Comparative analysis of the standard PCR-Based Replicon Typing (PBRT) with the commercial PBRT-KIT
Tóm tắt
Từ khóa
Tài liệu tham khảo
Bonnin, 2013, Comparative genomics of IncL/M-type plasmids: evolution by acquisition of resistance genes and insertion sequences, Antimicrob. Agents Chemother., 57, 674, 10.1128/AAC.01086-12
Bortolaia, 2010, High diversity of extended-spectrum beta-lactamases in Escherichia coli isolates from Italian broiler flocks, Antimicrob. Agents Chemother., 54, 1623, 10.1128/AAC.01361-09
Carattoli, 2009, Resistance plasmid families in Enterobacteriaceae, Antimicrob. Agents Chemother., 53, 2227, 10.1128/AAC.01707-08
Carattoli, 2011, Plasmids in Gram negatives: molecular typing of resistance plasmids, Int. J. Med. Microbiol., 301, 654, 10.1016/j.ijmm.2011.09.003
Carattoli, 2013, Plasmids and the spread of resistance, Int. J. Med. Microbiol., 303, 298, 10.1016/j.ijmm.2013.02.001
Carattoli, 2005, Identification of plasmids by PCR-based replicon typing, J. Microbiol. Methods, 63, 219, 10.1016/j.mimet.2005.03.018
Carattoli, 2014, In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing, Antimicrob. Agents Chemother., 58, 3895, 10.1128/AAC.02412-14
Carattoli, 2015, Differentiation of IncL and IncM plasmids associated with the spread of clinically relevant antimicrobial resistance, PLoS One, 10, 1, 10.1371/journal.pone.0123063
Cloeckaert, 2010, IncI1 plasmid carrying extended-spectrum-beta-lactamase gene blaCTX-M-1 in Salmonella enterica isolates from poultry and humans in France, 2003 to 2008, Antimicrob. Agents Chemother., 54, 4484, 10.1128/AAC.00460-10
Couturier, 1988, Identification and classification of bacterial plasmids, Microbiol. Rev., 52, 375, 10.1128/MMBR.52.3.375-395.1988
Di Pilato, 2014, Characterization of pFOX-7a, a conjugative IncL/M plasmid encoding the FOX-7 AmpC-type β-lactamase, involved in a large outbreak in a neonatal intensive care unit, J. Antimicrob. Chemother., 69, 2620, 10.1093/jac/dku216
Folster, 2010, Identification and characterization of CTX-M-producing Shigella isolates in the United States, Antimicrob. Agents Chemother., 54, 2269, 10.1128/AAC.00039-10
Galimand, 2005, Worldwide disseminated armA aminoglycoside resistance methylase gene is borne by composite transposon Tn1548, Antimicrob. Agents Chemother., 49, 2949, 10.1128/AAC.49.7.2949-2953.2005
García-Fernández, 2009, Characterization of plasmids harbouring qnrS1, qnrB2 and qnrB19 genes in Salmonella, J. Antimicrob. Chemother., 63, 274, 10.1093/jac/dkn470
García-Fernández, 2012, Klebsiella pneumoniae ST258 producing KPC-3 identified in Italy carries novel plasmids and OmpK36/OmpK35 porin variants, Antimicrob. Agents Chemother., 56, 2143, 10.1128/AAC.05308-11
Gołebiewski, 2007, Complete nucleotide sequence of the pCTX-M3 plasmid and its involvement in spread of the extended-spectrum beta-lactamase gene blaCTX-M-3, Antimicrob. Agents Chemother., 51, 3789, 10.1128/AAC.00457-07
Hansen, 2016, Host-specific patterns of genetic diversity among IncI1-Iγ and IncK plasmids encoding CMY-2 β-lactamase in Escherichia coli isolates from humans, poultry meat, poultry, and dogs in Denmark, Appl. Environ. Microbiol., 82, 4705, 10.1128/AEM.00495-16
Hawkey, 2009, The changing epidemiology of resistance, J. Antimicrob. Chemother., 64, i3, 10.1093/jac/dkp256
Ho, 2011, Complete sequencing of pNDM-HK encoding NDM-1 carbapenemase from a multidrug-resistant Escherichia coli strain isolated in Hong Kong, PLoS One, 6, 10.1371/journal.pone.0017989
Johnson, 2011, Comparative genomics and phylogeny of the IncI1 plasmids: a common plasmid type among porcine enterotoxigenic Escherichia coli, Plasmid, 66, 144, 10.1016/j.plasmid.2011.07.003
Johnson, 2012, Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae, Plasmid, 68, 43, 10.1016/j.plasmid.2012.03.001
Liakopoulos, 2016, The colistin resistance mcr-1 gene is going wild, J. Antimicrob. Chemother., 71, 2335, 10.1093/jac/dkw262
Literak, 2010, Antibiotic-resistant Escherichia coli bacteria, including strains with genes encoding the extended-spectrum beta-lactamase and QnrS, in waterbirds on the Baltic Sea Coast of Poland, Appl. Environ. Microbiol., 76, 8126, 10.1128/AEM.01446-10
Lv, 2013, Genetic characterization of IncI2 plasmids carrying blaCTX-M-55 spreading in both pets and food animals in China, Antimicrob. Agents Chemother., 57, 2824, 10.1128/AAC.02155-12
Moissenet, 2010, Meningitis caused by Escherichia coli producing TEM-52 extended-spectrum beta-lactamase within an extensive outbreak in a neonatal ward: epidemiological investigation and characterization of the strain, J. Clin. Microbiol., 48, 2459, 10.1128/JCM.00529-10
Norman, 2008, Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux, Plasmid, 60, 59, 10.1016/j.plasmid.2008.03.003
Partridge, 2012, pEl1573 carrying blaIMP-4, from Sydney, Australia, is closely related to other IncL/M plasmids, Antimicrob. Agents Chemother., 56, 6029, 10.1128/AAC.01189-12
Poirel, 2012, Genetic features of the widespread plasmid coding for the carbapenemase OXA-48, Antimicrob. Agents Chemother., 56, 559, 10.1128/AAC.05289-11
Sherburne, 2000, The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer, Nucleic Acids Res., 28, 2177, 10.1093/nar/28.10.2177
Smet, 2010, Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: insertional events of transposons and insertion sequences, PLoS One, 5, 10.1371/journal.pone.0011202
Villa, 2000, Multiple-antibiotic resistance mediated by structurally related IncL/M plasmids carrying an extended-spectrum β-lactamase gene and a class 1 integron, Antimicrob. Agents Chemother, 44, 2911, 10.1128/AAC.44.10.2911-2914.2000
Villa, 2010, Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants, J. Antimicrob. Chemother., 65, 2518, 10.1093/jac/dkq347
Villa, 2012, Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes, J. Antimicrob. Chemother., 67, 1645, 10.1093/jac/dks114
Villa, 2013, Reversion to susceptibility of a carbapenem-resistant clinical isolate of Klebsiella pneumoniae producing KPC-3, J. Antimicrob. Chemother., 68, 2482, 10.1093/jac/dkt235