Comparative characteristics of cement materials in natural and artificial beachrocks using a petrographic method

Al Thawadi, S (2008) High strength in-situ biocementation of soil by calcite precipitating locally isolated ureolytic bacteria. Dissertation, Murdoch University, Australia Arietta N, Goienaga N, Martinez-Azkarazo I, Murelaga X, Baceta JI, Sarmiento A, Madariaga JM (2011) Beachrock formation in temperate coastlines: examples in sand-gravel beaches adjacent to the Nerbioi-Ibaizabal estuary (Bilbao, Bay of Biscay, north of Spain). Spectrochim Acta A 80:55–65 Avcioğlu M, Yiğitbaş E, Erginal AE (2016) Beachrock formation on the coast of Gökçeada Island and its relation to the active tectonics of the region, northern Aegean Sea, Turkey. Quaternary Int 401:141–152 Ayinla HA, Abdullah WH, Makeen YM, Abubakar MB, Jaouro A, Yandoka BMS, Abidin NSZ (2017) Petrographic and geochemical characteristization of the upper cretaceous coal and mudstones of Gombe formation, Gongola sub-basin, Nortehn Benue trough Nigeria: implication for organic matter preservation, Paleodepositional environment and tectonic settings. Int Journal of Coal Geology 180:67–82. https://doi.org/10.1016/j.coal.2017.06.010 Balasubramanian A, Ponnuraj K (2010) Crystal structure of the first plant urease from jack bean: 83 years of journey its first crystal to molecular structure. J Mol Biol 400:274–283 Bäuerlein E (2003) Biomineralization of unicellular organism: an unusual membrane biochemistry for the production of inorganic nano- and microstructures. Angew Chem Int 42:614–641. https://doi.org/10.1002/anie.200390176 Boudagher-Fadel MK (2008) Evolution and geological significance of larger benthic foraminifera. Elsevier, London, p 560 Burton EA, Walter LM (1987) Relative precipitation rates of aragonite and mg calcite from seawater: temperature or carbonate ion control? Geology 15:111–114 Calvet F, Cabrera MC, Carracedo JC, Mangas J, Peréz-torrado FJ, Recio C, Travé A (2003) Beachrock from the island of La Palma (Canary Island, Spain). Mar Geol 197:75–93 Christ N, Immenhauser A, Wood RA, Darwich K, Niedermayr A (2015) Petrography and environmental control on the formation of Phanerozoic marine carbonate handgrounds. Earth Sci Rev 151:176–226 Danjo T, Kawasaki S (2014a) Characteristics of beachrocks: a review. Geotech Geol Eng 32:215–246 Danjo T, Kawasaki S (2014b) Formation mechanism of beachrocks in Okinawa and Ishikawa, Japan, with a focus on cements. Mater Trans 55:493–500 Danjo T, Kawasaki S (2016) Microbially induced sand cementation method using Pararhodobacter sp. strain S01, inspired by beachrok formation mechanism. Mater Trans 57:428–437. https://doi.org/10.2320/matertrans.M-M2015842 Desruelles S, Fouache E, Ciner A, Dalongeville R, Pavlopoulos K, Kosun E, Coquinot Y, Potdevin JL (2009) Beachrock and sea level changes since middle Holocene: comparison between the insular groups of Mykonos-Delos-Rheina (Cyclades, Greece) and the southern coast of Turkey. Glob Planet Chang 66:19–33 Dhami NK, Reddy MS, Mukherjee A (2013) Biomineralization of calcium carbonate and their engineered applications: a review. Front Microbiol 4:314 Díez B, Bauer K, Bergman B (2007) Ephilithic cyanobacterial communities of a marine tropical beachrock (Heron Island, great barrier reef): diversity and diazotrophy. Appl Environ Microbiol 73(11):3656–3668 