000000400016

Souto, 1996, DNA markers define two major phylogenetic lineages of Trypanosoma cruzi, Mol. Biochem. Parasitol., 83, 141, 10.1016/S0166-6851(96)02755-7

Stamatakis, 2006, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, Bioinformatics, 22, 2688, 10.1093/bioinformatics/btl446

Sturm, 2003, Evidence for multiple hybrid groups in Trypanosoma cruzi, Int. J. Parasitol., 33, 269, 10.1016/S0020-7519(02)00264-3

Swofford, 2002

Teixeira, 2006, Trypanosoma cruzi lineage I in endomyocardial biopsy from a north-eastern Brazilian patient at end-stage chronic Chagasic cardiomyopathy, Trop. Med. Int. Health, 11, 294, 10.1111/j.1365-3156.2006.01575.x

Tibayrenc, 1983, A genetic comparison between Brazilian and Bolivian zymodemes of Trypanosoma cruzi, Trans. R. Soc. Trop. Med. Hyg., 77, 76, 10.1016/0035-9203(83)90021-4

Umezawa, 2009, TESA-blot for the diagnosis of Chagas disease in dogs from co-endemic regions for Trypanosoma cruzi, Trypanosoma evansi and Leishmania chagasi, Acta Trop., 111, 15, 10.1016/j.actatropica.2009.01.006

Valente, 1998, Chagas disease in the Amazon Basin: association of Panstrongylus geniculatus (Hemiptera: Reduviidae) with domestic pigs, J. Med. Entomol., 35, 99, 10.1093/jmedent/35.2.99

Westenberger, 2005, Two hybridization events define the population structure of Trypanosoma cruzi, Genetics, 171, 527, 10.1534/genetics.104.038745

Westenberger, 2006, Trypanosoma cruzi 5S rRNA arrays define five groups and indicate the geographic origins of an ancestor of the heterozygous hybrids, Int. J. Parasitol., 36, 337, 10.1016/j.ijpara.2005.11.002

Yeo, 2005, Origins of Chagas disease: Didelphis species are natural hosts of Trypanosoma cruzi I and armadillos hosts of Trypanosoma cruzi II, including hybrids, Int. J. Parasitol., 35, 225, 10.1016/j.ijpara.2004.10.024