Comparative analysis of the standard PCR-Based Replicon Typing (PBRT) with the commercial PBRT-KIT

Plasmid - Tập 90 - Trang 10-14 - 2017
Elisa Carloni1, Francesca Andreoni1, Enrica Omiccioli2, Laura Villa3, Mauro Magnani1, Alessandra Carattoli3
1Department of Biomolecular Science, University of Urbino "Carlo Bo", via Arco d'Augusto, 2, 61032 Fano, Italy
2Diatheva srl, via Sant'Anna, 131, 61030 Cartoceto, Italy
3Department of Infectious, Parasitic and Immune-Mediated Diseases, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy

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Bonnin, 2013, Comparative genomics of IncL/M-type plasmids: evolution by acquisition of resistance genes and insertion sequences, Antimicrob. Agents Chemother., 57, 674, 10.1128/AAC.01086-12

Bortolaia, 2010, High diversity of extended-spectrum beta-lactamases in Escherichia coli isolates from Italian broiler flocks, Antimicrob. Agents Chemother., 54, 1623, 10.1128/AAC.01361-09

Carattoli, 2009, Resistance plasmid families in Enterobacteriaceae, Antimicrob. Agents Chemother., 53, 2227, 10.1128/AAC.01707-08

Carattoli, 2011, Plasmids in Gram negatives: molecular typing of resistance plasmids, Int. J. Med. Microbiol., 301, 654, 10.1016/j.ijmm.2011.09.003

Carattoli, 2013, Plasmids and the spread of resistance, Int. J. Med. Microbiol., 303, 298, 10.1016/j.ijmm.2013.02.001

Carattoli, 2005, Identification of plasmids by PCR-based replicon typing, J. Microbiol. Methods, 63, 219, 10.1016/j.mimet.2005.03.018

Carattoli, 2014, In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing, Antimicrob. Agents Chemother., 58, 3895, 10.1128/AAC.02412-14

Carattoli, 2015, Differentiation of IncL and IncM plasmids associated with the spread of clinically relevant antimicrobial resistance, PLoS One, 10, 1, 10.1371/journal.pone.0123063

Cloeckaert, 2010, IncI1 plasmid carrying extended-spectrum-beta-lactamase gene blaCTX-M-1 in Salmonella enterica isolates from poultry and humans in France, 2003 to 2008, Antimicrob. Agents Chemother., 54, 4484, 10.1128/AAC.00460-10

Couturier, 1988, Identification and classification of bacterial plasmids, Microbiol. Rev., 52, 375, 10.1128/MMBR.52.3.375-395.1988

Datta, 1971, Compatibility groups among fi - R factors, Nature, 234, 222, 10.1038/234222a0

Di Pilato, 2014, Characterization of pFOX-7a, a conjugative IncL/M plasmid encoding the FOX-7 AmpC-type β-lactamase, involved in a large outbreak in a neonatal intensive care unit, J. Antimicrob. Chemother., 69, 2620, 10.1093/jac/dku216

Folster, 2010, Identification and characterization of CTX-M-producing Shigella isolates in the United States, Antimicrob. Agents Chemother., 54, 2269, 10.1128/AAC.00039-10

Galimand, 2005, Worldwide disseminated armA aminoglycoside resistance methylase gene is borne by composite transposon Tn1548, Antimicrob. Agents Chemother., 49, 2949, 10.1128/AAC.49.7.2949-2953.2005

García-Fernández, 2009, Characterization of plasmids harbouring qnrS1, qnrB2 and qnrB19 genes in Salmonella, J. Antimicrob. Chemother., 63, 274, 10.1093/jac/dkn470

García-Fernández, 2012, Klebsiella pneumoniae ST258 producing KPC-3 identified in Italy carries novel plasmids and OmpK36/OmpK35 porin variants, Antimicrob. Agents Chemother., 56, 2143, 10.1128/AAC.05308-11

Gołebiewski, 2007, Complete nucleotide sequence of the pCTX-M3 plasmid and its involvement in spread of the extended-spectrum beta-lactamase gene blaCTX-M-3, Antimicrob. Agents Chemother., 51, 3789, 10.1128/AAC.00457-07