Douglas S, Beveridge TJ (1998) Mineral formation by Bacteria in natural microbial communities. FEMS Microbiol Ecol 26:79–88. https://doi.org/10.1111/j.1574-6941.1998.tb00494.x Dunham RJ (1962) Classification of carbonate rocks according to depositional texture. In: Ham WE (ed.) Classification of carbonate rocks. Am Assoc Pet Geol Memoir, p 108–121 Dupraz C, Reid RP, Braissant O, Decho AW, Sean NR, Visscher LK (2009) Processes of carbonate precipitation in modern microbial mats. Earth Sci Rev 96:141–162 Foesel BU, Drake HL, Schramm A (2011) Defluviimonas denitricans gen. nov., sp. nov., and Pararhodobacter aggregans gen. nov., sp. nov., non-phototrophic Rhodobacteraceae from the biofilter of a marine aquaculture. Syst Appl Microb J 34:498–502. https://doi.org/10.1016/j.syapm.2011.08.006 Folk RL (1959) Practical petrographic classification of limestones. Am Assoc Pet Geol Bull 43:1–38 Fujita M, Nakashima K, Achal V, Kawasaki S (2017) Whole-cell evaluation of urease activity of Pararhodobacter sp. isolated from peripheral beachrock. Biochem Eng J 124:1–5. https://doi.org/10.1016/j.bej.2017.04.004 Hata T, Tateno N, Abe H (2011) Jpn Geotchnical J 6(2011):305–315 (in Japanese) Kardianis MT, Fouke BW, Johnson RW, Veysey J, Inskeep WI (2008) Microbial biomass: a catalys for CaCO3 precipitation in advection-dominated transport regimes. Geol Soc Am Bill 120:442–450 Karkani A, Evelpidou N, Vacchi M, Morhange C, Tsukamoto S, Frechen M, Maroukian H (2017) Tracking shoreline evolution in the Central Cyclades (Greece) using beachrocks. Mar Geol 388:25–37. https://doi.org/10.1016/j.margeo.2017.04.009 Khan MNH, Kawasaki S (2016) Formation of artificial beachrock towards inhibit of coastal erosion in Bangladesh: a review. The 15th Asian reg. conference on soil mechanics and geotechnical engineering, Japan Geotechnical Society Special Publication. https://doi.org/10.3208/jgssp.TC303-01 Khan MNH, Kawasaki S (2018) Making artificial beachrock through bio-cementation: a novel technology to inhibition of coastal Erosion. In: Hussain C (eds) Handbook of environmental materials management. Springer, Cham. https://doi.org/10.1007/978-3-319-58538-3_38-1 Putz H, Brandenburg K (2017) Match! Phase identification from powder diffraction. Crystal Impact, Bonn Kneale D, Viles HA (2000) Beach cement: incipient \( {\mathrm{CaCO}}_3^{-} \) cement beachrock development in the upper intertidal zone, north Uist, Scotland. Sediment Geol 132:165–170 Kolaiti E, Mourtzas ND (2016) Upper Holocene sea level changes in the West Saronic Gulf, Greece. Quant Int 401:71–90 Lowenstan HA, Weiner S (1988) On biomineralization. Oxford University Press, New York Mauz B, Vacchi M, Green A, Hoffmann G, Cooper A (2015) Beachrock: a tool for reconstructing relative sea level in the far-field. Mar Geol 362:1–16. https://doi.org/10.1016/j.margeo.2015.01.009 McCutcheon J, Nothdurft LD, Webb GE, Paterson D, Southam G (2016) Beachrock formation via microbial dissolution and re-precipitation of carbonate minerals. Mar Geol 382:122–135 McNeil FS (1960) The tertiary and quaternary Gastropoda of Okinawa. Prof Paper, US Geol Surv 339:148 Mobley HLT, Island MD (1995) Molecular biology of microbial ureases. Microbiol Rev 59:451–480 Murray JW (1973) Distribution and ecology of living benthic foraminifera. Heinemann, London, 274p Mwandira W, Nakashima K, Kawasaki S (2017) Bioremediation