Comparative genomics: the evolutionary history of the Bcl-2 family

Gene - Tập 333 - Trang 71-79 - 2004
Cecilia Lanave1, Monica Santamaria2, Cecilia Saccone1,2
1ITB-CNR, Milano, Bioinformatics and Genomics Section of Bari, Bari, Italy
2Department of Biochemistry and Molecular Biology, University of Bari, Via Orabona 4, 70126 Bari, Italy

Tài liệu tham khảo

Adams, 2001, Life-or-death decisions by the Bcl-2 protein family, Trends Biochem. Sci., 26, 61, 10.1016/S0968-0004(00)01740-0 Aouacheria, 2001, Nrh, a human homologue of Nr-13 associates with Bcl-Xs and is an inhibitor of apoptosis, Oncogene, 20, 5846, 10.1038/sj.onc.1204740 Bae, 2000, MCL-1S, a splicing variant of the antiapoptotic BCL-2 family member MCL-1, encodes a proapoptotic protein possessing only the BH3 domain, J. Biol. Chem., 275, 25255, 10.1074/jbc.M909826199 Borner, 2003, The Bcl-2 protein family: sensors and checkpoints for life-or-death decisions, Mol. Immunol., 39, 615, 10.1016/S0161-5890(02)00252-3 Chittenden, 1995, A conserved domain in Bak, distinct from BH1 and BH2, mediates cell death and protein binding functions, EMBO J., 14, 5589, 10.1002/j.1460-2075.1995.tb00246.x Cleary, 1986, Cloning and structural analysis of cDNAs for bcl-2 and a hybrid bcl-2/immunoglobulin transcript resulting from the t(14;18) translocation, Cell, 47, 19, 10.1016/0092-8674(86)90362-4 Colussi, 2000, Debcl, a proapoptotic Bcl-2 homologue, is a component of the Drosophila melanogaster cell death machinery, J. Cell Biol., 148, 703, 10.1083/jcb.148.4.703 Conradt, 1998, The C. elegans protein EGL-1 is required for programmed cell death and interacts with the Bcl-2-like protein CED-9, Cell, 93, 519, 10.1016/S0092-8674(00)81182-4 Conus, 2000, Bcl-2 is a monomeric protein: prevention of homodimerization by structural constraints, EMBO J., 19, 1534, 10.1093/emboj/19.7.1534 Earnshaw, 1999, Mammalian caspases: structure, activation, substrates, and functions during apoptosis, Annu. Rev. Biochem., 68, 383, 10.1146/annurev.biochem.68.1.383 Galtier, 1996, SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny, Comput. Appl. Biosci., 12, 543 Gross, 1999, BCL-2 family members and the mitochondria in apoptosis, Genes Dev., 13, 1899, 10.1101/gad.13.15.1899 Hasegawa, 1991, On the maximum likelihood method in molecular phylogenetics, J. Mol. Evol., 32, 443, 10.1007/BF02101285 Henikoff, 1997, Embedding strategies for effective use of information from multiple sequence alignments, Protein Sci., 6, 698, 10.1002/pro.5560060319 Horvitz, 1999, Genetic control of programmed cell death in the nematode Caenorhabditis elegans, Cancer Res., 59, 1701s Igaki, 2000, Drob-1, a Drosophila member of the Bcl-2/CED-9 family that promotes cell death, Proc. Natl. Acad. Sci. U. S. A., 97, 662, 10.1073/pnas.97.2.662 Jacobson, 1997, Programmed cell death in animal development, Cell, 88, 347, 10.1016/S0092-8674(00)81873-5 Jones, 1992, The rapid generation of mutation data matrices from protein sequences, Comput. Appl. Biosci., 8, 275 Ke, 2001, Bcl-B, a novel Bcl-2 family member that differentially binds and regulates Bax and Bak, J. Biol. Chem., 276, 12481, 10.1074/jbc.C000871200 Kelekar, 1998, Bcl-2-family proteins: the role of the BH3 domain in apoptosis, Trends Cell Biol., 8, 324, 10.1016/S0962-8924(98)01321-X Kitano, 2002, Systems biology: a brief overview, Science, 295, 1662, 10.1126/science.1069492 Kumar, 2001, MEGA2: molecular evolutionary genetics analysis software, Bioinformatics, 17, 1244, 10.1093/bioinformatics/17.12.1244 Lanave, 1984, A new method for calculating evolutionary substitution rates, J. Mol. Evol., 20, 86, 10.1007/BF02101990 Nicholas, 1997, GeneDoc: analysis and visualization of genetic variation, Embnet News, 4, 14 Nicholson, 1999, Caspase structure, proteolytic substrates, and function during apoptotic cell death, Cell Death Differ., 6, 1028, 10.1038/sj.cdd.4400598 Oltvai, 1993, Bcl-2 heterodimerizes in vivo with a conserved homolog, Bax, that accelerates programmed cell death, Cell, 74, 609, 10.1016/0092-8674(93)90509-O Puthalakath, 2002, Keeping killers on a tight leash: transcriptional and post-translational control of the pro-apoptotic activity of BH3-only proteins, Cell Death Differ., 9, 505, 10.1038/sj.cdd.4400998 Richardson, 2002, Death to flies: Drosophila as a model system to study programmed cell death, J. Immunol. Methods, 265, 21, 10.1016/S0022-1759(02)00068-6 Saccone, 2003 Saccone, 1990, Influence of base composition on quantitative estimates of gene evolution, Methods Enzymol., 183, 570, 10.1016/0076-6879(90)83037-A Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Sattler, 1997, Structure of Bcl-xL-Bak peptide complex: recognition between regulators of apoptosis, Science, 275, 983, 10.1126/science.275.5302.983 Schneider, 1990, Sequence logos: a new way to display consensus sequences, Nucleic Acids Res., 18, 6097, 10.1093/nar/18.20.6097 Swofford, 1998 Wiens, 2000, Molecular evolution of apoptotic pathways: cloning of key domains from sponges (Bcl-2 homology domains and death domains) and their phylogenetic relationships, J. Mol. Evol., 50, 520, 10.1007/s002390010055 Yin, 1994, BH1 and BH2 domains of Bcl-2 are required for inhibition of apoptosis and heterodimerization with Bax, Nature, 369, 321, 10.1038/369321a0 Zhang, 2001, Bcl2-L-10, a novel anti-apoptotic member of the Bcl-2 family, blocks apoptosis in the mitochondria death pathway but not in the death receptor pathway, Hum. Mol. Genet., 10, 2329, 10.1093/hmg/10.21.2329