Hansen, 2016, Host-specific patterns of genetic diversity among IncI1-Iγ and IncK plasmids encoding CMY-2 β-lactamase in Escherichia coli isolates from humans, poultry meat, poultry, and dogs in Denmark, Appl. Environ. Microbiol., 82, 4705, 10.1128/AEM.00495-16

Hawkey, 2009, The changing epidemiology of resistance, J. Antimicrob. Chemother., 64, i3, 10.1093/jac/dkp256

Ho, 2011, Complete sequencing of pNDM-HK encoding NDM-1 carbapenemase from a multidrug-resistant Escherichia coli strain isolated in Hong Kong, PLoS One, 6, 10.1371/journal.pone.0017989

Johnson, 2011, Comparative genomics and phylogeny of the IncI1 plasmids: a common plasmid type among porcine enterotoxigenic Escherichia coli, Plasmid, 66, 144, 10.1016/j.plasmid.2011.07.003

Johnson, 2012, Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae, Plasmid, 68, 43, 10.1016/j.plasmid.2012.03.001

Liakopoulos, 2016, The colistin resistance mcr-1 gene is going wild, J. Antimicrob. Chemother., 71, 2335, 10.1093/jac/dkw262

Literak, 2010, Antibiotic-resistant Escherichia coli bacteria, including strains with genes encoding the extended-spectrum beta-lactamase and QnrS, in waterbirds on the Baltic Sea Coast of Poland, Appl. Environ. Microbiol., 76, 8126, 10.1128/AEM.01446-10

Lv, 2013, Genetic characterization of IncI2 plasmids carrying blaCTX-M-55 spreading in both pets and food animals in China, Antimicrob. Agents Chemother., 57, 2824, 10.1128/AAC.02155-12

Moissenet, 2010, Meningitis caused by Escherichia coli producing TEM-52 extended-spectrum beta-lactamase within an extensive outbreak in a neonatal ward: epidemiological investigation and characterization of the strain, J. Clin. Microbiol., 48, 2459, 10.1128/JCM.00529-10

Norman, 2008, Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux, Plasmid, 60, 59, 10.1016/j.plasmid.2008.03.003

Novick, 1987, Plasmid incompatibility, Microbiol. Rev., 51, 381, 10.1128/MMBR.51.4.381-395.1987

Partridge, 2012, pEl1573 carrying blaIMP-4, from Sydney, Australia, is closely related to other IncL/M plasmids, Antimicrob. Agents Chemother., 56, 6029, 10.1128/AAC.01189-12

Poirel, 2012, Genetic features of the widespread plasmid coding for the carbapenemase OXA-48, Antimicrob. Agents Chemother., 56, 559, 10.1128/AAC.05289-11

Sherburne, 2000, The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer, Nucleic Acids Res., 28, 2177, 10.1093/nar/28.10.2177

Smet, 2010, Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: insertional events of transposons and insertion sequences, PLoS One, 5, 10.1371/journal.pone.0011202

Villa, 2000, Multiple-antibiotic resistance mediated by structurally related IncL/M plasmids carrying an extended-spectrum β-lactamase gene and a class 1 integron, Antimicrob. Agents Chemother, 44, 2911, 10.1128/AAC.44.10.2911-2914.2000

Villa, 2010, Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants, J. Antimicrob. Chemother., 65, 2518, 10.1093/jac/dkq347

Villa, 2012, Complete sequencing of an IncH plasmid carrying the blaNDM-1, blaCTX-M-15 and qnrB1 genes, J. Antimicrob. Chemother., 67, 1645, 10.1093/jac/dks114

Villa, 2013, Reversion to susceptibility of a carbapenem-resistant clinical isolate of Klebsiella pneumoniae producing KPC-3, J. Antimicrob. Chemother., 68, 2482, 10.1093/jac/dkt235

Zhu, 2009, Complete nucleotide sequence of pCTX-M360, an intermediate plasmid between pEL60 and pCTX-M3, from a multidrug-resistant Klebsiella pneumoniae strain isolated in China, Antimicrob. Agents Chemother., 53, 5291, 10.1128/AAC.00032-09