of lead-contaminated mine waste by Pararhodobacter sp. based on the microbially induced calcium carbonate precipitation technique and its effects on strength of coarse and fine grained sand. Eco Eng 109:57–64. https://doi.org/10.1016/j.ecoleng.2017.09.011 Nabhan AI, Yang W (2018) Modern sedimentary facies, depositional environments, and major controlling processes on an arid siliciclastic coast, Al Qarmah, SE Red Sea, Saudi Arabia. J Afr Earth Sci 140:9–28. https://doi.org/10.1016/j.jafrearsci.2017.12.014 Natarajan KR (1995) Kinetic study of the enzyme urease from Dolichos biflorus. J Chem Educ 72:556–557. https://doi.org/10.1021/ed072p556 Nuemeier U (1999) Experimental modelling of beachrock cementation under microbial influence. Sediment Geol 126:35–46 Ozturk MZ, Erginal AE, Kiyak NG, Ozturk T (2016) Cement fabrics and optical luminescence ages of beachrock, North Cyprus: implications for Holocene sea-level changes. Quat Int 401:132–140. https://doi.org/10.2016/j.quaint.2015.03.024 van Passen, L (2009) Biogrout, ground improvement by microbial induced carbonate precipitation. Dissertation, Delft University of Technology van Passen L, Ghose R, van der Linden T, van der Star W, van Loosdrecht M (2010a) Quantifying biomediated ground improvement by ureolysis: large-scale biogrout experiment. J Geotech Geoenviron Eng 136(12):1721–1728 van Passen L, Daza C, Staal M, Sorokin D, van der Zon W, van Loosdrecht M (2010b) Potential soil reinforcement by microbial denitrification. Ecol Eng 36(2):168–175 Potter PE (1967) Sand bodies and sedimentary environments: a review. Am Assoc Pet Geol Bull 51:337–365 Pozo M, Carretero MI, Galán E (2016) Approach to the trace element geochemistry of non-marine Sepiolite deposits: influence of the sedimentary environment (Madrid Basin, Spain). Appl Clay Sci 131:27–43. https://doi.org/10.1016/j.clay.2015.10.024 Romanenko LA, Schumann P, Zhukova NV, Rohde M, Mikhailov VV, Stakebrant E (2003) Oceanisphaera litoralis gen. nov., sp. nov., a novel halophilic bacterium from marine bottom sediments. Int J Syst Evol Micr 53:1885–1888. https://doi.org/10.1099/ijs.0.02774-0 Saitis G (2016) The development of beachrocks and their significance for the coastal and human environment: study of the natural formation and “in vitro” with the use of bacteria, area of study: Corinth, Salamis (Greece) and Okinawa (Japan). University of Athens, Greece Scholle PA, Ulmer-Scholle D (2003) Cement and cementation. In: Middleton GV (ed) Encyclopedia of sediments and sedimentary rocks. Kluwer, Dordrecht, pp 110–119 Stoddart DR, Cann JR (1965a) Nature and origin of beachrock. J Sediment Petrol 35:243–247 Stoddart DR, Cann JR (1965b) Nature and origin of Beachrock. J Sediment Petrol 35(1):243–247 Tirkolaei HK, Kavazanjian E, van Passen L, DeJong J (2018) Bio-grout materials: a review. ASCE. https://doi.org/10.1061/9780784480793.001 Tokashiki N, Aydan O (2010) The off-Okinawa Island earthquake of February 27th, 2010. Japan Society of Civil Engineering. http://www.jsce.or.jp/library/eq_repo/Vol3/14/20100227okinawa_report.pdf Vousdoukas MI, Velegrakis AF, Plomaritis TA (2007) Beachrock occurences, characteristics, formation mechanism and impacts. Earth Sci Rev 85:23–46 Weatherburn MW (1967) Phenol-hypochlorite reaction for determination of Ammonia. Anal Chem 39:971–974. https://doi.org/10.1021/ac60252a045